Wall clock time and date at job start Mon Mar 30 2020 07:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47067 * 2 1 4 4 C 1.52998 * 115.55189 * 325.67163 * 3 2 1 5 5 C 1.53080 * 117.49458 * 111.39649 * 3 2 1 6 6 C 1.52998 * 117.49785 * 180.02562 * 3 2 1 7 7 H 1.08999 * 117.50384 * 0.02562 * 6 3 2 8 8 N 1.46499 * 117.50143 * 145.02421 * 6 3 2 9 9 C 1.39850 * 120.00247 * 204.91423 * 8 6 3 10 10 C 1.39594 * 119.84025 * 359.72004 * 9 8 6 11 11 C 1.38064 * 120.55454 * 180.27844 * 10 9 8 12 12 C 1.38734 * 120.21559 * 359.97438 * 11 10 9 13 13 N 1.38860 * 120.16291 * 180.02562 * 12 11 10 14 14 C 1.41565 * 119.67545 * 359.97438 * 12 11 10 15 15 C 1.41021 * 120.26569 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00146 * 329.63983 * 15 14 12 17 17 C 1.39887 * 119.99932 * 149.64732 * 15 14 12 18 18 N 1.30903 * 119.99749 * 162.17810 * 17 15 14 19 19 Si 1.86800 * 120.00006 * 342.17413 * 17 15 14 20 20 H 1.48498 * 109.47105 * 95.38945 * 19 17 15 21 21 H 1.48500 * 109.46926 * 215.39327 * 19 17 15 22 22 H 1.48499 * 109.47072 * 335.38790 * 19 17 15 23 23 C 1.38009 * 119.84096 * 179.97438 * 9 8 6 24 24 H 1.09005 * 109.46636 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47060 * 299.99857 * 1 2 3 26 26 H 1.09000 * 109.47161 * 60.00345 * 1 2 3 27 27 H 1.09002 * 109.47344 * 239.99518 * 2 1 3 28 28 H 1.09006 * 109.46928 * 120.00044 * 2 1 3 29 29 H 1.09007 * 109.46744 * 274.33086 * 4 3 2 30 30 H 1.09005 * 109.46929 * 34.32564 * 4 3 2 31 31 H 1.08996 * 109.47494 * 154.32739 * 4 3 2 32 32 H 1.08999 * 117.49382 * 0.02562 * 5 3 2 33 33 H 1.08994 * 117.51399 * 214.96193 * 5 3 2 34 34 H 0.97006 * 119.99726 * 24.90695 * 8 6 3 35 35 H 1.08005 * 119.72364 * 0.27205 * 10 9 8 36 36 H 1.08000 * 119.89223 * 179.97438 * 11 10 9 37 37 H 0.96995 * 120.00720 * 179.97438 * 13 12 11 38 38 H 0.97006 * 120.00108 * 359.97438 * 13 12 11 39 39 H 0.97005 * 119.99421 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.11518 * 359.74767 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4446 -0.7784 5 6 2.7426 1.9436 1.2643 6 6 3.5550 1.6561 -0.0006 7 1 4.1884 0.7691 -0.0014 8 7 4.0758 2.8050 -0.7455 9 6 5.3880 2.7884 -1.2290 10 6 6.2005 1.6777 -0.9947 11 6 7.5000 1.6480 -1.4602 12 6 8.0127 2.7252 -2.1684 13 7 9.3197 2.6939 -2.6365 14 6 7.1967 3.8560 -2.4123 15 6 7.7053 4.9580 -3.1302 16 1 8.7575 5.1964 -3.0797 17 6 6.8470 5.7426 -3.9077 18 7 7.2177 6.9396 -4.2865 19 14 5.1721 5.0822 -4.4056 20 1 4.1463 5.5582 -3.4431 21 1 4.8345 5.5659 -5.7684 22 1 5.2041 3.5976 -4.4011 23 6 5.8751 3.8723 -1.9308 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.4778 2.4331 -1.8284 30 1 0.1339 2.1704 -0.6911 31 1 1.3351 3.4441 -0.3704 32 1 2.8416 1.2453 2.0954 33 1 2.5959 2.9874 1.5417 34 1 3.5105 3.5773 -0.9036 35 1 5.8094 0.8346 -0.4446 36 1 8.1193 0.7834 -1.2725 37 1 9.6757 3.4482 -3.1317 38 1 9.8767 1.9177 -2.4684 39 1 6.6223 7.4838 -4.8253 40 1 5.2437 4.7299 -2.1101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397480851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:36 Heat of formation + Delta-G solvation = 21.314401 kcal Electronic energy + Delta-G solvation = -19297.828970 eV Core-core repulsion = 16497.535745 eV Total energy + Delta-G solvation = -2800.293226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37967 -39.34398 -36.18736 -35.29701 -33.57134 -32.13367 -31.82603 -29.11895 -27.98812 -26.56483 -24.60986 -23.68803 -22.70433 -21.24031 -19.70064 -19.04187 -18.06433 -17.62947 -16.94328 -16.47967 -16.32031 -15.62655 -15.33287 -14.97950 -14.59270 -14.35052 -14.15266 -13.93031 -13.72134 -13.37090 -13.27766 -13.04213 -12.87902 -12.62040 -12.58363 -12.45066 -12.32082 -11.94037 -11.75903 -11.61628 -11.41913 -10.93484 -10.90761 -10.49164 -9.39124 -9.28279 -8.79067 -7.48693 -6.15998 0.90885 1.18467 1.27282 1.50860 1.51896 2.18374 2.64299 2.75294 2.98118 3.67172 3.70938 3.82755 3.88735 4.05346 4.15622 4.40230 4.44720 4.52336 4.71831 4.74413 4.82997 4.92026 4.93264 4.96990 4.98057 5.09120 5.12136 5.21261 5.32102 5.36833 5.38762 5.47803 5.55358 5.67758 5.78856 5.97705 6.19211 6.33632 6.66523 6.86793 6.95744 7.07075 7.29906 7.58163 8.29825 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.005923 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.927731 B = 4725.825043 C = 5631.643349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.123 4.123 5 C -0.186 4.186 6 C 0.089 3.911 7 H 0.127 0.873 8 N -0.728 5.728 9 C 0.191 3.809 10 C -0.243 4.243 11 C -0.142 4.142 12 C 0.084 3.916 13 N -0.877 5.877 14 C 0.052 3.948 15 C -0.475 4.475 16 H 0.063 0.937 17 C 0.049 3.951 18 N -0.863 5.863 19 Si 0.966 3.034 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.260 1.260 23 C -0.283 4.283 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.390 0.610 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.390 0.610 38 H 0.394 0.606 39 H 0.287 0.713 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -12.397 7.482 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.136 4.136 4 C -0.180 4.180 5 C -0.225 4.225 6 C -0.018 4.018 7 H 0.144 0.856 8 N -0.357 5.357 9 C 0.090 3.910 10 C -0.266 4.266 11 C -0.167 4.167 12 C -0.019 4.019 13 N -0.420 5.420 14 C 0.046 3.954 15 C -0.506 4.506 16 H 0.081 0.919 17 C -0.163 4.163 18 N -0.491 5.491 19 Si 0.793 3.207 20 H -0.196 1.196 21 H -0.215 1.215 22 H -0.184 1.184 23 C -0.307 4.307 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.223 0.777 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.218 0.782 38 H 0.223 0.777 39 H 0.097 0.903 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.322 -12.292 7.435 18.291 hybrid contribution -0.141 0.883 -0.637 1.098 sum -11.464 -11.409 6.798 17.544 Atomic orbital electron populations 1.21801 0.94659 1.02036 1.02008 1.21055 0.96702 0.92099 1.02210 1.22155 0.93499 0.97560 1.00436 1.21413 1.00448 0.97231 0.98888 1.23801 1.04262 1.02140 0.92294 1.21727 0.92341 0.91306 0.96402 0.85583 1.43895 1.10784 1.19258 1.61791 1.17430 0.84876 0.94110 0.94580 1.20102 0.94820 0.98876 1.12837 1.20205 0.96195 0.97603 1.02682 1.17973 0.87637 0.94401 1.01842 1.41785 1.11176 1.23053 1.66034 1.17281 0.91838 0.91869 0.94369 1.19098 0.96418 1.09041 1.26041 0.91912 1.26588 1.02267 0.93330 0.94120 1.69772 1.39654 1.08586 1.31105 0.85454 0.78574 0.80303 0.76418 1.19576 1.21525 1.18440 1.20280 0.98085 0.99676 1.12642 0.91817 0.92340 0.92485 0.92109 0.90787 0.93569 0.89694 0.93217 0.86981 0.89587 0.77653 0.85959 0.85829 0.78175 0.77739 0.90323 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.92 71.98 0.64 -1.54 16 2 C -0.08 -1.48 6.12 30.59 0.19 -1.29 16 3 C -0.13 -2.98 2.47 -52.16 -0.13 -3.11 16 4 C -0.12 -2.73 8.49 71.98 0.61 -2.12 16 5 C -0.19 -4.17 9.76 30.64 0.30 -3.88 16 6 C 0.09 2.47 6.02 45.01 0.27 2.74 16 7 H 0.13 3.41 5.88 -2.39 -0.01 3.40 16 8 N -0.73 -25.73 5.52 -318.89 -1.76 -27.49 16 9 C 0.19 8.17 6.64 38.13 0.25 8.42 16 10 C -0.24 -9.65 9.32 22.56 0.21 -9.44 16 11 C -0.14 -5.75 9.86 22.35 0.22 -5.53 16 12 C 0.08 3.86 6.79 38.97 0.26 4.12 16 13 N -0.88 -34.41 8.98 -50.31 -0.45 -34.86 16 14 C 0.05 2.70 5.10 -21.18 -0.11 2.59 16 15 C -0.47 -26.71 8.91 23.35 0.21 -26.50 16 16 H 0.06 3.69 7.03 -2.91 -0.02 3.67 16 17 C 0.05 2.71 5.40 85.23 0.46 3.17 16 18 N -0.86 -48.81 13.93 21.82 0.30 -48.51 16 19 Si 0.97 45.93 24.52 68.60 1.68 47.61 16 20 H -0.27 -12.29 6.72 99.48 0.67 -11.63 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.26 -12.85 6.86 99.48 0.68 -12.17 16 23 C -0.28 -13.94 6.98 22.81 0.16 -13.78 16 24 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.87 6.45 -2.39 -0.02 0.85 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.16 7.90 -2.38 -0.02 1.14 16 29 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.08 1.54 5.58 -2.38 -0.01 1.53 16 31 H 0.05 1.13 7.61 -2.39 -0.02 1.11 16 32 H 0.11 2.09 8.05 -2.39 -0.02 2.07 16 33 H 0.09 2.04 8.05 -2.39 -0.02 2.02 16 34 H 0.39 13.55 7.70 -92.70 -0.71 12.84 16 35 H 0.12 4.11 5.86 -2.91 -0.02 4.09 16 36 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.39 15.98 7.13 -92.71 -0.66 15.31 16 38 H 0.39 12.38 8.83 -92.70 -0.82 11.56 16 39 H 0.29 14.81 8.30 -92.70 -0.77 14.04 16 40 H 0.09 4.41 4.78 -2.91 -0.01 4.39 16 Total: -1.00 -61.62 314.19 2.15 -59.47 By element: Atomic # 1 Polarization: 51.09 SS G_CDS: -1.18 Total: 49.92 kcal Atomic # 6 Polarization: -49.69 SS G_CDS: 3.55 Total: -46.14 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -1.91 Total: -110.86 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.68 Total: 47.61 kcal Total: -61.62 2.15 -59.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397480851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.786 kcal (2) G-P(sol) polarization free energy of solvation -61.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds