Wall clock time and date at job start Mon Mar 30 2020 07:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50702 * 119.99720 * 2 1 4 4 C 1.31000 * 120.00122 * 179.97438 * 2 1 3 5 5 C 1.50706 * 119.99959 * 5.62738 * 4 2 1 6 6 C 1.52999 * 109.47443 * 125.10049 * 5 4 2 7 7 N 1.46500 * 109.46878 * 179.97438 * 6 5 4 8 8 C 1.39857 * 119.99599 * 180.02562 * 7 6 5 9 9 C 1.39599 * 119.83729 * 359.97438 * 8 7 6 10 10 C 1.38067 * 120.54753 * 179.97438 * 9 8 7 11 11 C 1.38732 * 120.21688 * 0.02688 * 10 9 8 12 12 N 1.38863 * 120.16265 * 179.97438 * 11 10 9 13 13 C 1.41559 * 119.67677 * 0.02562 * 11 10 9 14 14 C 1.41031 * 120.27164 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99669 * 25.62717 * 14 13 11 16 16 C 1.39886 * 120.00162 * 205.63248 * 14 13 11 17 17 N 1.30905 * 120.00010 * 14.66995 * 16 14 13 18 18 Si 1.86801 * 119.99770 * 194.66587 * 16 14 13 19 19 H 1.48505 * 109.46766 * 90.00164 * 18 16 14 20 20 H 1.48497 * 109.47075 * 209.99713 * 18 16 14 21 21 H 1.48494 * 109.47693 * 330.00171 * 18 16 14 22 22 C 1.37999 * 119.83578 * 179.72695 * 8 7 6 23 23 H 1.08998 * 109.47111 * 238.83911 * 1 2 3 24 24 H 1.09001 * 109.47022 * 358.84004 * 1 2 3 25 25 H 1.09003 * 109.47344 * 118.83783 * 1 2 3 26 26 H 1.08998 * 109.46841 * 269.99835 * 3 2 1 27 27 H 1.08999 * 109.47083 * 30.00036 * 3 2 1 28 28 H 1.08998 * 109.46829 * 149.99926 * 3 2 1 29 29 H 1.07997 * 120.00409 * 185.61699 * 4 2 1 30 30 H 1.09003 * 109.47019 * 5.10018 * 5 4 2 31 31 H 1.08998 * 109.46830 * 245.10520 * 5 4 2 32 32 H 1.08998 * 109.46751 * 300.00002 * 6 5 4 33 33 H 1.09003 * 109.47039 * 59.99981 * 6 5 4 34 34 H 0.97001 * 120.00102 * 359.97438 * 7 6 5 35 35 H 1.07996 * 119.73433 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.88717 * 180.02562 * 10 9 8 37 37 H 0.97001 * 120.00100 * 0.02562 * 12 11 10 38 38 H 0.97001 * 120.00284 * 179.97438 * 12 11 10 39 39 H 0.97000 * 119.99728 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.12023 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4140 -2.4366 -0.1269 6 6 1.9776 -3.2356 -1.3036 7 7 1.2507 -4.5016 -1.4270 8 6 1.5899 -5.4070 -2.4376 9 6 2.6212 -5.1006 -3.3271 10 6 2.9685 -5.9839 -4.3299 11 6 2.2934 -7.1884 -4.4641 12 7 2.6433 -8.0757 -5.4733 13 6 1.2453 -7.5080 -3.5678 14 6 0.5510 -8.7292 -3.6924 15 1 1.0319 -9.5792 -4.1536 16 6 -0.7606 -8.8396 -3.2187 17 7 -1.4441 -7.7619 -2.9271 18 14 -1.5368 -10.5249 -3.0025 19 1 -1.2633 -11.0235 -1.6306 20 1 -3.0038 -10.4245 -3.2094 21 1 -0.9602 -11.4666 -3.9954 22 6 0.9068 -6.6010 -2.5472 23 1 -0.3633 -0.5317 0.8794 24 1 -0.3633 1.0275 0.0208 25 1 -0.3634 -0.4957 -0.9002 26 1 2.4421 1.6198 -1.0277 27 1 1.6713 2.0648 0.5138 28 1 3.2128 1.1748 0.5138 29 1 3.2381 -1.1367 0.0920 30 1 0.3570 -2.2330 -0.2989 31 1 1.5282 -3.0125 0.7914 32 1 1.8633 -2.6595 -2.2219 33 1 3.0345 -3.4391 -1.1316 34 1 0.5348 -4.7122 -0.8073 35 1 3.1518 -4.1650 -3.2303 36 1 3.7684 -5.7362 -5.0120 37 1 3.3616 -7.8541 -6.0864 38 1 2.1699 -8.9174 -5.5648 39 1 -2.3534 -7.8385 -2.5983 40 1 0.1124 -6.8365 -1.8545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397642463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:44 Heat of formation + Delta-G solvation = 21.364245 kcal Electronic energy + Delta-G solvation = -18577.589810 eV Core-core repulsion = 15777.298746 eV Total energy + Delta-G solvation = -2800.291064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.02322 -37.15032 -35.19641 -33.42576 -32.39753 -30.17130 -29.35788 -27.90970 -26.86703 -25.03499 -24.48065 -22.15396 -20.72187 -19.63869 -17.93725 -16.97609 -16.05886 -15.42606 -15.35496 -14.98172 -14.65128 -14.50424 -13.98069 -13.77695 -13.59232 -12.78207 -12.54433 -12.36749 -12.03258 -11.98381 -11.89000 -11.67187 -11.45189 -11.30624 -11.20672 -10.99883 -10.89684 -10.76877 -10.32605 -9.83832 -9.64862 -9.29053 -9.03993 -8.68805 -7.71692 -7.18138 -6.57256 -5.49534 -4.03928 2.13530 2.93581 3.15177 3.17667 3.34111 3.52146 4.05573 4.45304 4.84388 4.85514 4.92308 5.27456 5.33878 5.42591 5.45251 5.47416 5.54590 5.69458 5.77589 5.83774 5.88253 5.92900 5.97081 6.34609 6.35493 6.40769 6.65959 6.68017 6.90456 7.15791 7.19302 7.35984 7.53065 7.74269 7.92490 8.04577 8.16395 8.49490 8.79796 8.94402 8.98224 9.03824 9.29361 9.37708 10.41109 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.004143 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.365715 B = 6756.626892 C = 7722.840464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.141 4.141 3 C -0.114 4.114 4 C -0.154 4.154 5 C -0.106 4.106 6 C 0.146 3.854 7 N -0.764 5.764 8 C 0.176 3.824 9 C -0.255 4.255 10 C -0.153 4.153 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.094 3.906 14 C -0.463 4.463 15 H 0.071 0.929 16 C 0.075 3.925 17 N -0.802 5.802 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.266 1.266 22 C -0.200 4.200 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.387 0.613 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 10.466 4.987 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.141 4.141 3 C -0.171 4.171 4 C -0.173 4.173 5 C -0.143 4.143 6 C 0.021 3.979 7 N -0.400 5.400 8 C 0.078 3.922 9 C -0.278 4.278 10 C -0.177 4.177 11 C -0.016 4.016 12 N -0.432 5.432 13 C 0.089 3.911 14 C -0.494 4.494 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.429 5.429 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.190 1.190 22 C -0.225 4.225 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.220 0.780 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.199 0.801 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.952 10.727 5.082 12.231 hybrid contribution -0.554 -0.960 0.019 1.108 sum 2.398 9.767 5.102 11.277 Atomic orbital electron populations 1.20843 0.92455 1.01905 1.02258 1.21597 0.95834 0.94964 1.01705 1.20823 0.99471 0.94914 1.01902 1.22545 0.99443 0.93522 1.01769 1.20914 1.00071 0.94281 0.99028 1.20861 0.95463 0.85343 0.96250 1.44336 1.41279 1.18483 1.35860 1.17527 0.95215 0.90123 0.89351 1.19624 1.04579 1.01048 1.02592 1.19703 1.02030 0.95030 1.00985 1.17860 1.00053 0.91212 0.92521 1.41808 1.42675 1.22748 1.35965 1.16977 0.90659 0.93661 0.89830 1.19141 0.97332 0.97322 1.35652 0.91142 1.25749 0.97218 0.97586 0.93477 1.69882 1.09949 1.29134 1.33943 0.86408 0.78166 0.83076 0.79479 1.19653 1.20641 1.19005 1.20545 1.05078 0.94496 1.02381 0.91641 0.92445 0.91288 0.91546 0.92241 0.92116 0.87351 0.90771 0.90984 0.93678 0.93722 0.78021 0.89747 0.89813 0.80137 0.78357 0.91525 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 8.56 36.01 0.31 -0.87 16 2 C -0.14 -1.51 6.05 -101.07 -0.61 -2.12 16 3 C -0.11 -1.00 9.97 36.01 0.36 -0.64 16 4 C -0.15 -1.80 9.11 -36.02 -0.33 -2.13 16 5 C -0.11 -1.37 5.56 -27.88 -0.16 -1.53 16 6 C 0.15 2.39 4.89 -4.04 -0.02 2.37 16 7 N -0.76 -15.14 5.74 -58.64 -0.34 -15.47 16 8 C 0.18 4.23 6.64 -83.78 -0.56 3.67 16 9 C -0.25 -5.98 9.31 -39.14 -0.36 -6.34 16 10 C -0.15 -3.61 9.86 -39.46 -0.39 -4.00 16 11 C 0.08 2.09 6.79 -83.23 -0.56 1.53 16 12 N -0.89 -18.60 8.98 32.75 0.29 -18.30 16 13 C 0.09 2.54 5.58 -106.65 -0.60 1.94 16 14 C -0.46 -12.33 8.50 -37.91 -0.32 -12.65 16 15 H 0.07 1.78 6.67 -52.48 -0.35 1.43 16 16 C 0.08 1.92 5.19 -17.33 -0.09 1.83 16 17 N -0.80 -21.20 10.87 55.55 0.60 -20.59 16 18 Si 0.90 19.16 29.58 -169.99 -5.03 14.13 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 C -0.20 -5.31 8.50 -38.75 -0.33 -5.64 16 23 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 24 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 25 H 0.07 0.74 7.47 -51.93 -0.39 0.36 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.45 8.04 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.04 -51.93 -0.42 0.07 16 29 H 0.11 1.19 8.02 -52.49 -0.42 0.77 16 30 H 0.07 0.96 5.84 -51.93 -0.30 0.65 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.78 7.94 -51.93 -0.41 0.36 16 33 H 0.04 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.39 7.26 8.48 -40.82 -0.35 6.92 16 35 H 0.08 1.81 6.69 -52.49 -0.35 1.46 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 38 H 0.39 7.96 7.04 -40.82 -0.29 7.67 16 39 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.12 3.27 6.14 -52.48 -0.32 2.94 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -28.76 326.75 -9.22 -37.98 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -6.02 Total: 21.91 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -3.66 Total: -24.58 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.56 Total: -54.37 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.76 -9.22 -37.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397642463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.349 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds