Wall clock time and date at job start Mon Mar 30 2020 07:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 C 1.52997 * 115.55875 * 34.31468 * 3 2 1 5 5 C 1.52997 * 117.50126 * 248.62308 * 3 2 1 6 6 C 1.52997 * 60.00025 * 252.51231 * 5 3 2 7 7 H 1.09003 * 117.50102 * 107.51247 * 6 5 3 8 8 N 1.46499 * 117.50075 * 252.51080 * 6 5 3 9 9 C 1.39853 * 120.00111 * 223.61098 * 8 6 5 10 10 C 1.39598 * 119.84040 * 359.97438 * 9 8 6 11 11 C 1.38058 * 120.54861 * 180.02562 * 10 9 8 12 12 C 1.38731 * 120.22086 * 359.97438 * 11 10 9 13 13 N 1.38868 * 120.16307 * 179.97438 * 12 11 10 14 14 C 1.41557 * 119.67539 * 0.02562 * 12 11 10 15 15 C 1.41030 * 120.26563 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00437 * 334.65510 * 15 14 12 17 17 C 1.39892 * 119.99562 * 154.66173 * 15 14 12 18 18 N 1.30892 * 119.99961 * 344.58133 * 17 15 14 19 19 Si 1.86803 * 119.99575 * 164.86641 * 17 15 14 20 20 H 1.48492 * 109.47409 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47156 * 119.99949 * 19 17 15 22 22 H 1.48503 * 109.46496 * 239.99462 * 19 17 15 23 23 C 1.38016 * 119.83797 * 180.28118 * 9 8 6 24 24 H 1.09002 * 109.47124 * 59.99612 * 1 2 3 25 25 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47225 * 299.99890 * 1 2 3 27 27 H 1.09007 * 109.46821 * 240.00508 * 2 1 3 28 28 H 1.08994 * 109.47447 * 120.00384 * 2 1 3 29 29 H 1.09001 * 109.47238 * 205.68532 * 4 3 2 30 30 H 1.08994 * 109.47433 * 325.68541 * 4 3 2 31 31 H 1.09005 * 109.47223 * 85.68678 * 4 3 2 32 32 H 1.08996 * 117.49831 * 145.02241 * 5 3 2 33 33 H 1.08993 * 117.49822 * 0.02562 * 5 3 2 34 34 H 0.97003 * 120.00030 * 43.60691 * 8 6 5 35 35 H 1.08003 * 119.72574 * 0.04774 * 10 9 8 36 36 H 1.08002 * 119.88367 * 180.02562 * 11 10 9 37 37 H 0.97000 * 120.00496 * 180.02562 * 13 12 11 38 38 H 0.97003 * 119.99597 * 0.03520 * 13 12 11 39 39 H 0.97010 * 120.00003 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.11599 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4449 0.7781 5 6 2.7419 1.9437 -1.2637 6 6 3.5550 1.6561 0.0000 7 1 4.1887 0.7692 -0.0002 8 7 4.0762 2.8048 0.7450 9 6 5.3879 2.7872 1.2297 10 6 6.1976 1.6730 1.0020 11 6 7.4945 1.6398 1.4742 12 6 8.0079 2.7171 2.1816 13 7 9.3124 2.6822 2.6565 14 6 7.1951 3.8518 2.4179 15 6 7.7041 4.9536 3.1360 16 1 8.5102 4.8131 3.8409 17 6 7.1646 6.2287 2.9354 18 7 6.4141 6.4646 1.8893 19 14 7.5220 7.5966 4.1563 20 1 8.3941 7.0774 5.2402 21 1 8.2087 8.7143 3.4605 22 1 6.2465 8.0854 4.7391 23 6 5.8736 3.8687 1.9362 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.3351 3.4443 0.3698 30 1 0.1339 2.1707 0.6909 31 1 1.4777 2.4338 1.8281 32 1 2.5947 2.9875 -1.5408 33 1 2.8399 1.2459 -2.0953 34 1 3.5114 3.5777 0.9022 35 1 5.8064 0.8302 0.4515 36 1 8.1117 0.7725 1.2915 37 1 9.6689 3.4366 3.1511 38 1 9.8672 1.9034 2.4934 39 1 6.0403 7.3489 1.7500 40 1 5.2428 4.7271 2.1143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397480854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:44 Heat of formation + Delta-G solvation = 38.867435 kcal Electronic energy + Delta-G solvation = -19146.087190 eV Core-core repulsion = 16346.555121 eV Total energy + Delta-G solvation = -2799.532069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.87463 -37.54848 -34.46883 -33.45491 -32.17827 -30.32658 -29.41134 -28.00895 -26.15164 -24.77473 -23.67684 -21.93891 -20.75447 -19.58768 -18.44876 -17.12854 -16.16117 -15.59282 -15.33030 -14.87050 -14.65349 -14.48906 -14.20965 -13.16302 -12.89140 -12.60353 -12.39216 -12.22293 -12.03925 -11.94702 -11.90570 -11.51702 -11.37011 -11.16276 -11.05959 -10.96783 -10.82403 -10.66219 -10.32523 -9.92942 -9.44365 -9.31933 -9.21341 -9.06565 -7.63499 -7.22396 -6.60881 -5.52572 -4.06486 2.89564 3.13883 3.18153 3.30671 3.42858 4.03435 4.13406 4.28727 4.81150 4.96161 5.00101 5.14887 5.29539 5.35301 5.42918 5.58570 5.64639 5.89607 5.91227 5.95525 6.01139 6.04639 6.13037 6.19750 6.28061 6.32994 6.37590 6.54562 6.66388 7.12040 7.15603 7.32780 7.47776 7.71669 7.87804 7.99666 8.12777 8.46086 8.74643 8.89575 8.93679 8.99919 9.26067 9.34034 10.37526 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.005087 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.492309 B = 5502.551654 C = 6413.858652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.151 4.151 4 C -0.118 4.118 5 C -0.203 4.203 6 C 0.126 3.874 7 H 0.122 0.878 8 N -0.726 5.726 9 C 0.176 3.824 10 C -0.254 4.254 11 C -0.152 4.152 12 C 0.085 3.915 13 N -0.889 5.889 14 C 0.095 3.905 15 C -0.463 4.463 16 H 0.071 0.929 17 C 0.076 3.924 18 N -0.801 5.801 19 Si 0.902 3.098 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.275 1.275 23 C -0.200 4.200 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.390 0.610 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.389 0.611 38 H 0.374 0.626 39 H 0.274 0.726 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 -6.841 -2.493 10.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.153 4.153 4 C -0.175 4.175 5 C -0.243 4.243 6 C 0.016 3.984 7 H 0.140 0.860 8 N -0.357 5.357 9 C 0.078 3.922 10 C -0.277 4.277 11 C -0.177 4.177 12 C -0.016 4.016 13 N -0.432 5.432 14 C 0.090 3.910 15 C -0.494 4.494 16 H 0.090 0.910 17 C -0.140 4.140 18 N -0.428 5.428 19 Si 0.727 3.273 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.200 1.200 23 C -0.224 4.224 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.224 0.776 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.217 0.783 38 H 0.199 0.801 39 H 0.085 0.915 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.639 -6.764 -2.678 10.549 hybrid contribution 0.233 1.033 0.449 1.150 sum -7.407 -5.731 -2.228 9.626 Atomic orbital electron populations 1.21817 0.96018 1.00965 1.01878 1.21002 0.95522 0.93818 1.01702 1.22047 0.95927 0.96076 1.01296 1.21343 0.98941 0.97318 0.99872 1.23755 1.06542 1.01668 0.92344 1.21423 0.90219 0.92428 0.94301 0.86018 1.43786 1.12261 1.17753 1.61902 1.17505 0.83288 0.94940 0.96439 1.19646 0.95459 0.98493 1.14150 1.19706 0.95740 0.97051 1.05164 1.17862 0.85635 0.96502 1.01556 1.41813 1.12538 1.21726 1.67075 1.16966 0.90325 0.90666 0.93084 1.19175 1.17226 0.91611 1.21373 0.91047 1.25752 0.93870 0.99722 0.94638 1.69885 1.26810 1.22697 1.23370 0.86378 0.78968 0.80624 0.81334 1.18716 1.20325 1.20034 1.20523 0.96174 0.97928 1.07761 0.92820 0.93204 0.92292 0.92068 0.91773 0.92864 0.91950 0.92167 0.89223 0.89228 0.77644 0.89554 0.89734 0.78339 0.80101 0.91519 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.92 37.16 0.33 -1.13 16 2 C -0.08 -0.95 6.12 -26.73 -0.16 -1.11 16 3 C -0.15 -2.03 2.47 -154.51 -0.38 -2.41 16 4 C -0.12 -1.52 8.49 37.16 0.32 -1.20 16 5 C -0.20 -2.87 9.75 -26.73 -0.26 -3.13 16 6 C 0.13 2.06 6.02 -67.93 -0.41 1.65 16 7 H 0.12 2.03 5.88 -51.93 -0.31 1.72 16 8 N -0.73 -14.29 5.52 -52.17 -0.29 -14.57 16 9 C 0.18 4.14 6.64 -83.77 -0.56 3.59 16 10 C -0.25 -5.80 9.32 -39.14 -0.36 -6.17 16 11 C -0.15 -3.51 9.86 -39.47 -0.39 -3.90 16 12 C 0.09 2.08 6.79 -83.23 -0.56 1.52 16 13 N -0.89 -18.30 8.98 32.75 0.29 -18.00 16 14 C 0.09 2.53 5.58 -106.66 -0.60 1.93 16 15 C -0.46 -12.20 8.51 -37.91 -0.32 -12.52 16 16 H 0.07 1.79 6.66 -52.49 -0.35 1.44 16 17 C 0.08 1.92 5.18 -17.33 -0.09 1.83 16 18 N -0.80 -21.03 10.89 55.55 0.60 -20.43 16 19 Si 0.90 19.00 29.59 -169.99 -5.03 13.97 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 C -0.20 -5.22 8.50 -38.75 -0.33 -5.55 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.57 6.45 -51.93 -0.33 0.24 16 27 H 0.06 0.66 7.90 -51.92 -0.41 0.25 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.69 7.61 -51.93 -0.40 0.30 16 30 H 0.06 0.69 5.58 -51.93 -0.29 0.40 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 33 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 34 H 0.39 7.44 7.70 -40.82 -0.31 7.13 16 35 H 0.09 1.78 5.86 -52.48 -0.31 1.47 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.39 7.84 7.04 -40.82 -0.29 7.56 16 38 H 0.37 6.51 8.83 -40.82 -0.36 6.15 16 39 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.12 3.23 6.15 -52.49 -0.32 2.91 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -27.89 319.12 -9.15 -37.04 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -5.76 Total: 23.78 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -3.78 Total: -26.59 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.61 Total: -53.01 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.89 -9.15 -37.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397480854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.906 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds