Wall clock time and date at job start Mon Mar 30 2020 07:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47376 * 2 1 4 4 C 1.53001 * 115.54854 * 34.33111 * 3 2 1 5 5 C 1.53077 * 117.53256 * 248.61944 * 3 2 1 6 6 C 1.52999 * 59.98361 * 252.52590 * 5 3 2 7 7 H 1.08996 * 117.50266 * 252.50293 * 6 5 3 8 8 N 1.46499 * 117.49639 * 107.50023 * 6 5 3 9 9 C 1.39857 * 120.00058 * 136.25242 * 8 6 5 10 10 C 1.39599 * 119.83633 * 0.02562 * 9 8 6 11 11 C 1.38058 * 120.54535 * 180.02562 * 10 9 8 12 12 C 1.38737 * 120.22040 * 359.97438 * 11 10 9 13 13 N 1.38866 * 120.15732 * 180.02562 * 12 11 10 14 14 C 1.41553 * 119.67535 * 0.02562 * 12 11 10 15 15 C 1.41025 * 120.26751 * 180.02562 * 14 12 11 16 16 H 1.08006 * 120.00539 * 333.60917 * 15 14 12 17 17 C 1.39888 * 119.99892 * 153.60063 * 15 14 12 18 18 N 1.30897 * 120.00145 * 344.00518 * 17 15 14 19 19 Si 1.86802 * 119.99778 * 164.00328 * 17 15 14 20 20 H 1.48505 * 109.46888 * 90.00415 * 19 17 15 21 21 H 1.48495 * 109.47290 * 210.00143 * 19 17 15 22 22 H 1.48499 * 109.47493 * 330.00577 * 19 17 15 23 23 C 1.38000 * 119.83973 * 180.02562 * 9 8 6 24 24 H 1.09006 * 109.46486 * 299.99538 * 1 2 3 25 25 H 1.08997 * 109.47308 * 59.99848 * 1 2 3 26 26 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46995 * 240.00398 * 2 1 3 28 28 H 1.09002 * 109.47770 * 120.00129 * 2 1 3 29 29 H 1.08999 * 109.47233 * 205.67439 * 4 3 2 30 30 H 1.09000 * 109.47015 * 325.67447 * 4 3 2 31 31 H 1.08997 * 109.46739 * 85.67085 * 4 3 2 32 32 H 1.09001 * 117.48942 * 145.04311 * 5 3 2 33 33 H 1.08999 * 117.51661 * 0.02562 * 5 3 2 34 34 H 0.97004 * 119.99993 * 316.25536 * 8 6 5 35 35 H 1.07998 * 119.72566 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.88580 * 179.71652 * 11 10 9 37 37 H 0.97000 * 120.00833 * 0.02562 * 13 12 11 38 38 H 0.97000 * 119.99494 * 180.02562 * 13 12 11 39 39 H 0.97000 * 119.99868 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.11836 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1853 2.4446 0.7785 5 6 2.7425 1.9446 -1.2640 6 6 3.5550 1.6562 -0.0001 7 1 3.9428 2.5104 0.5549 8 7 4.4063 0.4639 -0.0007 9 6 5.7067 0.5329 0.5094 10 6 6.1899 1.7395 1.0187 11 6 7.4714 1.8242 1.5253 12 6 8.2942 0.7073 1.5337 13 7 9.5828 0.7939 2.0441 14 6 7.8138 -0.5210 1.0196 15 6 8.6394 -1.6643 1.0225 16 1 9.7137 -1.5549 1.0000 17 6 8.0669 -2.9403 1.0547 18 7 6.8111 -3.0858 1.3938 19 14 9.0947 -4.4365 0.6135 20 1 9.7450 -4.9687 1.8379 21 1 8.2201 -5.4814 0.0235 22 1 10.1363 -4.0487 -0.3714 23 6 6.5059 -0.5921 0.5067 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.3351 3.4442 0.3705 30 1 0.1340 2.1704 0.6913 31 1 1.4779 2.4331 1.8284 32 1 2.5954 2.9887 -1.5403 33 1 2.8410 1.2475 -2.0961 34 1 4.0680 -0.3734 -0.3549 35 1 5.5563 2.6141 1.0157 36 1 7.8359 2.7643 1.9125 37 1 9.9095 1.6366 2.3962 38 1 10.1562 0.0115 2.0485 39 1 6.4140 -3.9706 1.4158 40 1 6.1289 -1.5238 0.1114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397480853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:41 Heat of formation + Delta-G solvation = 23.301830 kcal Electronic energy + Delta-G solvation = -19201.725862 eV Core-core repulsion = 16401.518817 eV Total energy + Delta-G solvation = -2800.207044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24208 -39.19121 -36.02100 -35.31046 -33.34732 -32.05186 -31.30410 -29.01754 -27.70009 -26.56462 -24.74838 -23.56064 -22.39287 -21.36104 -19.56083 -18.88512 -17.80855 -17.33522 -16.81671 -16.54370 -16.34315 -15.56215 -15.07846 -14.66029 -14.32354 -14.14425 -14.07629 -13.82585 -13.69705 -13.26225 -13.18334 -12.87038 -12.75459 -12.64325 -12.53058 -12.35049 -12.08202 -11.93305 -11.79789 -11.67944 -11.14207 -10.92748 -10.85271 -10.46446 -9.25060 -9.10586 -8.50017 -7.27769 -6.00331 1.11991 1.40799 1.49152 1.53927 1.62977 2.27046 2.78879 2.89220 3.03983 3.75534 3.80897 3.92916 3.96465 4.10155 4.20218 4.44741 4.55034 4.62044 4.73690 4.79430 4.90051 4.97124 5.00165 5.08919 5.11892 5.19237 5.23183 5.30637 5.34662 5.36550 5.44619 5.56931 5.66019 5.90038 6.05932 6.15580 6.28950 6.56726 6.96745 7.06040 7.13010 7.22814 7.46880 7.67386 8.50894 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.005488 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.592432 B = 5100.427892 C = 6209.611285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.134 4.134 4 C -0.116 4.116 5 C -0.187 4.187 6 C 0.090 3.910 7 H 0.119 0.881 8 N -0.726 5.726 9 C 0.173 3.827 10 C -0.257 4.257 11 C -0.157 4.157 12 C 0.069 3.931 13 N -0.879 5.879 14 C 0.062 3.938 15 C -0.493 4.493 16 H 0.074 0.926 17 C 0.034 3.966 18 N -0.834 5.834 19 Si 0.974 3.026 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.225 4.225 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.388 0.612 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.391 0.609 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.785 6.328 -2.372 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.136 4.136 4 C -0.173 4.173 5 C -0.226 4.226 6 C -0.017 4.017 7 H 0.137 0.863 8 N -0.356 5.356 9 C 0.074 3.926 10 C -0.281 4.281 11 C -0.181 4.181 12 C -0.033 4.033 13 N -0.423 5.423 14 C 0.057 3.943 15 C -0.524 4.524 16 H 0.092 0.908 17 C -0.179 4.179 18 N -0.461 5.461 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.185 1.185 23 C -0.250 4.250 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.222 0.778 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.053 6.307 -2.316 11.274 hybrid contribution 0.725 -1.241 -0.126 1.443 sum -8.328 5.066 -2.442 10.049 Atomic orbital electron populations 1.21777 0.93806 1.01847 1.02526 1.20946 0.97278 0.93569 1.00744 1.22143 0.93734 0.96975 1.00785 1.21461 0.99773 0.97142 0.98904 1.23786 1.04406 1.02499 0.91937 1.21656 0.88156 0.90681 1.01231 0.86323 1.43791 1.11167 1.10656 1.69978 1.17602 0.84898 0.93964 0.96161 1.19980 0.97377 0.96050 1.14665 1.20066 0.94711 0.96279 1.07034 1.18041 0.88051 0.94644 1.02538 1.41678 1.12964 1.14071 1.73550 1.17340 0.93099 0.91601 0.92304 1.19386 0.94267 0.90956 1.47831 0.90751 1.26566 0.96160 1.03011 0.92173 1.69967 1.14726 1.25485 1.35956 0.85332 0.78772 0.77006 0.79272 1.19031 1.19912 1.18511 1.20429 0.96552 0.96373 1.11601 0.91491 0.91842 0.92595 0.92894 0.93491 0.91489 0.90032 0.92861 0.87052 0.89695 0.77845 0.87188 0.86969 0.78172 0.78216 0.91110 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.92 71.98 0.64 -2.13 16 2 C -0.09 -2.25 5.12 30.59 0.16 -2.09 16 3 C -0.13 -3.41 2.47 -52.16 -0.13 -3.54 16 4 C -0.12 -2.35 9.49 71.98 0.68 -1.66 16 5 C -0.19 -4.80 9.75 30.62 0.30 -4.50 16 6 C 0.09 2.88 6.01 44.99 0.27 3.15 16 7 H 0.12 3.82 5.88 -2.39 -0.01 3.80 16 8 N -0.73 -28.94 5.52 -318.98 -1.76 -30.70 16 9 C 0.17 8.32 6.64 38.13 0.25 8.57 16 10 C -0.26 -11.62 9.32 22.56 0.21 -11.41 16 11 C -0.16 -7.09 9.86 22.35 0.22 -6.87 16 12 C 0.07 3.39 6.79 38.96 0.26 3.66 16 13 N -0.88 -35.77 8.98 -50.31 -0.45 -36.22 16 14 C 0.06 3.39 5.57 -21.19 -0.12 3.27 16 15 C -0.49 -26.72 8.48 23.35 0.20 -26.52 16 16 H 0.07 3.81 6.71 -2.91 -0.02 3.79 16 17 C 0.03 1.74 5.16 85.23 0.44 2.18 16 18 N -0.83 -45.29 10.97 21.82 0.24 -45.05 16 19 Si 0.97 39.61 29.59 68.60 2.03 41.64 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 23 C -0.22 -12.23 8.49 22.81 0.19 -12.04 16 24 H 0.07 1.19 6.45 -2.38 -0.02 1.17 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.05 1.41 7.61 -2.38 -0.02 1.39 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.19 7.90 -2.39 -0.02 1.17 16 30 H 0.08 1.38 5.58 -2.39 -0.01 1.37 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 2.39 8.05 -2.39 -0.02 2.38 16 33 H 0.08 2.27 8.05 -2.39 -0.02 2.25 16 34 H 0.39 15.33 7.70 -92.70 -0.71 14.62 16 35 H 0.11 4.36 5.86 -2.91 -0.02 4.35 16 36 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.39 13.08 8.83 -92.71 -0.82 12.26 16 38 H 0.39 15.71 7.06 -92.71 -0.65 15.05 16 39 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 40 H 0.10 5.47 6.23 -2.91 -0.02 5.45 16 Total: -1.00 -61.15 319.29 2.53 -58.62 By element: Atomic # 1 Polarization: 62.75 SS G_CDS: -1.11 Total: 61.64 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 3.58 Total: -49.93 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -1.97 Total: -111.97 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -61.15 2.53 -58.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397480853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.922 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds