Wall clock time and date at job start Mon Mar 30 2020 07:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47067 * 2 1 4 4 C 1.52998 * 115.55189 * 325.67163 * 3 2 1 5 5 C 1.53080 * 117.49458 * 111.39649 * 3 2 1 6 6 C 1.52998 * 117.49785 * 180.02562 * 3 2 1 7 7 H 1.08999 * 117.50384 * 0.02562 * 6 3 2 8 8 N 1.46499 * 117.50143 * 145.02421 * 6 3 2 9 9 C 1.39850 * 120.00247 * 204.91423 * 8 6 3 10 10 C 1.39594 * 119.84025 * 359.72004 * 9 8 6 11 11 C 1.38064 * 120.55454 * 180.27844 * 10 9 8 12 12 C 1.38734 * 120.21559 * 359.97438 * 11 10 9 13 13 N 1.38860 * 120.16291 * 180.02562 * 12 11 10 14 14 C 1.41565 * 119.67545 * 359.97438 * 12 11 10 15 15 C 1.41021 * 120.26569 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00146 * 329.63983 * 15 14 12 17 17 C 1.39887 * 119.99932 * 149.64732 * 15 14 12 18 18 N 1.30903 * 119.99749 * 162.17810 * 17 15 14 19 19 Si 1.86800 * 120.00006 * 342.17413 * 17 15 14 20 20 H 1.48498 * 109.47105 * 95.38945 * 19 17 15 21 21 H 1.48500 * 109.46926 * 215.39327 * 19 17 15 22 22 H 1.48499 * 109.47072 * 335.38790 * 19 17 15 23 23 C 1.38009 * 119.84096 * 179.97438 * 9 8 6 24 24 H 1.09005 * 109.46636 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47060 * 299.99857 * 1 2 3 26 26 H 1.09000 * 109.47161 * 60.00345 * 1 2 3 27 27 H 1.09002 * 109.47344 * 239.99518 * 2 1 3 28 28 H 1.09006 * 109.46928 * 120.00044 * 2 1 3 29 29 H 1.09007 * 109.46744 * 274.33086 * 4 3 2 30 30 H 1.09005 * 109.46929 * 34.32564 * 4 3 2 31 31 H 1.08996 * 109.47494 * 154.32739 * 4 3 2 32 32 H 1.08999 * 117.49382 * 0.02562 * 5 3 2 33 33 H 1.08994 * 117.51399 * 214.96193 * 5 3 2 34 34 H 0.97006 * 119.99726 * 24.90695 * 8 6 3 35 35 H 1.08005 * 119.72364 * 0.27205 * 10 9 8 36 36 H 1.08000 * 119.89223 * 179.97438 * 11 10 9 37 37 H 0.96995 * 120.00720 * 179.97438 * 13 12 11 38 38 H 0.97006 * 120.00108 * 359.97438 * 13 12 11 39 39 H 0.97005 * 119.99421 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.11518 * 359.74767 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4446 -0.7784 5 6 2.7426 1.9436 1.2643 6 6 3.5550 1.6561 -0.0006 7 1 4.1884 0.7691 -0.0014 8 7 4.0758 2.8050 -0.7455 9 6 5.3880 2.7884 -1.2290 10 6 6.2005 1.6777 -0.9947 11 6 7.5000 1.6480 -1.4602 12 6 8.0127 2.7252 -2.1684 13 7 9.3197 2.6939 -2.6365 14 6 7.1967 3.8560 -2.4123 15 6 7.7053 4.9580 -3.1302 16 1 8.7575 5.1964 -3.0797 17 6 6.8470 5.7426 -3.9077 18 7 7.2177 6.9396 -4.2865 19 14 5.1721 5.0822 -4.4056 20 1 4.1463 5.5582 -3.4431 21 1 4.8345 5.5659 -5.7684 22 1 5.2041 3.5976 -4.4011 23 6 5.8751 3.8723 -1.9308 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.4778 2.4331 -1.8284 30 1 0.1339 2.1704 -0.6911 31 1 1.3351 3.4441 -0.3704 32 1 2.8416 1.2453 2.0954 33 1 2.5959 2.9874 1.5417 34 1 3.5105 3.5773 -0.9036 35 1 5.8094 0.8346 -0.4446 36 1 8.1193 0.7834 -1.2725 37 1 9.6757 3.4482 -3.1317 38 1 9.8767 1.9177 -2.4684 39 1 6.6223 7.4838 -4.8253 40 1 5.2437 4.7299 -2.1101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397480851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:37 Heat of formation + Delta-G solvation = 38.564281 kcal Electronic energy + Delta-G solvation = -19297.080960 eV Core-core repulsion = 16497.535745 eV Total energy + Delta-G solvation = -2799.545215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.06193 -37.81434 -34.66999 -33.39195 -32.34892 -30.56939 -30.22845 -28.13398 -26.29153 -24.76249 -23.77999 -22.06960 -21.22362 -19.59363 -18.61528 -17.24554 -16.44389 -15.98540 -15.44590 -15.00074 -14.78900 -14.55987 -14.15890 -13.28594 -13.13150 -12.83896 -12.71006 -12.47474 -12.23742 -12.09280 -12.04738 -11.78533 -11.47379 -11.35001 -11.11212 -10.95626 -10.80431 -10.72085 -10.51162 -9.82750 -9.62630 -9.57172 -9.33592 -9.01992 -7.82488 -7.50173 -6.80837 -5.80172 -4.20107 2.75794 3.00253 3.19911 3.34453 3.44156 3.96931 4.08241 4.11223 4.68225 4.83418 4.86790 5.02665 5.15950 5.24918 5.28410 5.47217 5.55025 5.60837 5.79573 5.84522 5.90880 5.92326 6.02284 6.06270 6.12504 6.17379 6.21408 6.40268 6.43089 6.73465 6.82971 7.16269 7.28577 7.41589 7.53112 7.73050 7.97263 8.30075 8.44409 8.57995 8.65449 8.89032 9.07213 9.13864 10.22593 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.005923 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.927731 B = 4725.825043 C = 5631.643349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.150 4.150 4 C -0.120 4.120 5 C -0.200 4.200 6 C 0.122 3.878 7 H 0.125 0.875 8 N -0.729 5.729 9 C 0.197 3.803 10 C -0.254 4.254 11 C -0.144 4.144 12 C 0.099 3.901 13 N -0.885 5.885 14 C 0.082 3.918 15 C -0.451 4.451 16 H 0.087 0.913 17 C 0.085 3.915 18 N -0.822 5.822 19 Si 0.914 3.086 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.245 1.245 23 C -0.271 4.271 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.389 0.611 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.393 0.607 38 H 0.377 0.623 39 H 0.281 0.719 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 -9.747 5.965 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.152 4.152 4 C -0.177 4.177 5 C -0.240 4.240 6 C 0.013 3.987 7 H 0.143 0.857 8 N -0.359 5.359 9 C 0.099 3.901 10 C -0.278 4.278 11 C -0.169 4.169 12 C -0.003 4.003 13 N -0.428 5.428 14 C 0.076 3.924 15 C -0.481 4.481 16 H 0.105 0.895 17 C -0.132 4.132 18 N -0.448 5.448 19 Si 0.742 3.258 20 H -0.203 1.203 21 H -0.226 1.226 22 H -0.168 1.168 23 C -0.295 4.295 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.223 0.777 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.222 0.778 38 H 0.202 0.798 39 H 0.091 0.909 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.461 -9.612 5.892 14.717 hybrid contribution -0.686 0.257 -0.342 0.808 sum -10.147 -9.355 5.550 14.875 Atomic orbital electron populations 1.21820 0.95918 1.01077 1.01901 1.21008 0.95624 0.93627 1.01801 1.22070 0.95624 0.96274 1.01202 1.21371 0.99190 0.97290 0.99861 1.23779 1.06139 1.01771 0.92296 1.21487 0.90543 0.92237 0.94472 0.85721 1.43857 1.12081 1.18094 1.61852 1.17321 0.83144 0.94593 0.95067 1.19649 0.95116 0.98618 1.14372 1.19797 0.95707 0.97303 1.04053 1.17759 0.86688 0.94458 1.01348 1.41868 1.11928 1.22415 1.66542 1.17111 0.90689 0.91222 0.93392 1.19088 0.97286 1.07427 1.24281 0.89538 1.26043 0.99803 0.93215 0.94113 1.69740 1.38248 1.07629 1.29134 0.86247 0.81236 0.82071 0.76230 1.20310 1.22566 1.16797 1.20196 0.98339 0.99029 1.11961 0.93103 0.92771 0.92292 0.91706 0.91955 0.92174 0.91700 0.92866 0.88985 0.89162 0.77677 0.88949 0.89094 0.77837 0.79794 0.90889 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.92 37.16 0.33 -1.04 16 2 C -0.08 -0.88 6.12 -26.73 -0.16 -1.05 16 3 C -0.15 -1.88 2.47 -154.47 -0.38 -2.26 16 4 C -0.12 -1.47 8.49 37.16 0.32 -1.15 16 5 C -0.20 -2.57 9.76 -26.66 -0.26 -2.83 16 6 C 0.12 1.84 6.02 -67.90 -0.41 1.44 16 7 H 0.13 1.90 5.88 -51.93 -0.31 1.59 16 8 N -0.73 -13.46 5.52 -52.15 -0.29 -13.75 16 9 C 0.20 4.36 6.64 -83.78 -0.56 3.80 16 10 C -0.25 -5.40 9.32 -39.14 -0.36 -5.76 16 11 C -0.14 -3.10 9.86 -39.46 -0.39 -3.49 16 12 C 0.10 2.30 6.79 -83.23 -0.56 1.74 16 13 N -0.89 -17.58 8.98 32.75 0.29 -17.29 16 14 C 0.08 2.09 5.10 -106.66 -0.54 1.54 16 15 C -0.45 -12.18 8.91 -37.91 -0.34 -12.52 16 16 H 0.09 2.40 7.03 -52.49 -0.37 2.03 16 17 C 0.08 2.27 5.40 -17.33 -0.09 2.18 16 18 N -0.82 -22.36 13.93 55.55 0.77 -21.59 16 19 Si 0.91 21.70 24.52 -169.99 -4.17 17.53 16 20 H -0.28 -6.37 6.72 56.52 0.38 -5.99 16 21 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.24 -6.03 6.86 56.52 0.39 -5.65 16 23 C -0.27 -6.67 6.98 -38.75 -0.27 -6.94 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.54 6.45 -51.93 -0.33 0.21 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.68 5.58 -51.93 -0.29 0.39 16 31 H 0.05 0.65 7.61 -51.93 -0.40 0.26 16 32 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 33 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.39 6.96 7.70 -40.82 -0.31 6.65 16 35 H 0.09 1.74 5.86 -52.48 -0.31 1.44 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.39 7.88 7.13 -40.82 -0.29 7.59 16 38 H 0.38 6.21 8.83 -40.82 -0.36 5.85 16 39 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 40 H 0.10 2.44 4.78 -52.49 -0.25 2.19 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -28.23 314.19 -8.09 -36.32 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -5.75 Total: 20.38 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -3.69 Total: -26.34 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.78 Total: -52.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.17 Total: 17.53 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.23 -8.09 -36.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397480851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.889 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds