Wall clock time and date at job start Mon Mar 30 2020 07:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42072 * 2 1 4 4 N 1.31852 * 120.76649 * 180.02562 * 3 2 1 5 5 C 1.31891 * 121.72241 * 359.97438 * 4 3 2 6 6 C 1.38181 * 120.76549 * 359.74408 * 5 4 3 7 7 C 1.38624 * 120.41502 * 179.97438 * 2 1 3 8 8 C 1.50690 * 120.79360 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.47283 * 85.00084 * 8 7 2 10 10 N 1.46907 * 109.47073 * 174.95918 * 9 8 7 11 11 C 1.48558 * 110.99752 * 174.56630 * 10 9 8 12 12 C 1.54381 * 104.59431 * 200.96130 * 11 10 9 13 13 C 1.54255 * 105.06054 * 23.85367 * 12 11 10 14 14 H 1.09003 * 110.32054 * 241.00492 * 13 12 11 15 15 C 1.50695 * 110.32614 * 118.89668 * 13 12 11 16 16 H 1.08001 * 120.00220 * 241.45688 * 15 13 12 17 17 C 1.37882 * 119.99845 * 61.45384 * 15 13 12 18 18 N 1.31509 * 119.99913 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99875 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46892 * 269.99849 * 19 17 15 21 21 H 1.48498 * 109.47066 * 150.00072 * 19 17 15 22 22 H 1.48499 * 109.47048 * 29.99873 * 19 17 15 23 23 C 1.48561 * 110.99918 * 59.14853 * 10 9 8 24 24 H 1.09007 * 109.46728 * 270.02120 * 1 2 3 25 25 H 1.09001 * 109.47454 * 30.01110 * 1 2 3 26 26 H 1.08990 * 109.47568 * 150.01927 * 1 2 3 27 27 H 1.08006 * 119.61676 * 359.97438 * 3 2 1 28 28 H 1.07994 * 119.61394 * 180.02562 * 5 4 3 29 29 H 1.07993 * 120.41874 * 180.26207 * 6 5 4 30 30 H 1.08999 * 109.47118 * 324.99982 * 8 7 2 31 31 H 1.08998 * 109.47440 * 204.99898 * 8 7 2 32 32 H 1.09001 * 109.47330 * 54.96154 * 9 8 7 33 33 H 1.08993 * 109.46992 * 294.95788 * 9 8 7 34 34 H 1.09002 * 110.41003 * 82.18029 * 11 10 9 35 35 H 1.08999 * 110.41533 * 319.74116 * 11 10 9 36 36 H 1.08997 * 110.32000 * 264.95708 * 12 11 10 37 37 H 1.08999 * 110.40816 * 142.79788 * 12 11 10 38 38 H 0.96994 * 120.00457 * 359.97438 * 18 17 15 39 39 H 1.08998 * 110.41191 * 40.26010 * 23 10 9 40 40 H 1.08994 * 110.40807 * 277.81651 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0822 -0.0005 6 6 3.5948 -1.1471 0.0053 7 6 2.2088 -1.1955 0.0005 8 6 1.4831 -2.5161 0.0017 9 6 1.1267 -2.9035 -1.4349 10 7 0.5277 -4.2449 -1.4461 11 6 0.0494 -4.6029 -2.8063 12 6 -0.9902 -5.7198 -2.5715 13 6 -1.4809 -5.5128 -1.1238 14 1 -1.2570 -6.3915 -0.5189 15 6 -2.9612 -5.2310 -1.1081 16 1 -3.3281 -4.2921 -0.7203 17 6 -3.8472 -6.1717 -1.5889 18 7 -3.4004 -7.3151 -2.0607 19 14 -5.6821 -5.8221 -1.5701 20 1 -6.2627 -6.2938 -0.2872 21 1 -6.3331 -6.5337 -2.6993 22 1 -5.9091 -4.3612 -1.7088 23 6 -0.6965 -4.2883 -0.6056 24 1 -0.3633 0.0004 1.0278 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3634 -0.8900 -0.5135 27 1 1.6675 2.1277 -0.0004 28 1 5.3046 0.1285 -0.0005 29 1 4.1737 -2.0588 0.0095 30 1 0.5706 -2.4287 0.5914 31 1 2.1244 -3.2828 0.4363 32 1 2.0294 -2.9036 -2.0458 33 1 0.4145 -2.1842 -1.8391 34 1 0.8749 -4.9735 -3.4141 35 1 -0.4186 -3.7421 -3.2836 36 1 -0.5238 -6.6993 -2.6768 37 1 -1.8204 -5.6194 -3.2707 38 1 -2.4476 -7.4965 -2.0708 39 1 -1.2813 -3.3781 -0.7384 40 1 -0.4327 -4.4220 0.4435 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397631723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:04 Heat of formation + Delta-G solvation = 18.325530 kcal Electronic energy + Delta-G solvation = -19231.780087 eV Core-core repulsion = 16431.357254 eV Total energy + Delta-G solvation = -2800.422833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48253 -38.36585 -35.22116 -33.44420 -32.53677 -30.79649 -28.50846 -27.93412 -27.05415 -24.48703 -23.38016 -22.45505 -21.25353 -20.22784 -19.44586 -17.01037 -16.81873 -16.46944 -15.36942 -15.12494 -14.83497 -14.30601 -14.04788 -13.79506 -13.49203 -13.46096 -12.89012 -12.83737 -12.49344 -12.34530 -11.93915 -11.77958 -11.58422 -11.23415 -10.99203 -10.87057 -10.54198 -10.43385 -10.14412 -9.92437 -9.54584 -9.52077 -9.47818 -9.00538 -8.49601 -8.34708 -7.97271 -6.36167 -4.08850 1.00188 1.14312 3.41068 3.43806 3.59498 3.65909 4.31084 4.36017 4.51139 4.61857 4.79868 4.86719 4.89937 5.16893 5.25933 5.31738 5.36692 5.47473 5.50751 5.61693 5.62085 5.75184 5.83127 5.86620 5.92025 6.00275 6.08701 6.18134 6.24496 6.35320 6.35909 6.61720 6.67325 6.85477 6.90665 7.26481 7.39373 7.53369 7.65621 7.85211 8.23819 8.40207 8.86551 9.63722 11.02741 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033643 B = 0.004183 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.063381 B = 6692.068729 C = 7257.283498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 C 0.095 3.905 4 N -0.490 5.490 5 C 0.088 3.912 6 C -0.165 4.165 7 C -0.033 4.033 8 C -0.083 4.083 9 C 0.054 3.946 10 N -0.517 5.517 11 C 0.038 3.962 12 C -0.113 4.113 13 C 0.032 3.968 14 H 0.024 0.976 15 C -0.596 4.596 16 H 0.048 0.952 17 C 0.020 3.980 18 N -0.911 5.911 19 Si 1.068 2.932 20 H -0.288 1.288 21 H -0.284 1.284 22 H -0.290 1.290 23 C 0.047 3.953 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.274 0.726 39 H 0.037 0.963 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.940 12.722 2.889 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.134 4.134 3 C -0.062 4.062 4 N -0.198 5.198 5 C -0.068 4.068 6 C -0.185 4.185 7 C -0.041 4.041 8 C -0.120 4.120 9 C -0.075 4.075 10 N -0.241 5.241 11 C -0.090 4.090 12 C -0.152 4.152 13 C 0.013 3.987 14 H 0.042 0.958 15 C -0.635 4.635 16 H 0.066 0.934 17 C -0.185 4.185 18 N -0.547 5.547 19 Si 0.897 3.103 20 H -0.215 1.215 21 H -0.210 1.210 22 H -0.216 1.216 23 C -0.080 4.080 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.153 0.847 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.330 12.517 2.681 16.450 hybrid contribution 0.562 0.477 0.101 0.744 sum 10.892 12.995 2.782 17.183 Atomic orbital electron populations 1.20831 0.90137 1.03609 1.02872 1.20870 0.97708 0.93622 1.01198 1.22633 0.89931 0.97340 0.96250 1.67643 1.08336 1.31493 1.12368 1.22688 1.00192 0.87743 0.96214 1.22094 0.94610 0.99711 1.02101 1.20281 0.93685 0.95338 0.94799 1.20674 1.00684 0.92465 0.98197 1.22148 0.99327 0.90836 0.95199 1.65447 1.26654 1.23183 1.08798 1.23072 0.97466 0.98473 0.89990 1.22512 0.96269 0.95401 1.01014 1.19534 0.94928 0.92812 0.91430 0.95784 1.22030 0.90816 1.04741 1.45896 0.93388 1.25757 1.05985 0.93216 0.93522 1.70737 1.17779 1.23461 1.42758 0.83549 0.74765 0.75167 0.76815 1.21460 1.21020 1.21605 1.23175 0.88752 0.99722 0.96386 0.90708 0.91177 0.90629 0.83013 0.82975 0.84730 0.90103 0.89729 0.91366 0.94857 0.91806 0.94766 0.93694 0.91289 0.91489 0.94491 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.30 36.01 0.33 -0.90 16 2 C -0.13 -1.54 5.90 -104.48 -0.62 -2.16 16 3 C 0.10 1.09 10.86 -17.55 -0.19 0.90 16 4 N -0.49 -6.10 10.36 -13.25 -0.14 -6.24 16 5 C 0.09 0.96 11.18 -17.55 -0.20 0.76 16 6 C -0.17 -1.80 9.80 -39.44 -0.39 -2.19 16 7 C -0.03 -0.39 5.17 -104.32 -0.54 -0.93 16 8 C -0.08 -1.07 4.39 -27.89 -0.12 -1.20 16 9 C 0.05 0.80 4.79 -3.82 -0.02 0.78 16 10 N -0.52 -9.42 5.45 -229.97 -1.25 -10.67 16 11 C 0.04 0.72 6.49 -2.18 -0.01 0.71 16 12 C -0.11 -2.59 5.03 -25.35 -0.13 -2.72 16 13 C 0.03 0.79 2.65 -90.39 -0.24 0.55 16 14 H 0.02 0.64 8.04 -51.93 -0.42 0.22 16 15 C -0.60 -16.26 8.37 -34.44 -0.29 -16.55 16 16 H 0.05 1.30 7.58 -52.49 -0.40 0.91 16 17 C 0.02 0.55 5.09 -17.82 -0.09 0.46 16 18 N -0.91 -26.84 13.27 55.43 0.74 -26.10 16 19 Si 1.07 24.70 29.90 -169.99 -5.08 19.62 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.05 0.96 4.86 -2.18 -0.01 0.95 16 24 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 25 H 0.07 0.63 8.09 -51.93 -0.42 0.20 16 26 H 0.07 0.91 5.58 -51.93 -0.29 0.62 16 27 H 0.15 1.37 8.06 -52.48 -0.42 0.94 16 28 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.08 1.09 6.16 -51.93 -0.32 0.77 16 31 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.51 6.72 -51.93 -0.35 0.16 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.64 7.89 -51.93 -0.41 0.24 16 36 H 0.04 1.02 7.92 -51.93 -0.41 0.60 16 37 H 0.07 1.73 7.23 -51.93 -0.38 1.36 16 38 H 0.27 7.98 6.00 -40.82 -0.25 7.74 16 39 H 0.04 0.77 7.54 -51.93 -0.39 0.38 16 40 H 0.06 1.19 7.78 -51.93 -0.40 0.79 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -30.00 317.41 -9.65 -39.64 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.18 Total: 0.51 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.51 Total: -21.53 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.66 Total: -43.02 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.00 -9.65 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.966 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds