Wall clock time and date at job start Mon Mar 30 2020 07:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42072 * 2 1 4 4 N 1.31852 * 120.76649 * 180.02562 * 3 2 1 5 5 C 1.31891 * 121.72241 * 359.97438 * 4 3 2 6 6 C 1.38181 * 120.76549 * 359.74408 * 5 4 3 7 7 C 1.38624 * 120.41502 * 179.97438 * 2 1 3 8 8 C 1.50690 * 120.79360 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.47283 * 85.00084 * 8 7 2 10 10 N 1.46907 * 109.47073 * 174.95918 * 9 8 7 11 11 C 1.48558 * 110.99752 * 174.56630 * 10 9 8 12 12 C 1.54381 * 104.59431 * 200.96130 * 11 10 9 13 13 C 1.54255 * 105.06054 * 23.85367 * 12 11 10 14 14 H 1.09003 * 110.32054 * 241.00492 * 13 12 11 15 15 C 1.50695 * 110.32614 * 118.89668 * 13 12 11 16 16 H 1.08001 * 120.00220 * 241.45688 * 15 13 12 17 17 C 1.37882 * 119.99845 * 61.45384 * 15 13 12 18 18 N 1.31509 * 119.99913 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99875 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46892 * 269.99849 * 19 17 15 21 21 H 1.48498 * 109.47066 * 150.00072 * 19 17 15 22 22 H 1.48499 * 109.47048 * 29.99873 * 19 17 15 23 23 C 1.48561 * 110.99918 * 59.14853 * 10 9 8 24 24 H 1.09007 * 109.46728 * 270.02120 * 1 2 3 25 25 H 1.09001 * 109.47454 * 30.01110 * 1 2 3 26 26 H 1.08990 * 109.47568 * 150.01927 * 1 2 3 27 27 H 1.08006 * 119.61676 * 359.97438 * 3 2 1 28 28 H 1.07994 * 119.61394 * 180.02562 * 5 4 3 29 29 H 1.07993 * 120.41874 * 180.26207 * 6 5 4 30 30 H 1.08999 * 109.47118 * 324.99982 * 8 7 2 31 31 H 1.08998 * 109.47440 * 204.99898 * 8 7 2 32 32 H 1.09001 * 109.47330 * 54.96154 * 9 8 7 33 33 H 1.08993 * 109.46992 * 294.95788 * 9 8 7 34 34 H 1.09002 * 110.41003 * 82.18029 * 11 10 9 35 35 H 1.08999 * 110.41533 * 319.74116 * 11 10 9 36 36 H 1.08997 * 110.32000 * 264.95708 * 12 11 10 37 37 H 1.08999 * 110.40816 * 142.79788 * 12 11 10 38 38 H 0.96994 * 120.00457 * 359.97438 * 18 17 15 39 39 H 1.08998 * 110.41191 * 40.26010 * 23 10 9 40 40 H 1.08994 * 110.40807 * 277.81651 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0822 -0.0005 6 6 3.5948 -1.1471 0.0053 7 6 2.2088 -1.1955 0.0005 8 6 1.4831 -2.5161 0.0017 9 6 1.1267 -2.9035 -1.4349 10 7 0.5277 -4.2449 -1.4461 11 6 0.0494 -4.6029 -2.8063 12 6 -0.9902 -5.7198 -2.5715 13 6 -1.4809 -5.5128 -1.1238 14 1 -1.2570 -6.3915 -0.5189 15 6 -2.9612 -5.2310 -1.1081 16 1 -3.3281 -4.2921 -0.7203 17 6 -3.8472 -6.1717 -1.5889 18 7 -3.4004 -7.3151 -2.0607 19 14 -5.6821 -5.8221 -1.5701 20 1 -6.2627 -6.2938 -0.2872 21 1 -6.3331 -6.5337 -2.6993 22 1 -5.9091 -4.3612 -1.7088 23 6 -0.6965 -4.2883 -0.6056 24 1 -0.3633 0.0004 1.0278 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3634 -0.8900 -0.5135 27 1 1.6675 2.1277 -0.0004 28 1 5.3046 0.1285 -0.0005 29 1 4.1737 -2.0588 0.0095 30 1 0.5706 -2.4287 0.5914 31 1 2.1244 -3.2828 0.4363 32 1 2.0294 -2.9036 -2.0458 33 1 0.4145 -2.1842 -1.8391 34 1 0.8749 -4.9735 -3.4141 35 1 -0.4186 -3.7421 -3.2836 36 1 -0.5238 -6.6993 -2.6768 37 1 -1.8204 -5.6194 -3.2707 38 1 -2.4476 -7.4965 -2.0708 39 1 -1.2813 -3.3781 -0.7384 40 1 -0.4327 -4.4220 0.4435 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397631723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:03 Heat of formation + Delta-G solvation = 0.445480 kcal Electronic energy + Delta-G solvation = -19232.555424 eV Core-core repulsion = 16431.357254 eV Total energy + Delta-G solvation = -2801.198170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35958 -39.93592 -36.48319 -35.06266 -33.51369 -32.25151 -30.19767 -29.20463 -28.02461 -26.37664 -24.68065 -23.42444 -22.35845 -21.77657 -21.14051 -18.97461 -17.74302 -17.47439 -16.79134 -16.30571 -15.97141 -15.70240 -15.54039 -15.25518 -14.92121 -14.45834 -14.23160 -13.77010 -13.65489 -13.55790 -13.54728 -13.04617 -12.92887 -12.72604 -12.44189 -12.39109 -12.17500 -11.96800 -11.87505 -11.73154 -11.38363 -10.56183 -10.44932 -10.41311 -10.40549 -9.83727 -9.47190 -8.58116 -6.31600 0.17872 0.26019 1.53473 1.61525 1.78662 2.57459 2.79608 3.05242 3.21517 3.57414 3.70780 3.81175 3.93123 3.96121 4.02875 4.03925 4.19124 4.31530 4.38914 4.45547 4.46986 4.54945 4.70087 4.71367 4.76884 4.78443 4.86404 4.90151 5.01390 5.06370 5.09704 5.12951 5.25872 5.37589 5.46053 5.62031 5.70362 5.80673 6.10837 6.15811 6.24506 6.67431 7.01970 7.49374 8.81187 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033643 B = 0.004183 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.063381 B = 6692.068729 C = 7257.283498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.139 4.139 3 C 0.088 3.912 4 N -0.511 5.511 5 C 0.083 3.917 6 C -0.165 4.165 7 C -0.046 4.046 8 C -0.073 4.073 9 C 0.057 3.943 10 N -0.516 5.516 11 C 0.046 3.954 12 C -0.106 4.106 13 C 0.019 3.981 14 H -0.006 1.006 15 C -0.607 4.607 16 H 0.046 0.954 17 C -0.030 4.030 18 N -0.937 5.937 19 Si 1.113 2.887 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.062 3.938 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.172 0.828 28 H 0.179 0.821 29 H 0.153 0.847 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.263 0.737 39 H 0.033 0.967 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.717 14.336 3.072 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.141 4.141 3 C -0.069 4.069 4 N -0.219 5.219 5 C -0.073 4.073 6 C -0.185 4.185 7 C -0.055 4.055 8 C -0.110 4.110 9 C -0.071 4.071 10 N -0.240 5.240 11 C -0.081 4.081 12 C -0.145 4.145 13 C 0.000 4.000 14 H 0.012 0.988 15 C -0.645 4.645 16 H 0.064 0.936 17 C -0.228 4.228 18 N -0.574 5.574 19 Si 0.936 3.064 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.066 4.066 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.189 0.811 28 H 0.196 0.804 29 H 0.171 0.829 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.132 14.148 2.873 18.230 hybrid contribution 0.388 -0.013 0.064 0.394 sum 11.520 14.135 2.937 18.470 Atomic orbital electron populations 1.20817 0.89632 1.03495 1.03237 1.21008 0.98181 0.93707 1.01194 1.22961 0.89900 0.98099 0.95911 1.67688 1.08881 1.32388 1.12987 1.23144 1.01470 0.87337 0.95382 1.22316 0.94253 1.00608 1.01288 1.20278 0.94325 0.94855 0.95993 1.20523 1.00551 0.93236 0.96690 1.22197 0.99362 0.88667 0.96876 1.65437 1.25118 1.25683 1.07755 1.22996 0.97135 0.97120 0.90891 1.22297 0.96388 0.96739 0.99091 1.19559 0.94581 0.93512 0.92349 0.98796 1.22376 0.92453 1.04509 1.45169 0.93605 1.27146 1.10154 0.92727 0.92791 1.70847 1.17177 1.24703 1.44701 0.82969 0.70123 0.76074 0.77240 1.20091 1.21082 1.19669 1.22911 0.89183 0.97379 0.97095 0.90115 0.89649 0.92310 0.81126 0.80440 0.82890 0.90883 0.89441 0.89951 0.95082 0.89350 0.94395 0.94363 0.94197 0.92663 0.94858 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 9.30 71.24 0.66 -1.57 16 2 C -0.14 -2.99 5.90 -19.77 -0.12 -3.11 16 3 C 0.09 1.84 10.86 84.69 0.92 2.76 16 4 N -0.51 -11.69 10.36 -195.84 -2.03 -13.72 16 5 C 0.08 1.60 11.18 84.67 0.95 2.54 16 6 C -0.17 -3.19 9.80 22.36 0.22 -2.97 16 7 C -0.05 -1.02 5.17 -19.67 -0.10 -1.12 16 8 C -0.07 -1.75 4.39 29.85 0.13 -1.62 16 9 C 0.06 1.59 4.79 86.30 0.41 2.00 16 10 N -0.52 -18.08 5.45 -881.49 -4.81 -22.89 16 11 C 0.05 1.72 6.49 86.45 0.56 2.28 16 12 C -0.11 -4.95 5.03 31.49 0.16 -4.79 16 13 C 0.02 0.96 2.65 -10.65 -0.03 0.93 16 14 H -0.01 -0.34 8.04 -2.39 -0.02 -0.36 16 15 C -0.61 -33.56 8.37 25.60 0.21 -33.35 16 16 H 0.05 2.50 7.58 -2.91 -0.02 2.47 16 17 C -0.03 -1.66 5.09 84.66 0.43 -1.23 16 18 N -0.94 -56.49 13.27 21.45 0.28 -56.21 16 19 Si 1.11 49.61 29.90 68.60 2.05 51.66 16 20 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 C 0.06 2.51 4.86 86.45 0.42 2.93 16 24 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 25 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 26 H 0.06 1.35 5.58 -2.39 -0.01 1.33 16 27 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 28 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.07 1.88 6.16 -2.39 -0.01 1.86 16 31 H 0.09 2.06 8.07 -2.39 -0.02 2.04 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.03 0.90 6.72 -2.39 -0.02 0.88 16 34 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.04 1.38 7.89 -2.39 -0.02 1.36 16 36 H 0.04 1.77 7.92 -2.39 -0.02 1.76 16 37 H 0.04 2.05 7.23 -2.39 -0.02 2.04 16 38 H 0.26 15.93 6.00 -92.71 -0.56 15.37 16 39 H 0.03 1.37 7.54 -2.39 -0.02 1.35 16 40 H 0.07 2.68 7.78 -2.39 -0.02 2.66 16 Total: -1.00 -64.65 317.41 1.55 -63.10 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.22 Total: 14.38 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 4.83 Total: -36.32 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -6.55 Total: -92.81 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.05 Total: 51.66 kcal Total: -64.65 1.55 -63.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.541 kcal (2) G-P(sol) polarization free energy of solvation -64.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds