Wall clock time and date at job start Mon Mar 30 2020 07:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 C 1.52997 * 115.55875 * 34.31468 * 3 2 1 5 5 C 1.52997 * 117.50126 * 248.62308 * 3 2 1 6 6 C 1.52997 * 60.00025 * 252.51231 * 5 3 2 7 7 H 1.09003 * 117.50102 * 107.51247 * 6 5 3 8 8 N 1.46499 * 117.50075 * 252.51080 * 6 5 3 9 9 C 1.39853 * 120.00111 * 223.61098 * 8 6 5 10 10 C 1.39598 * 119.84040 * 359.97438 * 9 8 6 11 11 C 1.38058 * 120.54861 * 180.02562 * 10 9 8 12 12 C 1.38731 * 120.22086 * 359.97438 * 11 10 9 13 13 N 1.38868 * 120.16307 * 179.97438 * 12 11 10 14 14 C 1.41557 * 119.67539 * 0.02562 * 12 11 10 15 15 C 1.41030 * 120.26563 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00437 * 334.65510 * 15 14 12 17 17 C 1.39892 * 119.99562 * 154.66173 * 15 14 12 18 18 N 1.30892 * 119.99961 * 344.58133 * 17 15 14 19 19 Si 1.86803 * 119.99575 * 164.86641 * 17 15 14 20 20 H 1.48492 * 109.47409 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47156 * 119.99949 * 19 17 15 22 22 H 1.48503 * 109.46496 * 239.99462 * 19 17 15 23 23 C 1.38016 * 119.83797 * 180.28118 * 9 8 6 24 24 H 1.09002 * 109.47124 * 59.99612 * 1 2 3 25 25 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47225 * 299.99890 * 1 2 3 27 27 H 1.09007 * 109.46821 * 240.00508 * 2 1 3 28 28 H 1.08994 * 109.47447 * 120.00384 * 2 1 3 29 29 H 1.09001 * 109.47238 * 205.68532 * 4 3 2 30 30 H 1.08994 * 109.47433 * 325.68541 * 4 3 2 31 31 H 1.09005 * 109.47223 * 85.68678 * 4 3 2 32 32 H 1.08996 * 117.49831 * 145.02241 * 5 3 2 33 33 H 1.08993 * 117.49822 * 0.02562 * 5 3 2 34 34 H 0.97003 * 120.00030 * 43.60691 * 8 6 5 35 35 H 1.08003 * 119.72574 * 0.04774 * 10 9 8 36 36 H 1.08002 * 119.88367 * 180.02562 * 11 10 9 37 37 H 0.97000 * 120.00496 * 180.02562 * 13 12 11 38 38 H 0.97003 * 119.99597 * 0.03520 * 13 12 11 39 39 H 0.97010 * 120.00003 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.11599 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4449 0.7781 5 6 2.7419 1.9437 -1.2637 6 6 3.5550 1.6561 0.0000 7 1 4.1887 0.7692 -0.0002 8 7 4.0762 2.8048 0.7450 9 6 5.3879 2.7872 1.2297 10 6 6.1976 1.6730 1.0020 11 6 7.4945 1.6398 1.4742 12 6 8.0079 2.7171 2.1816 13 7 9.3124 2.6822 2.6565 14 6 7.1951 3.8518 2.4179 15 6 7.7041 4.9536 3.1360 16 1 8.5102 4.8131 3.8409 17 6 7.1646 6.2287 2.9354 18 7 6.4141 6.4646 1.8893 19 14 7.5220 7.5966 4.1563 20 1 8.3941 7.0774 5.2402 21 1 8.2087 8.7143 3.4605 22 1 6.2465 8.0854 4.7391 23 6 5.8736 3.8687 1.9362 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.3351 3.4443 0.3698 30 1 0.1339 2.1707 0.6909 31 1 1.4777 2.4338 1.8281 32 1 2.5947 2.9875 -1.5408 33 1 2.8399 1.2459 -2.0953 34 1 3.5114 3.5777 0.9022 35 1 5.8064 0.8302 0.4515 36 1 8.1117 0.7725 1.2915 37 1 9.6689 3.4366 3.1511 38 1 9.8672 1.9034 2.4934 39 1 6.0403 7.3489 1.7500 40 1 5.2428 4.7271 2.1143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397480854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:43 Heat of formation + Delta-G solvation = 23.313423 kcal Electronic energy + Delta-G solvation = -19146.761662 eV Core-core repulsion = 16346.555121 eV Total energy + Delta-G solvation = -2800.206542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23587 -39.19208 -36.05506 -35.32210 -33.44514 -31.74238 -31.30394 -29.08642 -27.92702 -26.59462 -24.59234 -23.54976 -22.39733 -21.28180 -19.60673 -18.92211 -17.82936 -17.30868 -16.88474 -16.44068 -16.21344 -15.66263 -15.33899 -14.56008 -14.32280 -14.18904 -14.00009 -13.78840 -13.52254 -13.27514 -13.04820 -12.93573 -12.89988 -12.70067 -12.57147 -12.35854 -12.02937 -11.94180 -11.75960 -11.63414 -11.14199 -10.95154 -10.85056 -10.46458 -9.24940 -9.11247 -8.49704 -7.27813 -6.00575 1.11147 1.40897 1.49982 1.54466 1.62803 2.26911 2.79256 2.86485 3.05518 3.76409 3.86133 3.90428 3.96192 4.10059 4.18991 4.46339 4.55634 4.62536 4.75649 4.80521 4.91154 4.95480 4.98346 5.04202 5.10731 5.22030 5.23247 5.33750 5.35335 5.38649 5.45152 5.57396 5.66048 5.90143 6.06426 6.16433 6.29039 6.56937 6.96614 7.06332 7.13190 7.23288 7.46998 7.67274 8.50729 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.005087 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.492309 B = 5502.551654 C = 6413.858652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.192 4.192 6 C 0.092 3.908 7 H 0.120 0.880 8 N -0.726 5.726 9 C 0.173 3.827 10 C -0.258 4.258 11 C -0.157 4.157 12 C 0.069 3.931 13 N -0.879 5.879 14 C 0.061 3.939 15 C -0.491 4.491 16 H 0.075 0.925 17 C 0.032 3.968 18 N -0.835 5.835 19 Si 0.975 3.025 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.226 4.226 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.388 0.612 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.390 0.610 38 H 0.391 0.609 39 H 0.279 0.721 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 -7.940 -2.841 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.133 4.133 4 C -0.176 4.176 5 C -0.231 4.231 6 C -0.016 4.016 7 H 0.137 0.863 8 N -0.356 5.356 9 C 0.074 3.926 10 C -0.281 4.281 11 C -0.181 4.181 12 C -0.033 4.033 13 N -0.423 5.423 14 C 0.055 3.945 15 C -0.522 4.522 16 H 0.093 0.907 17 C -0.180 4.180 18 N -0.462 5.462 19 Si 0.797 3.203 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.251 4.251 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.222 0.778 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.341 -7.901 -3.045 11.886 hybrid contribution 0.391 1.267 0.481 1.410 sum -7.950 -6.634 -2.564 10.667 Atomic orbital electron populations 1.21794 0.94468 1.02080 1.02056 1.21057 0.96841 0.92084 1.02110 1.22131 0.93513 0.97546 1.00107 1.21375 1.00270 0.97036 0.98906 1.23772 1.04973 1.01898 0.92470 1.21637 0.92243 0.91417 0.96312 0.86252 1.43793 1.10973 1.18849 1.61948 1.17613 0.84926 0.94404 0.95697 1.19980 0.95462 0.98843 1.13827 1.20062 0.96193 0.97525 1.04331 1.18035 0.86856 0.96337 1.02030 1.41683 1.11522 1.22501 1.66582 1.17354 0.91088 0.91952 0.94064 1.19436 1.18156 0.92456 1.22170 0.90726 1.26578 0.93454 1.01880 0.96080 1.69973 1.27840 1.23501 1.24931 0.85267 0.78812 0.77362 0.78839 1.18110 1.19688 1.19695 1.20486 0.96409 0.98382 1.09808 0.92390 0.91721 0.92331 0.91015 0.92087 0.93470 0.89664 0.93433 0.89896 0.87252 0.77796 0.87208 0.86978 0.78218 0.78172 0.91116 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.92 71.98 0.64 -1.77 16 2 C -0.08 -1.69 6.12 30.59 0.19 -1.50 16 3 C -0.13 -3.29 2.47 -52.18 -0.13 -3.42 16 4 C -0.12 -2.92 8.49 71.98 0.61 -2.31 16 5 C -0.19 -5.08 9.75 30.59 0.30 -4.78 16 6 C 0.09 2.92 6.02 44.99 0.27 3.19 16 7 H 0.12 3.82 5.88 -2.39 -0.01 3.81 16 8 N -0.73 -28.92 5.52 -318.97 -1.76 -30.68 16 9 C 0.17 8.31 6.64 38.14 0.25 8.56 16 10 C -0.26 -11.63 9.32 22.56 0.21 -11.42 16 11 C -0.16 -7.10 9.86 22.34 0.22 -6.87 16 12 C 0.07 3.40 6.79 38.96 0.26 3.66 16 13 N -0.88 -35.75 8.98 -50.31 -0.45 -36.20 16 14 C 0.06 3.33 5.58 -21.18 -0.12 3.21 16 15 C -0.49 -26.57 8.51 23.36 0.20 -26.37 16 16 H 0.07 3.82 6.66 -2.91 -0.02 3.80 16 17 C 0.03 1.68 5.18 85.23 0.44 2.12 16 18 N -0.83 -45.33 10.89 21.82 0.24 -45.09 16 19 Si 0.97 39.59 29.59 68.60 2.03 41.62 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 C -0.23 -12.30 8.50 22.81 0.19 -12.11 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.97 6.45 -2.39 -0.02 0.95 16 27 H 0.07 1.32 7.90 -2.38 -0.02 1.30 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.20 7.61 -2.39 -0.02 1.19 16 30 H 0.08 1.70 5.58 -2.39 -0.01 1.69 16 31 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.08 2.33 8.05 -2.39 -0.02 2.31 16 33 H 0.11 2.47 8.05 -2.39 -0.02 2.45 16 34 H 0.39 15.33 7.70 -92.71 -0.71 14.62 16 35 H 0.11 4.36 5.86 -2.91 -0.02 4.34 16 36 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.39 15.70 7.04 -92.71 -0.65 15.05 16 38 H 0.39 13.06 8.83 -92.71 -0.82 12.24 16 39 H 0.28 13.86 8.30 -92.70 -0.77 13.09 16 40 H 0.10 5.61 6.15 -2.91 -0.02 5.59 16 Total: -1.00 -61.03 319.12 2.49 -58.54 By element: Atomic # 1 Polarization: 62.73 SS G_CDS: -1.11 Total: 61.63 kcal Atomic # 6 Polarization: -53.35 SS G_CDS: 3.55 Total: -49.81 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -1.98 Total: -111.97 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -61.03 2.49 -58.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397480854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.851 kcal (2) G-P(sol) polarization free energy of solvation -61.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds