Wall clock time and date at job start Mon Mar 30 2020 07:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38225 * 120.42095 * 2 1 4 4 N 1.31860 * 120.76145 * 180.26897 * 3 2 1 5 5 C 1.31879 * 121.72422 * 359.73950 * 4 3 2 6 6 C 1.38182 * 120.76896 * 359.97438 * 5 4 3 7 7 C 1.38630 * 120.41471 * 179.73563 * 2 1 3 8 8 C 1.50699 * 120.79239 * 0.02562 * 7 2 1 9 9 C 1.53006 * 109.46866 * 84.72094 * 8 7 2 10 10 N 1.46902 * 109.46626 * 180.02562 * 9 8 7 11 11 C 1.47852 * 110.99904 * 290.83851 * 10 9 8 12 12 C 1.54906 * 104.79308 * 213.64049 * 11 10 9 13 13 C 1.55135 * 101.65564 * 37.07419 * 12 11 10 14 14 H 1.08999 * 110.71033 * 82.72697 * 13 12 11 15 15 C 1.50707 * 110.85451 * 205.89209 * 13 12 11 16 16 H 1.08004 * 119.99685 * 113.68596 * 15 13 12 17 17 C 1.37872 * 119.99898 * 293.68297 * 15 13 12 18 18 N 1.31509 * 120.00398 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99935 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46962 * 89.99929 * 19 17 15 21 21 H 1.48500 * 109.47465 * 210.00278 * 19 17 15 22 22 H 1.48500 * 109.47348 * 330.00743 * 19 17 15 23 23 C 1.47444 * 110.99494 * 170.00285 * 10 9 8 24 24 H 1.08997 * 109.46932 * 270.26763 * 1 2 3 25 25 H 1.09006 * 109.46917 * 30.26493 * 1 2 3 26 26 H 1.09002 * 109.47390 * 150.26593 * 1 2 3 27 27 H 1.07996 * 119.61694 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.61447 * 179.97438 * 5 4 3 29 29 H 1.08002 * 120.42217 * 179.97438 * 6 5 4 30 30 H 1.08993 * 109.47512 * 324.72216 * 8 7 2 31 31 H 1.09000 * 109.47247 * 204.71925 * 8 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 9 8 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 9 8 7 34 34 H 1.08993 * 110.37464 * 332.47073 * 11 10 9 35 35 H 1.08996 * 110.36894 * 94.81323 * 11 10 9 36 36 H 1.09001 * 110.99210 * 278.97925 * 12 11 10 37 37 H 1.08999 * 111.02098 * 155.18329 * 12 11 10 38 38 H 0.97000 * 120.00774 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.88568 * 242.66219 * 23 10 9 40 40 H 1.08998 * 109.89091 * 3.68515 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1998 -0.0053 5 6 4.2256 0.0822 -0.0057 6 6 3.5947 -1.1472 0.0000 7 6 2.2088 -1.1955 0.0055 8 6 1.4830 -2.5162 0.0110 9 6 1.1216 -2.9055 -1.4239 10 7 0.4135 -4.1925 -1.4184 11 6 1.3230 -5.2960 -1.0427 12 6 0.8235 -6.5151 -1.8575 13 6 0.4093 -5.8490 -3.1960 14 1 1.2762 -5.7106 -3.8421 15 6 -0.6494 -6.6624 -3.8950 16 1 -1.6450 -6.2619 -4.0173 17 6 -0.3472 -7.9178 -4.3782 18 7 0.8649 -8.4057 -4.2288 19 14 -1.6597 -8.9263 -5.2440 20 1 -1.6312 -8.6311 -6.6991 21 1 -1.3970 -10.3717 -5.0268 22 1 -2.9945 -8.5778 -4.6944 23 6 -0.1582 -4.4866 -2.7453 24 1 -0.3633 0.0048 1.0276 25 1 -0.3633 0.8877 -0.5180 26 1 -0.3634 -0.8924 -0.5097 27 1 1.6675 2.1276 0.0004 28 1 5.3046 0.1284 -0.0106 29 1 4.1736 -2.0590 -0.0007 30 1 0.5726 -2.4280 0.6038 31 1 2.1259 -3.2823 0.4444 32 1 0.4787 -2.1393 -1.8572 33 1 2.0321 -2.9937 -2.0166 34 1 2.3494 -5.0516 -1.3161 35 1 1.2521 -5.4990 0.0259 36 1 -0.0330 -6.9840 -1.3732 37 1 1.6254 -7.2370 -2.0123 38 1 1.0777 -9.2888 -4.5691 39 1 -1.2447 -4.5418 -2.6768 40 1 0.1295 -3.7097 -3.4535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397631722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:02 Heat of formation + Delta-G solvation = 21.017450 kcal Electronic energy + Delta-G solvation = -19025.957363 eV Core-core repulsion = 16225.651260 eV Total energy + Delta-G solvation = -2800.306102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44658 -38.20425 -35.09255 -33.15844 -32.46152 -30.86424 -28.33056 -28.22396 -27.17338 -24.52408 -23.29988 -22.46703 -21.19517 -19.84041 -19.53771 -16.82568 -16.63255 -16.39193 -15.32160 -15.13963 -14.60910 -14.35850 -14.18576 -14.03272 -13.46811 -12.87667 -12.82772 -12.52395 -12.51388 -12.30952 -12.10137 -11.77404 -11.54775 -11.10046 -11.03703 -10.72047 -10.70821 -10.54804 -10.24537 -9.67170 -9.53099 -9.51174 -9.26183 -8.98035 -8.89280 -8.41596 -7.66558 -6.04795 -4.07449 1.02753 1.17426 3.29137 3.36049 3.39481 3.68670 4.34577 4.39071 4.44219 4.64561 4.83098 4.90026 4.95312 5.21768 5.29062 5.32770 5.40537 5.49473 5.51495 5.62231 5.78730 5.80422 5.81982 5.93931 6.06897 6.10655 6.19312 6.24714 6.31372 6.41072 6.54382 6.65765 6.83918 7.11537 7.15329 7.54296 7.58434 7.75583 7.86655 7.87977 7.96520 8.38833 8.94420 9.56758 11.05343 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042912 B = 0.003687 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.341091 B = 7593.224470 C = 7874.840652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.133 4.133 3 C 0.095 3.905 4 N -0.490 5.490 5 C 0.089 3.911 6 C -0.166 4.166 7 C -0.033 4.033 8 C -0.080 4.080 9 C 0.060 3.940 10 N -0.533 5.533 11 C 0.036 3.964 12 C -0.105 4.105 13 C 0.034 3.966 14 H 0.029 0.971 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.048 3.952 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 14.225 9.252 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.135 4.135 3 C -0.062 4.062 4 N -0.199 5.199 5 C -0.067 4.067 6 C -0.186 4.186 7 C -0.041 4.041 8 C -0.117 4.117 9 C -0.069 4.069 10 N -0.257 5.257 11 C -0.091 4.091 12 C -0.144 4.144 13 C 0.015 3.985 14 H 0.048 0.952 15 C -0.549 4.549 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.079 4.079 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.169 0.831 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.132 14.912 9.569 17.992 hybrid contribution -0.268 -1.483 -1.104 1.868 sum 2.864 13.429 8.465 16.131 Atomic orbital electron populations 1.20822 0.90130 1.03687 1.02703 1.20855 0.97737 0.93549 1.01391 1.22631 0.89951 0.97337 0.96305 1.67639 1.08367 1.31485 1.12410 1.22683 1.00211 0.87733 0.96096 1.22106 0.94728 0.99711 1.02086 1.20316 0.93644 0.95501 0.94651 1.20649 1.00377 0.92081 0.98620 1.22175 0.97103 0.93220 0.94408 1.63616 1.31962 1.01003 1.29103 1.23161 0.93699 0.92873 0.99405 1.22633 1.00257 0.95052 0.96438 1.19808 0.96117 0.89633 0.92935 0.95239 1.21074 0.96703 1.00637 1.36506 0.92438 1.24979 0.95347 0.97740 0.95866 1.69953 1.19060 1.17637 1.46264 0.86603 0.82173 0.79381 0.79908 1.20736 1.21263 1.19828 1.22996 0.99798 0.98524 0.86608 0.90901 0.91320 0.90239 0.83065 0.82987 0.84847 0.89622 0.90614 0.91313 0.95084 0.94985 0.92079 0.92447 0.91284 0.93040 0.91191 0.94928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.30 36.01 0.33 -0.73 16 2 C -0.13 -1.48 5.90 -104.48 -0.62 -2.10 16 3 C 0.09 1.06 10.86 -17.54 -0.19 0.87 16 4 N -0.49 -6.14 10.36 -13.25 -0.14 -6.28 16 5 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 6 C -0.17 -1.88 9.80 -39.44 -0.39 -2.26 16 7 C -0.03 -0.39 5.17 -104.32 -0.54 -0.93 16 8 C -0.08 -0.99 4.73 -27.88 -0.13 -1.13 16 9 C 0.06 0.90 4.38 -3.82 -0.02 0.88 16 10 N -0.53 -9.69 5.16 -231.24 -1.19 -10.89 16 11 C 0.04 0.67 5.78 -2.29 -0.01 0.66 16 12 C -0.11 -2.41 5.95 -24.60 -0.15 -2.56 16 13 C 0.03 0.85 2.77 -89.95 -0.25 0.60 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 15 C -0.51 -13.87 8.48 -34.44 -0.29 -14.16 16 16 H 0.06 1.54 7.53 -52.48 -0.40 1.14 16 17 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 18 N -0.89 -25.38 12.49 55.43 0.69 -24.69 16 19 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.05 0.99 6.45 -2.83 -0.02 0.98 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 26 H 0.08 0.81 5.60 -51.93 -0.29 0.52 16 27 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.09 1.04 7.12 -51.93 -0.37 0.67 16 31 H 0.08 0.94 7.42 -51.93 -0.39 0.56 16 32 H 0.07 1.00 6.83 -51.93 -0.35 0.64 16 33 H 0.03 0.50 7.85 -51.93 -0.41 0.09 16 34 H 0.03 0.58 7.62 -51.93 -0.40 0.18 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 37 H 0.07 1.69 7.76 -51.93 -0.40 1.29 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 39 H 0.07 1.50 7.64 -51.93 -0.40 1.10 16 40 H 0.03 0.64 7.55 -51.93 -0.39 0.25 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -29.20 320.96 -9.68 -38.88 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.30 Total: -0.51 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.56 Total: -17.45 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.64 Total: -41.85 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.20 -9.68 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.902 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds