Wall clock time and date at job start Mon Mar 30 2020 07:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38225 * 120.42095 * 2 1 4 4 N 1.31860 * 120.76145 * 180.26897 * 3 2 1 5 5 C 1.31879 * 121.72422 * 359.73950 * 4 3 2 6 6 C 1.38182 * 120.76896 * 359.97438 * 5 4 3 7 7 C 1.38630 * 120.41471 * 179.73563 * 2 1 3 8 8 C 1.50699 * 120.79239 * 0.02562 * 7 2 1 9 9 C 1.53006 * 109.46866 * 84.72094 * 8 7 2 10 10 N 1.46902 * 109.46626 * 180.02562 * 9 8 7 11 11 C 1.47852 * 110.99904 * 290.83851 * 10 9 8 12 12 C 1.54906 * 104.79308 * 213.64049 * 11 10 9 13 13 C 1.55135 * 101.65564 * 37.07419 * 12 11 10 14 14 H 1.08999 * 110.71033 * 82.72697 * 13 12 11 15 15 C 1.50707 * 110.85451 * 205.89209 * 13 12 11 16 16 H 1.08004 * 119.99685 * 113.68596 * 15 13 12 17 17 C 1.37872 * 119.99898 * 293.68297 * 15 13 12 18 18 N 1.31509 * 120.00398 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99935 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46962 * 89.99929 * 19 17 15 21 21 H 1.48500 * 109.47465 * 210.00278 * 19 17 15 22 22 H 1.48500 * 109.47348 * 330.00743 * 19 17 15 23 23 C 1.47444 * 110.99494 * 170.00285 * 10 9 8 24 24 H 1.08997 * 109.46932 * 270.26763 * 1 2 3 25 25 H 1.09006 * 109.46917 * 30.26493 * 1 2 3 26 26 H 1.09002 * 109.47390 * 150.26593 * 1 2 3 27 27 H 1.07996 * 119.61694 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.61447 * 179.97438 * 5 4 3 29 29 H 1.08002 * 120.42217 * 179.97438 * 6 5 4 30 30 H 1.08993 * 109.47512 * 324.72216 * 8 7 2 31 31 H 1.09000 * 109.47247 * 204.71925 * 8 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 9 8 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 9 8 7 34 34 H 1.08993 * 110.37464 * 332.47073 * 11 10 9 35 35 H 1.08996 * 110.36894 * 94.81323 * 11 10 9 36 36 H 1.09001 * 110.99210 * 278.97925 * 12 11 10 37 37 H 1.08999 * 111.02098 * 155.18329 * 12 11 10 38 38 H 0.97000 * 120.00774 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.88568 * 242.66219 * 23 10 9 40 40 H 1.08998 * 109.89091 * 3.68515 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1998 -0.0053 5 6 4.2256 0.0822 -0.0057 6 6 3.5947 -1.1472 0.0000 7 6 2.2088 -1.1955 0.0055 8 6 1.4830 -2.5162 0.0110 9 6 1.1216 -2.9055 -1.4239 10 7 0.4135 -4.1925 -1.4184 11 6 1.3230 -5.2960 -1.0427 12 6 0.8235 -6.5151 -1.8575 13 6 0.4093 -5.8490 -3.1960 14 1 1.2762 -5.7106 -3.8421 15 6 -0.6494 -6.6624 -3.8950 16 1 -1.6450 -6.2619 -4.0173 17 6 -0.3472 -7.9178 -4.3782 18 7 0.8649 -8.4057 -4.2288 19 14 -1.6597 -8.9263 -5.2440 20 1 -1.6312 -8.6311 -6.6991 21 1 -1.3970 -10.3717 -5.0268 22 1 -2.9945 -8.5778 -4.6944 23 6 -0.1582 -4.4866 -2.7453 24 1 -0.3633 0.0048 1.0276 25 1 -0.3633 0.8877 -0.5180 26 1 -0.3634 -0.8924 -0.5097 27 1 1.6675 2.1276 0.0004 28 1 5.3046 0.1284 -0.0106 29 1 4.1736 -2.0590 -0.0007 30 1 0.5726 -2.4280 0.6038 31 1 2.1259 -3.2823 0.4444 32 1 0.4787 -2.1393 -1.8572 33 1 2.0321 -2.9937 -2.0166 34 1 2.3494 -5.0516 -1.3161 35 1 1.2521 -5.4990 0.0259 36 1 -0.0330 -6.9840 -1.3732 37 1 1.6254 -7.2370 -2.0123 38 1 1.0777 -9.2888 -4.5691 39 1 -1.2447 -4.5418 -2.6768 40 1 0.1295 -3.7097 -3.4535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397631722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:01 Heat of formation + Delta-G solvation = 4.085950 kcal Electronic energy + Delta-G solvation = -19026.691568 eV Core-core repulsion = 16225.651260 eV Total energy + Delta-G solvation = -2801.040307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30822 -39.76388 -36.24977 -34.83614 -33.46448 -32.33871 -30.03049 -29.52975 -28.03775 -26.33911 -24.56758 -23.39355 -22.24569 -21.42985 -21.25634 -18.59339 -17.66715 -17.42977 -16.82470 -16.42511 -15.97664 -15.82459 -15.38960 -15.13608 -14.45204 -14.24993 -14.12575 -13.83753 -13.57145 -13.56023 -13.31920 -13.09594 -12.95643 -12.68581 -12.56255 -12.44575 -12.37075 -12.00160 -11.77951 -11.50135 -11.21178 -10.92043 -10.50288 -10.37957 -10.36055 -9.79143 -9.18860 -8.14958 -6.24510 0.20926 0.29574 1.41434 1.42395 1.52794 2.42616 2.82479 3.11942 3.16832 3.60527 3.80227 3.85325 4.03166 4.07390 4.14626 4.16708 4.27024 4.42783 4.53696 4.55106 4.57476 4.61225 4.78097 4.82216 4.85599 4.89836 4.96438 5.00740 5.11607 5.17351 5.26130 5.33713 5.35776 5.51360 5.57524 5.71491 5.83685 5.87046 6.13390 6.27412 6.34610 6.84413 7.04643 7.43160 8.94681 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042912 B = 0.003687 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.341091 B = 7593.224470 C = 7874.840652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.136 4.136 3 C 0.086 3.914 4 N -0.512 5.512 5 C 0.080 3.920 6 C -0.172 4.172 7 C -0.048 4.048 8 C -0.067 4.067 9 C 0.063 3.937 10 N -0.529 5.529 11 C 0.049 3.951 12 C -0.099 4.099 13 C 0.024 3.976 14 H -0.004 1.004 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.956 3.044 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.266 1.266 23 C 0.059 3.941 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.146 0.854 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.021 0.979 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.357 15.293 10.030 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.138 4.138 3 C -0.071 4.071 4 N -0.221 5.221 5 C -0.076 4.076 6 C -0.192 4.192 7 C -0.056 4.056 8 C -0.104 4.104 9 C -0.066 4.066 10 N -0.253 5.253 11 C -0.078 4.078 12 C -0.138 4.138 13 C 0.005 3.995 14 H 0.015 0.985 15 C -0.568 4.568 16 H 0.075 0.925 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.781 3.219 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.190 1.190 23 C -0.068 4.068 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.191 0.809 28 H 0.191 0.809 29 H 0.163 0.837 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.506 15.995 10.355 19.219 hybrid contribution -0.039 -1.769 -1.354 2.228 sum 2.468 14.226 9.001 17.014 Atomic orbital electron populations 1.20843 0.88782 1.03925 1.03538 1.21080 0.98761 0.93266 1.00674 1.23029 0.89788 0.98364 0.95886 1.67673 1.09177 1.32212 1.13051 1.23062 1.01340 0.87460 0.95742 1.22305 0.94770 1.00351 1.01732 1.20355 0.94035 0.95429 0.95784 1.20486 1.00770 0.92550 0.96623 1.22219 0.96431 0.91594 0.96337 1.63631 1.32443 1.02122 1.27135 1.23055 0.93841 0.90917 1.00016 1.22423 0.98908 0.96155 0.96337 1.19792 0.94631 0.91947 0.93130 0.98533 1.21443 0.97222 1.01265 1.36846 0.92534 1.25769 0.97358 0.98894 0.96631 1.70076 1.20787 1.17956 1.47173 0.85587 0.79750 0.77703 0.78825 1.20189 1.20977 1.19048 1.22756 0.99420 0.96526 0.88136 0.89719 0.89771 0.91261 0.80916 0.80913 0.83652 0.89007 0.90413 0.90581 0.96038 0.94322 0.89584 0.93871 0.93701 0.93049 0.91701 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.30 71.24 0.66 -1.14 16 2 C -0.14 -2.74 5.90 -19.77 -0.12 -2.85 16 3 C 0.09 1.75 10.86 84.69 0.92 2.67 16 4 N -0.51 -12.02 10.36 -195.85 -2.03 -14.05 16 5 C 0.08 1.66 11.18 84.67 0.95 2.61 16 6 C -0.17 -3.58 9.80 22.36 0.22 -3.36 16 7 C -0.05 -1.04 5.17 -19.67 -0.10 -1.14 16 8 C -0.07 -1.52 4.73 29.85 0.14 -1.38 16 9 C 0.06 1.78 4.38 86.31 0.38 2.16 16 10 N -0.53 -18.53 5.16 -885.51 -4.57 -23.10 16 11 C 0.05 1.78 5.78 86.77 0.50 2.28 16 12 C -0.10 -4.63 5.95 31.98 0.19 -4.44 16 13 C 0.02 1.22 2.77 -10.36 -0.03 1.20 16 14 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 15 C -0.53 -29.17 8.48 25.60 0.22 -28.96 16 16 H 0.06 3.05 7.53 -2.91 -0.02 3.02 16 17 C 0.01 0.68 5.36 84.65 0.45 1.14 16 18 N -0.92 -53.53 12.49 21.44 0.27 -53.26 16 19 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 C 0.06 2.45 6.45 86.65 0.56 3.01 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.06 8.10 -2.38 -0.02 1.04 16 26 H 0.07 1.25 5.60 -2.39 -0.01 1.24 16 27 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.09 2.00 7.12 -2.39 -0.02 1.98 16 31 H 0.08 1.75 7.42 -2.39 -0.02 1.73 16 32 H 0.08 2.07 6.83 -2.39 -0.02 2.05 16 33 H 0.02 0.66 7.85 -2.39 -0.02 0.64 16 34 H 0.04 1.35 7.62 -2.39 -0.02 1.34 16 35 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.04 2.09 8.05 -2.39 -0.02 2.07 16 37 H 0.04 2.26 7.76 -2.39 -0.02 2.24 16 38 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.06 2.75 7.64 -2.38 -0.02 2.73 16 40 H 0.04 1.57 7.55 -2.39 -0.02 1.55 16 Total: -1.00 -62.69 320.96 1.64 -61.05 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.01 Total: 12.05 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 4.94 Total: -28.22 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -6.33 Total: -90.40 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -62.69 1.64 -61.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.137 kcal (2) G-P(sol) polarization free energy of solvation -62.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds