Wall clock time and date at job start Mon Mar 30 2020 07:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38224 * 119.61621 * 2 1 4 4 C 1.38638 * 119.15795 * 180.22904 * 3 2 1 5 5 C 1.50696 * 120.78952 * 179.80002 * 4 3 2 6 6 C 1.38669 * 118.41773 * 359.52344 * 4 3 2 7 7 C 1.50696 * 120.41556 * 180.23161 * 6 4 3 8 8 N 1.46904 * 109.47239 * 80.00133 * 7 6 4 9 9 C 1.46900 * 110.99969 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47144 * 185.34850 * 9 8 7 11 11 C 1.50699 * 115.54796 * 65.04986 * 10 9 8 12 12 H 1.07995 * 120.00171 * 265.44297 * 11 10 9 13 13 C 1.37881 * 119.99849 * 85.44510 * 11 10 9 14 14 N 1.31514 * 120.00431 * 353.59038 * 13 11 10 15 15 Si 1.86799 * 120.00089 * 173.59441 * 13 11 10 16 16 H 1.48503 * 109.47025 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47155 * 119.99629 * 15 13 11 18 18 H 1.48503 * 109.47385 * 240.00067 * 15 13 11 19 19 C 1.52994 * 117.50099 * 279.37714 * 10 9 8 20 20 C 1.53003 * 117.49981 * 210.71935 * 10 9 8 21 21 C 1.38180 * 119.16612 * 0.24972 * 6 4 3 22 22 N 1.31854 * 119.61411 * 179.74337 * 2 1 3 23 23 H 1.09001 * 109.47033 * 270.25680 * 1 2 3 24 24 H 1.09003 * 109.46676 * 30.25055 * 1 2 3 25 25 H 1.08993 * 109.47073 * 150.25559 * 1 2 3 26 26 H 1.07997 * 120.42154 * 0.02562 * 3 2 1 27 27 H 1.08992 * 109.47148 * 269.71957 * 5 4 3 28 28 H 1.09000 * 109.46899 * 149.71513 * 5 4 3 29 29 H 1.09000 * 109.47329 * 29.72054 * 5 4 3 30 30 H 1.09008 * 109.46964 * 199.99956 * 7 6 4 31 31 H 1.08995 * 109.47270 * 319.99900 * 7 6 4 32 32 H 1.00899 * 110.99850 * 303.94811 * 8 7 6 33 33 H 1.09004 * 109.47149 * 305.35098 * 9 8 7 34 34 H 1.09011 * 109.47273 * 65.35004 * 9 8 7 35 35 H 0.97001 * 120.00448 * 179.97438 * 14 13 11 36 36 H 1.09002 * 117.50013 * 0.02562 * 19 10 9 37 37 H 1.09011 * 117.49656 * 145.01799 * 19 10 9 38 38 H 1.09003 * 117.49881 * 214.98549 * 20 10 9 39 39 H 1.09000 * 117.49695 * 359.97438 * 20 10 9 40 40 H 1.07998 * 119.62047 * 179.97438 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5765 1.1906 -0.0048 5 6 4.3582 2.4789 -0.0095 6 6 4.2267 -0.0342 0.0006 7 6 5.7322 -0.0988 0.0010 8 7 6.2318 0.1266 1.3640 9 6 7.6992 0.0700 1.4029 10 6 8.1753 0.1754 2.8531 11 6 7.7829 -0.9696 3.7508 12 1 6.8905 -0.9007 4.3552 13 6 8.5632 -2.1053 3.8005 14 7 9.5774 -2.2431 2.9747 15 14 8.1797 -3.4484 5.0408 16 1 6.9968 -3.0542 5.8475 17 1 7.8890 -4.7160 4.3239 18 1 9.3479 -3.6431 5.9368 19 6 8.2396 1.5714 3.4759 20 6 9.5311 0.8382 3.1052 21 6 3.4767 -1.1948 0.0054 22 7 2.1586 -1.1463 0.0051 23 1 -0.3633 0.0046 1.0277 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3633 -0.8922 -0.5098 26 1 1.6508 2.1373 0.0004 27 1 4.5474 2.7854 -1.0382 28 1 5.3072 2.3300 0.5056 29 1 3.7855 3.2533 0.5008 30 1 6.0539 -1.0808 -0.3462 31 1 6.1290 0.6692 -0.6630 32 1 5.8935 1.0027 1.7328 33 1 8.0378 -0.8745 0.9770 34 1 8.1102 0.8976 0.8245 35 1 10.1266 -3.0419 3.0100 36 1 7.9423 2.4148 2.8526 37 1 7.9983 1.6615 4.5351 38 1 10.1391 0.4462 3.9205 39 1 10.0840 1.1988 2.2378 40 1 3.9754 -2.1526 0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397046563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:51 Heat of formation + Delta-G solvation = 48.221750 kcal Electronic energy + Delta-G solvation = -19145.506666 eV Core-core repulsion = 16346.380231 eV Total energy + Delta-G solvation = -2799.126436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31927 -37.13703 -35.38175 -33.28472 -32.39212 -31.78960 -28.80201 -27.59194 -25.84465 -24.93706 -23.13718 -22.40068 -21.03970 -20.36426 -18.98187 -16.87339 -16.27050 -15.58852 -15.12918 -14.80039 -14.56424 -14.32668 -13.82363 -13.61429 -13.33471 -13.19471 -12.81221 -12.63361 -12.54592 -12.21291 -12.13552 -11.91840 -11.51305 -11.22241 -10.97253 -10.91163 -10.64273 -10.41813 -10.16186 -9.51747 -9.32735 -9.25997 -8.79911 -8.64848 -8.35288 -8.04044 -7.56859 -5.93445 -3.94497 1.23924 1.37720 3.35575 3.43838 3.49091 3.84048 4.40857 4.50595 4.65074 4.80099 4.93546 5.06403 5.16780 5.34781 5.36381 5.40261 5.47196 5.48111 5.54431 5.57270 5.69263 5.77470 5.92655 6.03044 6.10321 6.17348 6.23403 6.32750 6.47958 6.49516 6.63158 6.73725 6.85776 6.89391 7.12649 7.47996 7.57143 7.90585 8.00285 8.11145 8.15672 8.57751 9.04977 9.68811 11.16497 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.005210 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.472724 B = 5372.663377 C = 6185.902552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.118 3.882 3 C -0.176 4.176 4 C -0.036 4.036 5 C -0.119 4.119 6 C -0.126 4.126 7 C 0.101 3.899 8 N -0.662 5.662 9 C 0.107 3.893 10 C 0.052 3.948 11 C -0.468 4.468 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.287 1.287 19 C -0.216 4.216 20 C -0.157 4.157 21 C 0.125 3.875 22 N -0.491 5.491 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.129 0.871 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.329 0.671 33 H 0.078 0.922 34 H -0.005 1.005 35 H 0.256 0.744 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.870 7.934 -8.061 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.020 4.020 3 C -0.196 4.196 4 C -0.045 4.045 5 C -0.175 4.175 6 C -0.128 4.128 7 C -0.029 4.029 8 N -0.293 5.293 9 C -0.022 4.022 10 C 0.051 3.949 11 C -0.506 4.506 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.213 1.213 19 C -0.254 4.254 20 C -0.196 4.196 21 C -0.032 4.032 22 N -0.201 5.201 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.147 0.853 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.013 0.987 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.264 6.363 -7.916 15.924 hybrid contribution 0.726 0.836 0.259 1.137 sum -11.538 7.199 -7.657 15.608 Atomic orbital electron populations 1.20664 0.89258 1.03002 1.02868 1.21207 0.96773 0.88496 0.95495 1.21731 0.94018 0.99046 1.04815 1.20184 0.93725 0.95328 0.95244 1.20861 1.00219 0.93846 1.02596 1.20794 0.97342 0.93375 1.01273 1.20781 0.88724 1.01606 0.91757 1.60371 1.11244 1.39873 1.17805 1.21590 0.84375 0.98964 0.97228 1.18823 0.94882 0.89726 0.91442 1.20336 1.08799 0.98688 1.22749 0.92267 1.24926 0.95168 0.97793 0.95530 1.70013 1.18449 1.27670 1.36280 0.86616 0.78093 0.82104 0.81650 1.19815 1.21186 1.21282 1.22992 1.05166 0.97048 1.00157 1.22516 0.91180 1.04476 1.01384 1.22666 0.88752 0.98274 0.93549 1.67527 1.10026 1.29210 1.13319 0.90627 0.91104 0.90706 0.85320 0.90749 0.90895 0.91019 0.90099 0.95200 0.85259 0.90338 0.98715 0.93396 0.92295 0.90525 0.90039 0.92159 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.17 36.01 0.37 -0.60 16 2 C 0.12 1.57 6.78 -82.58 -0.56 1.01 16 3 C -0.18 -2.17 9.45 -39.44 -0.37 -2.54 16 4 C -0.04 -0.49 5.92 -104.32 -0.62 -1.10 16 5 C -0.12 -1.30 9.35 36.00 0.34 -0.96 16 6 C -0.13 -1.89 5.41 -104.49 -0.57 -2.46 16 7 C 0.10 1.61 5.07 -4.98 -0.03 1.58 16 8 N -0.66 -12.70 6.35 -115.05 -0.73 -13.43 16 9 C 0.11 2.32 5.51 -3.83 -0.02 2.30 16 10 C 0.05 1.26 1.55 -155.66 -0.24 1.02 16 11 C -0.47 -12.75 8.74 -34.44 -0.30 -13.05 16 12 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 13 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 14 N -0.89 -25.08 12.92 55.43 0.72 -24.37 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 C -0.22 -4.65 9.96 -26.70 -0.27 -4.91 16 20 C -0.16 -3.67 9.41 -26.70 -0.25 -3.92 16 21 C 0.12 1.95 10.83 -17.55 -0.19 1.76 16 22 N -0.49 -7.68 10.27 -9.47 -0.10 -7.78 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.88 5.45 -51.93 -0.28 0.60 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.08 1.31 8.02 -51.92 -0.42 0.90 16 31 H 0.03 0.44 7.38 -51.93 -0.38 0.06 16 32 H 0.33 5.99 7.12 -39.29 -0.28 5.71 16 33 H 0.08 1.91 8.13 -51.93 -0.42 1.49 16 34 H -0.01 -0.11 8.09 -51.92 -0.42 -0.53 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.16 2.31 8.04 -52.49 -0.42 1.88 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -29.70 333.53 -9.31 -39.00 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.39 Total: 5.07 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -2.80 Total: -20.12 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.11 Total: -45.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.70 -9.31 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397046563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.225 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds