Wall clock time and date at job start Mon Mar 30 2020 07:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38224 * 119.61621 * 2 1 4 4 C 1.38638 * 119.15795 * 180.22904 * 3 2 1 5 5 C 1.50696 * 120.78952 * 179.80002 * 4 3 2 6 6 C 1.38669 * 118.41773 * 359.52344 * 4 3 2 7 7 C 1.50696 * 120.41556 * 180.23161 * 6 4 3 8 8 N 1.46904 * 109.47239 * 80.00133 * 7 6 4 9 9 C 1.46900 * 110.99969 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47144 * 185.34850 * 9 8 7 11 11 C 1.50699 * 115.54796 * 65.04986 * 10 9 8 12 12 H 1.07995 * 120.00171 * 265.44297 * 11 10 9 13 13 C 1.37881 * 119.99849 * 85.44510 * 11 10 9 14 14 N 1.31514 * 120.00431 * 353.59038 * 13 11 10 15 15 Si 1.86799 * 120.00089 * 173.59441 * 13 11 10 16 16 H 1.48503 * 109.47025 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47155 * 119.99629 * 15 13 11 18 18 H 1.48503 * 109.47385 * 240.00067 * 15 13 11 19 19 C 1.52994 * 117.50099 * 279.37714 * 10 9 8 20 20 C 1.53003 * 117.49981 * 210.71935 * 10 9 8 21 21 C 1.38180 * 119.16612 * 0.24972 * 6 4 3 22 22 N 1.31854 * 119.61411 * 179.74337 * 2 1 3 23 23 H 1.09001 * 109.47033 * 270.25680 * 1 2 3 24 24 H 1.09003 * 109.46676 * 30.25055 * 1 2 3 25 25 H 1.08993 * 109.47073 * 150.25559 * 1 2 3 26 26 H 1.07997 * 120.42154 * 0.02562 * 3 2 1 27 27 H 1.08992 * 109.47148 * 269.71957 * 5 4 3 28 28 H 1.09000 * 109.46899 * 149.71513 * 5 4 3 29 29 H 1.09000 * 109.47329 * 29.72054 * 5 4 3 30 30 H 1.09008 * 109.46964 * 199.99956 * 7 6 4 31 31 H 1.08995 * 109.47270 * 319.99900 * 7 6 4 32 32 H 1.00899 * 110.99850 * 303.94811 * 8 7 6 33 33 H 1.09004 * 109.47149 * 305.35098 * 9 8 7 34 34 H 1.09011 * 109.47273 * 65.35004 * 9 8 7 35 35 H 0.97001 * 120.00448 * 179.97438 * 14 13 11 36 36 H 1.09002 * 117.50013 * 0.02562 * 19 10 9 37 37 H 1.09011 * 117.49656 * 145.01799 * 19 10 9 38 38 H 1.09003 * 117.49881 * 214.98549 * 20 10 9 39 39 H 1.09000 * 117.49695 * 359.97438 * 20 10 9 40 40 H 1.07998 * 119.62047 * 179.97438 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5765 1.1906 -0.0048 5 6 4.3582 2.4789 -0.0095 6 6 4.2267 -0.0342 0.0006 7 6 5.7322 -0.0988 0.0010 8 7 6.2318 0.1266 1.3640 9 6 7.6992 0.0700 1.4029 10 6 8.1753 0.1754 2.8531 11 6 7.7829 -0.9696 3.7508 12 1 6.8905 -0.9007 4.3552 13 6 8.5632 -2.1053 3.8005 14 7 9.5774 -2.2431 2.9747 15 14 8.1797 -3.4484 5.0408 16 1 6.9968 -3.0542 5.8475 17 1 7.8890 -4.7160 4.3239 18 1 9.3479 -3.6431 5.9368 19 6 8.2396 1.5714 3.4759 20 6 9.5311 0.8382 3.1052 21 6 3.4767 -1.1948 0.0054 22 7 2.1586 -1.1463 0.0051 23 1 -0.3633 0.0046 1.0277 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3633 -0.8922 -0.5098 26 1 1.6508 2.1373 0.0004 27 1 4.5474 2.7854 -1.0382 28 1 5.3072 2.3300 0.5056 29 1 3.7855 3.2533 0.5008 30 1 6.0539 -1.0808 -0.3462 31 1 6.1290 0.6692 -0.6630 32 1 5.8935 1.0027 1.7328 33 1 8.0378 -0.8745 0.9770 34 1 8.1102 0.8976 0.8245 35 1 10.1266 -3.0419 3.0100 36 1 7.9423 2.4148 2.8526 37 1 7.9983 1.6615 4.5351 38 1 10.1391 0.4462 3.9205 39 1 10.0840 1.1988 2.2378 40 1 3.9754 -2.1526 0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397046563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:50 Heat of formation + Delta-G solvation = 30.887677 kcal Electronic energy + Delta-G solvation = -19146.258328 eV Core-core repulsion = 16346.380231 eV Total energy + Delta-G solvation = -2799.878097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37311 -38.84608 -36.73929 -34.44634 -33.90037 -33.43981 -29.93220 -28.50823 -27.65854 -26.51061 -24.49918 -23.55711 -22.80619 -21.43706 -20.86415 -18.24170 -17.78512 -16.94397 -16.55741 -16.28829 -15.94144 -15.71976 -15.26002 -15.08014 -14.79714 -14.10635 -14.07553 -13.80259 -13.50364 -13.38845 -13.24161 -13.01190 -12.96598 -12.90540 -12.89033 -12.56320 -12.34375 -12.09033 -11.97970 -11.35055 -10.74030 -10.42333 -10.35327 -10.31222 -9.94602 -9.69979 -9.05188 -8.04017 -6.09289 0.17757 0.34107 1.39599 1.43182 1.52991 2.47368 2.75672 3.26181 3.36143 3.47054 3.71582 3.75104 3.84762 4.01436 4.03325 4.37184 4.44254 4.48726 4.57359 4.62271 4.71460 4.72099 4.73276 4.76917 4.82075 4.84181 4.95405 5.00127 5.07906 5.08339 5.23571 5.25291 5.29950 5.46883 5.65646 5.75475 5.86262 5.88946 6.31884 6.50310 6.71501 6.93857 7.09187 7.55839 9.05070 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.005210 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.472724 B = 5372.663377 C = 6185.902552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.107 3.893 3 C -0.173 4.173 4 C -0.038 4.038 5 C -0.116 4.116 6 C -0.142 4.142 7 C 0.109 3.891 8 N -0.675 5.675 9 C 0.123 3.877 10 C 0.023 3.977 11 C -0.478 4.478 12 H 0.043 0.957 13 C 0.024 3.976 14 N -0.910 5.910 15 Si 0.940 3.060 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.282 1.282 19 C -0.187 4.187 20 C -0.164 4.164 21 C 0.104 3.896 22 N -0.519 5.519 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.165 0.835 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.337 0.663 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.256 0.744 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.461 10.058 -8.395 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.031 4.031 3 C -0.192 4.192 4 C -0.047 4.047 5 C -0.173 4.173 6 C -0.144 4.144 7 C -0.020 4.020 8 N -0.307 5.307 9 C -0.006 4.006 10 C 0.022 3.978 11 C -0.516 4.516 12 H 0.061 0.939 13 C -0.175 4.175 14 N -0.549 5.549 15 Si 0.767 3.233 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.208 1.208 19 C -0.225 4.225 20 C -0.202 4.202 21 C -0.053 4.053 22 N -0.229 5.229 23 H 0.102 0.898 24 H 0.118 0.882 25 H 0.090 0.910 26 H 0.182 0.818 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.156 0.844 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.862 8.492 -8.247 18.228 hybrid contribution 1.135 0.218 0.355 1.209 sum -12.727 8.710 -7.892 17.324 Atomic orbital electron populations 1.20769 0.86707 1.04316 1.03750 1.21901 0.98583 0.88312 0.94287 1.22117 0.93724 1.00105 1.03298 1.20528 0.94558 0.95512 0.94063 1.20913 0.99513 0.93036 1.03802 1.20709 0.96525 0.94203 1.02987 1.20679 0.89592 1.01400 0.90328 1.60229 1.09717 1.40560 1.20151 1.21213 0.86020 0.97788 0.95580 1.18933 0.95878 0.90425 0.92549 1.20534 1.08089 1.00009 1.22963 0.93885 1.25516 0.95322 0.99645 0.96997 1.70098 1.19237 1.28163 1.37432 0.85790 0.77860 0.79820 0.79825 1.19819 1.21177 1.20763 1.22977 1.02677 0.96452 1.00363 1.22432 0.91308 1.05276 1.01205 1.22679 0.89329 0.98518 0.94775 1.67539 1.09943 1.30870 1.14557 0.89813 0.88194 0.91028 0.81791 0.89059 0.92111 0.88868 0.91430 0.93415 0.84409 0.93787 0.96894 0.93519 0.89015 0.90828 0.92570 0.90807 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.17 71.24 0.72 -0.91 16 2 C 0.11 2.65 6.78 42.55 0.29 2.94 16 3 C -0.17 -3.74 9.45 22.36 0.21 -3.53 16 4 C -0.04 -0.93 5.92 -19.67 -0.12 -1.05 16 5 C -0.12 -2.15 9.35 71.23 0.67 -1.48 16 6 C -0.14 -4.21 5.41 -19.78 -0.11 -4.32 16 7 C 0.11 3.46 5.07 85.56 0.43 3.89 16 8 N -0.67 -25.60 6.35 -517.91 -3.29 -28.89 16 9 C 0.12 5.32 5.51 86.30 0.48 5.80 16 10 C 0.02 1.10 1.55 -52.93 -0.08 1.02 16 11 C -0.48 -26.37 8.74 25.60 0.22 -26.15 16 12 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 13 C 0.02 1.35 5.39 84.66 0.46 1.81 16 14 N -0.91 -52.47 12.92 21.45 0.28 -52.19 16 15 Si 0.94 45.04 29.54 68.60 2.03 47.06 16 16 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 17 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 19 C -0.19 -7.71 9.96 30.61 0.30 -7.41 16 20 C -0.16 -7.57 9.41 30.62 0.29 -7.28 16 21 C 0.10 3.31 10.83 84.67 0.92 4.23 16 22 N -0.52 -16.14 10.27 -183.88 -1.89 -18.03 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.10 1.07 8.08 -2.39 -0.02 1.05 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.29 5.45 -2.39 -0.01 1.28 16 29 H 0.09 1.33 8.10 -2.39 -0.02 1.31 16 30 H 0.07 2.28 8.02 -2.38 -0.02 2.26 16 31 H 0.05 1.34 7.38 -2.39 -0.02 1.32 16 32 H 0.34 11.78 7.12 -89.69 -0.64 11.14 16 33 H 0.04 2.19 8.13 -2.38 -0.02 2.17 16 34 H 0.01 0.51 8.09 -2.38 -0.02 0.49 16 35 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 36 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 38 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.15 4.70 8.04 -2.91 -0.02 4.68 16 Total: -1.00 -64.48 333.53 2.19 -62.29 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.38 Total: 22.21 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 4.68 Total: -32.45 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -4.90 Total: -99.12 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.48 2.19 -62.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397046563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.179 kcal (2) G-P(sol) polarization free energy of solvation -64.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds