Wall clock time and date at job start Mon Mar 30 2020 07:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47376 * 2 1 4 4 C 1.53001 * 115.54854 * 34.33111 * 3 2 1 5 5 C 1.53077 * 117.53256 * 248.61944 * 3 2 1 6 6 C 1.52999 * 59.98361 * 252.52590 * 5 3 2 7 7 H 1.08996 * 117.50266 * 252.50293 * 6 5 3 8 8 N 1.46499 * 117.49639 * 107.50023 * 6 5 3 9 9 C 1.39857 * 120.00058 * 136.25242 * 8 6 5 10 10 C 1.39599 * 119.83633 * 0.02562 * 9 8 6 11 11 C 1.38058 * 120.54535 * 180.02562 * 10 9 8 12 12 C 1.38737 * 120.22040 * 359.97438 * 11 10 9 13 13 N 1.38866 * 120.15732 * 180.02562 * 12 11 10 14 14 C 1.41553 * 119.67535 * 0.02562 * 12 11 10 15 15 C 1.41025 * 120.26751 * 180.02562 * 14 12 11 16 16 H 1.08006 * 120.00539 * 333.60917 * 15 14 12 17 17 C 1.39888 * 119.99892 * 153.60063 * 15 14 12 18 18 N 1.30897 * 120.00145 * 344.00518 * 17 15 14 19 19 Si 1.86802 * 119.99778 * 164.00328 * 17 15 14 20 20 H 1.48505 * 109.46888 * 90.00415 * 19 17 15 21 21 H 1.48495 * 109.47290 * 210.00143 * 19 17 15 22 22 H 1.48499 * 109.47493 * 330.00577 * 19 17 15 23 23 C 1.38000 * 119.83973 * 180.02562 * 9 8 6 24 24 H 1.09006 * 109.46486 * 299.99538 * 1 2 3 25 25 H 1.08997 * 109.47308 * 59.99848 * 1 2 3 26 26 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46995 * 240.00398 * 2 1 3 28 28 H 1.09002 * 109.47770 * 120.00129 * 2 1 3 29 29 H 1.08999 * 109.47233 * 205.67439 * 4 3 2 30 30 H 1.09000 * 109.47015 * 325.67447 * 4 3 2 31 31 H 1.08997 * 109.46739 * 85.67085 * 4 3 2 32 32 H 1.09001 * 117.48942 * 145.04311 * 5 3 2 33 33 H 1.08999 * 117.51661 * 0.02562 * 5 3 2 34 34 H 0.97004 * 119.99993 * 316.25536 * 8 6 5 35 35 H 1.07998 * 119.72566 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.88580 * 179.71652 * 11 10 9 37 37 H 0.97000 * 120.00833 * 0.02562 * 13 12 11 38 38 H 0.97000 * 119.99494 * 180.02562 * 13 12 11 39 39 H 0.97000 * 119.99868 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.11836 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1853 2.4446 0.7785 5 6 2.7425 1.9446 -1.2640 6 6 3.5550 1.6562 -0.0001 7 1 3.9428 2.5104 0.5549 8 7 4.4063 0.4639 -0.0007 9 6 5.7067 0.5329 0.5094 10 6 6.1899 1.7395 1.0187 11 6 7.4714 1.8242 1.5253 12 6 8.2942 0.7073 1.5337 13 7 9.5828 0.7939 2.0441 14 6 7.8138 -0.5210 1.0196 15 6 8.6394 -1.6643 1.0225 16 1 9.7137 -1.5549 1.0000 17 6 8.0669 -2.9403 1.0547 18 7 6.8111 -3.0858 1.3938 19 14 9.0947 -4.4365 0.6135 20 1 9.7450 -4.9687 1.8379 21 1 8.2201 -5.4814 0.0235 22 1 10.1363 -4.0487 -0.3714 23 6 6.5059 -0.5921 0.5067 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.3351 3.4442 0.3705 30 1 0.1340 2.1704 0.6913 31 1 1.4779 2.4331 1.8284 32 1 2.5954 2.9887 -1.5403 33 1 2.8410 1.2475 -2.0961 34 1 4.0680 -0.3734 -0.3549 35 1 5.5563 2.6141 1.0157 36 1 7.8359 2.7643 1.9125 37 1 9.9095 1.6366 2.3962 38 1 10.1562 0.0115 2.0485 39 1 6.4140 -3.9706 1.4158 40 1 6.1289 -1.5238 0.1114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397480853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:42 Heat of formation + Delta-G solvation = 38.857344 kcal Electronic energy + Delta-G solvation = -19201.051324 eV Core-core repulsion = 16401.518817 eV Total energy + Delta-G solvation = -2799.532507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.87808 -37.54300 -34.40509 -33.44337 -32.06613 -30.62564 -29.40862 -27.89983 -25.99226 -24.77222 -23.72677 -21.98359 -20.75071 -19.65717 -18.35729 -17.10800 -16.13835 -15.63487 -15.21718 -15.07171 -14.64116 -14.48515 -13.72736 -13.36343 -13.05321 -12.65429 -12.39405 -12.31080 -12.04542 -11.84227 -11.76364 -11.59755 -11.33601 -11.14973 -11.03016 -10.96491 -10.75482 -10.67871 -10.34064 -9.93891 -9.46720 -9.29631 -9.21312 -9.04515 -7.63669 -7.22029 -6.61144 -5.52665 -4.06152 2.90867 3.13461 3.17565 3.30890 3.42602 4.03728 4.15232 4.28674 4.81508 4.90173 5.03293 5.23712 5.27389 5.42382 5.43730 5.62815 5.67028 5.88179 5.91024 5.93102 6.01269 6.03717 6.15802 6.25326 6.27799 6.37287 6.37367 6.55283 6.66211 7.12053 7.15359 7.32171 7.47637 7.71583 7.87361 7.98791 8.12419 8.45940 8.74129 8.89139 8.93666 8.99800 9.25997 9.34071 10.37903 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.005488 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.592432 B = 5100.427892 C = 6209.611285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.117 4.117 5 C -0.204 4.204 6 C 0.126 3.874 7 H 0.122 0.878 8 N -0.727 5.727 9 C 0.176 3.824 10 C -0.254 4.254 11 C -0.152 4.152 12 C 0.085 3.915 13 N -0.889 5.889 14 C 0.096 3.904 15 C -0.465 4.465 16 H 0.071 0.929 17 C 0.077 3.923 18 N -0.800 5.800 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.199 4.199 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.389 0.611 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.374 0.626 38 H 0.389 0.611 39 H 0.275 0.725 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 5.274 -2.108 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.153 4.153 4 C -0.174 4.174 5 C -0.244 4.244 6 C 0.016 3.984 7 H 0.140 0.860 8 N -0.357 5.357 9 C 0.078 3.922 10 C -0.277 4.277 11 C -0.176 4.176 12 C -0.015 4.015 13 N -0.431 5.431 14 C 0.091 3.909 15 C -0.496 4.496 16 H 0.089 0.911 17 C -0.139 4.139 18 N -0.427 5.427 19 Si 0.726 3.274 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.223 4.223 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.223 0.777 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.199 0.801 38 H 0.217 0.783 39 H 0.085 0.915 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.152 5.213 -2.055 9.892 hybrid contribution 0.533 -1.016 -0.206 1.166 sum -7.619 4.196 -2.261 8.987 Atomic orbital electron populations 1.21815 0.96094 1.01060 1.01573 1.20931 0.95277 0.93934 1.02093 1.22052 0.95782 0.96284 1.01152 1.21415 0.99284 0.97120 0.99547 1.23773 1.06529 1.01309 0.92761 1.21440 0.86745 0.91748 0.98428 0.86008 1.43784 1.12019 1.09454 1.70476 1.17493 0.83639 0.94402 0.96631 1.19644 0.96975 0.95596 1.15500 1.19709 0.94777 0.95553 1.07607 1.17865 0.86548 0.94890 1.02240 1.41808 1.14178 1.13107 1.74034 1.16951 0.92441 0.90262 0.91259 1.19118 0.93988 0.90052 1.46419 0.91106 1.25742 0.95047 1.00329 0.92783 1.69877 1.13105 1.24643 1.35057 0.86449 0.80563 0.80910 0.79493 1.19850 1.20391 1.18781 1.20468 0.95681 0.96224 1.09918 0.92407 0.92958 0.93148 0.92196 0.91336 0.92851 0.91804 0.92409 0.89223 0.89304 0.77674 0.89543 0.89731 0.80100 0.78340 0.91461 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.92 37.16 0.33 -1.28 16 2 C -0.08 -1.12 5.12 -26.73 -0.14 -1.26 16 3 C -0.15 -2.04 2.47 -154.47 -0.38 -2.42 16 4 C -0.12 -1.35 9.49 37.16 0.35 -0.99 16 5 C -0.20 -2.83 9.75 -26.69 -0.26 -3.09 16 6 C 0.13 2.06 6.01 -67.93 -0.41 1.65 16 7 H 0.12 2.04 5.88 -51.93 -0.31 1.73 16 8 N -0.73 -14.25 5.52 -52.17 -0.29 -14.54 16 9 C 0.18 4.14 6.64 -83.78 -0.56 3.58 16 10 C -0.25 -5.79 9.32 -39.14 -0.36 -6.16 16 11 C -0.15 -3.51 9.86 -39.46 -0.39 -3.90 16 12 C 0.09 2.08 6.79 -83.23 -0.56 1.52 16 13 N -0.89 -18.28 8.98 32.75 0.29 -17.99 16 14 C 0.10 2.56 5.57 -106.66 -0.59 1.97 16 15 C -0.46 -12.24 8.48 -37.91 -0.32 -12.56 16 16 H 0.07 1.77 6.71 -52.48 -0.35 1.42 16 17 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 18 N -0.80 -20.98 10.97 55.55 0.61 -20.37 16 19 Si 0.90 18.98 29.59 -169.99 -5.03 13.95 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.20 -5.18 8.49 -38.75 -0.33 -5.51 16 24 H 0.06 0.59 6.45 -51.93 -0.33 0.26 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.80 7.61 -51.92 -0.40 0.41 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 30 H 0.06 0.65 5.58 -51.93 -0.29 0.36 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 33 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 34 H 0.39 7.41 7.70 -40.82 -0.31 7.09 16 35 H 0.09 1.78 5.86 -52.49 -0.31 1.47 16 36 H 0.08 1.74 8.06 -52.48 -0.42 1.31 16 37 H 0.37 6.51 8.83 -40.82 -0.36 6.15 16 38 H 0.39 7.84 7.06 -40.82 -0.29 7.55 16 39 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.12 3.16 6.23 -52.48 -0.33 2.84 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -27.82 319.29 -9.08 -36.90 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -5.77 Total: 23.82 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -3.71 Total: -26.59 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.62 Total: -52.90 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.82 -9.08 -36.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397480853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.759 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds