Wall clock time and date at job start Mon Mar 30 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99903 * 2 1 4 4 H 1.48502 * 109.47269 * 270.00476 * 3 2 1 5 5 H 1.48493 * 109.47179 * 30.00865 * 3 2 1 6 6 H 1.48504 * 109.46854 * 150.00878 * 3 2 1 7 7 C 1.37882 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99411 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46970 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46970 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46884 * 179.97438 * 12 11 10 14 14 C 1.46557 * 111.00264 * 48.96719 * 13 12 11 15 15 C 1.53491 * 109.11788 * 178.95035 * 14 13 12 16 16 N 1.47275 * 107.23362 * 298.28468 * 15 14 13 17 17 C 1.40470 * 117.63684 * 41.16581 * 16 15 14 18 18 C 1.38647 * 119.47336 * 168.41866 * 17 16 15 19 19 C 1.38265 * 120.00767 * 179.66044 * 18 17 16 20 20 C 1.38253 * 119.97568 * 0.02562 * 19 18 17 21 21 C 1.38123 * 120.30178 * 0.13181 * 20 19 18 22 22 C 1.39084 * 120.21416 * 359.96882 * 21 20 19 23 23 H 0.96999 * 120.00047 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47118 * 60.00147 * 9 7 2 25 25 H 1.08997 * 109.46929 * 299.99912 * 9 7 2 26 26 H 1.09000 * 109.47197 * 60.00010 * 10 9 7 27 27 H 1.09003 * 109.47037 * 300.00127 * 10 9 7 28 28 H 1.09000 * 109.47173 * 59.99970 * 11 10 9 29 29 H 1.09003 * 109.47323 * 299.99926 * 11 10 9 30 30 H 1.09000 * 109.47197 * 59.99985 * 12 11 10 31 31 H 1.08997 * 109.47038 * 299.99634 * 12 11 10 32 32 H 1.08998 * 109.53182 * 59.05554 * 14 13 12 33 33 H 1.09007 * 109.52687 * 298.84223 * 14 13 12 34 34 H 1.08997 * 109.90642 * 178.84599 * 15 14 13 35 35 H 1.09004 * 109.90440 * 57.70946 * 15 14 13 36 36 H 0.96997 * 121.18224 * 221.19308 * 16 15 14 37 37 H 1.08005 * 119.99371 * 359.68138 * 18 17 16 38 38 H 1.08003 * 120.00898 * 180.27380 * 19 18 17 39 39 H 1.08004 * 119.84755 * 180.10767 * 20 19 18 40 40 H 1.07997 * 119.88859 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6525 0.7002 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0018 13 7 1.7398 -7.4222 -0.0018 14 6 0.6989 -7.4277 -1.0335 15 6 -0.0221 -8.7826 -1.0130 16 7 0.9802 -9.8150 -1.3270 17 6 2.2516 -9.6877 -0.7435 18 6 3.1426 -10.7478 -0.8115 19 6 4.3995 -10.6320 -0.2471 20 6 4.7671 -9.4591 0.3856 21 6 3.8830 -8.4005 0.4597 22 6 2.6154 -8.5066 -0.1027 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8538 -5.0446 -0.8914 29 1 0.8532 -5.0451 0.8886 30 1 3.1011 -6.0928 0.8882 31 1 3.1009 -6.0919 -0.8918 32 1 1.1543 -7.2721 -2.0115 33 1 -0.0172 -6.6307 -0.8328 34 1 -0.8134 -8.7933 -1.7625 35 1 -0.4438 -8.9636 -0.0242 36 1 0.7700 -10.5563 -1.9162 37 1 2.8550 -11.6640 -1.3058 38 1 5.0952 -11.4562 -0.3039 39 1 5.7501 -9.3702 0.8243 40 1 4.1770 -7.4874 0.9559 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395517638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:25 Heat of formation + Delta-G solvation = 4.598689 kcal Electronic energy + Delta-G solvation = -18871.256813 eV Core-core repulsion = 16070.238740 eV Total energy + Delta-G solvation = -2801.018073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48918 -38.17540 -36.82285 -35.83448 -34.09064 -31.47358 -31.09821 -30.17903 -27.72659 -25.97468 -24.79299 -23.81176 -22.27856 -21.64394 -20.66997 -18.59434 -18.38301 -17.61544 -17.21128 -16.57835 -16.38841 -16.01546 -15.39100 -15.01674 -14.86157 -14.60958 -14.46512 -14.29789 -13.79848 -13.52353 -13.45640 -13.02144 -12.84096 -12.66084 -12.35822 -12.32421 -12.26382 -12.08243 -11.65755 -11.39053 -11.30306 -11.07880 -10.94834 -10.66501 -10.55242 -9.04915 -8.20177 -8.00281 -6.31255 0.53498 0.71610 1.39761 1.41160 1.52428 2.40620 2.48029 2.73332 3.09554 3.12836 3.76094 3.85747 4.03039 4.08225 4.23047 4.27384 4.37149 4.42847 4.49671 4.57464 4.60078 4.61597 4.72639 4.85890 4.90246 4.92444 5.06769 5.16517 5.23037 5.27185 5.29340 5.43725 5.53434 5.76418 5.76983 5.86172 5.89860 6.03264 6.15171 6.25845 6.49817 6.86014 6.96896 7.38008 8.91699 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035816 B = 0.003492 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.578420 B = 8017.317606 C = 8676.656955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.096 4.096 11 C -0.108 4.108 12 C 0.072 3.928 13 N -0.498 5.498 14 C 0.031 3.969 15 C 0.127 3.873 16 N -0.755 5.755 17 C 0.158 3.842 18 C -0.172 4.172 19 C -0.111 4.111 20 C -0.153 4.153 21 C -0.139 4.139 22 C 0.032 3.968 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.061 0.939 36 H 0.413 0.587 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -22.959 -2.796 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.135 4.135 11 C -0.146 4.146 12 C -0.054 4.054 13 N -0.213 5.213 14 C -0.097 4.097 15 C 0.002 3.998 16 N -0.391 5.391 17 C 0.054 3.946 18 C -0.195 4.195 19 C -0.130 4.130 20 C -0.173 4.173 21 C -0.160 4.160 22 C -0.069 4.069 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.251 0.749 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.154 0.846 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.221 -22.688 -2.323 23.194 hybrid contribution 0.271 1.031 -0.727 1.290 sum 4.492 -21.657 -3.050 22.327 Atomic orbital electron populations 1.70096 1.07793 1.27759 1.51740 1.25997 0.95797 1.03396 0.94743 0.85450 0.78693 0.78418 0.78516 1.19737 1.20690 1.18732 1.21743 0.93571 0.92547 1.50465 0.92254 1.18999 0.94430 0.93069 0.94748 1.21391 0.98051 0.93437 1.00573 1.21626 0.97961 0.93007 1.01966 1.22176 0.95488 0.86317 1.01407 1.58422 1.14085 1.02040 1.46716 1.22562 0.94813 1.00102 0.92195 1.21761 0.90866 0.85183 1.02031 1.44756 1.09322 1.30419 1.54579 1.17786 0.87738 0.93312 0.95747 1.20789 0.94829 0.97790 1.06108 1.21141 0.96011 0.98107 0.97768 1.21035 1.00146 0.93608 1.02503 1.21100 0.92341 1.00627 1.01964 1.18705 0.93047 0.91657 1.03529 0.92770 0.99058 0.99064 0.92890 0.93193 0.92053 0.92069 0.89763 0.94320 0.94298 0.88377 0.86739 0.92103 0.74942 0.84132 0.83757 0.84624 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -3.99 5.15 30.59 0.16 -3.83 16 11 C -0.11 -3.67 4.59 30.59 0.14 -3.53 16 12 C 0.07 2.12 4.29 86.30 0.37 2.49 16 13 N -0.50 -14.02 4.68 -694.64 -3.25 -17.27 16 14 C 0.03 0.75 4.87 86.53 0.42 1.17 16 15 C 0.13 2.38 7.35 86.40 0.63 3.02 16 16 N -0.76 -14.38 5.93 -336.18 -1.99 -16.37 16 17 C 0.16 3.74 6.48 38.09 0.25 3.99 16 18 C -0.17 -3.40 9.90 22.37 0.22 -3.18 16 19 C -0.11 -2.09 10.05 22.28 0.22 -1.86 16 20 C -0.15 -3.24 10.03 22.25 0.22 -3.02 16 21 C -0.14 -3.55 9.06 22.45 0.20 -3.35 16 22 C 0.03 0.87 5.88 38.32 0.23 1.10 16 23 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 2.05 6.34 -2.39 -0.02 2.04 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.08 2.41 6.47 -2.39 -0.02 2.40 16 31 H 0.04 1.16 8.12 -2.39 -0.02 1.14 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 2.41 6.27 -2.38 -0.01 2.39 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.41 5.61 8.89 -92.71 -0.82 4.79 16 37 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 38 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 40 H 0.12 3.08 6.05 -2.91 -0.02 3.07 16 Total: -1.00 -67.79 319.44 1.17 -66.61 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.20 Total: 14.03 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 3.91 Total: -36.55 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -4.96 Total: -90.82 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -67.79 1.17 -66.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395517638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.213 kcal (2) G-P(sol) polarization free energy of solvation -67.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds