Wall clock time and date at job start Mon Mar 30 2020 07:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50702 * 119.99720 * 2 1 4 4 C 1.31000 * 120.00122 * 179.97438 * 2 1 3 5 5 C 1.50706 * 119.99959 * 5.62738 * 4 2 1 6 6 C 1.52999 * 109.47443 * 125.10049 * 5 4 2 7 7 N 1.46500 * 109.46878 * 179.97438 * 6 5 4 8 8 C 1.39857 * 119.99599 * 180.02562 * 7 6 5 9 9 C 1.39599 * 119.83729 * 359.97438 * 8 7 6 10 10 C 1.38067 * 120.54753 * 179.97438 * 9 8 7 11 11 C 1.38732 * 120.21688 * 0.02688 * 10 9 8 12 12 N 1.38863 * 120.16265 * 179.97438 * 11 10 9 13 13 C 1.41559 * 119.67677 * 0.02562 * 11 10 9 14 14 C 1.41031 * 120.27164 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99669 * 25.62717 * 14 13 11 16 16 C 1.39886 * 120.00162 * 205.63248 * 14 13 11 17 17 N 1.30905 * 120.00010 * 14.66995 * 16 14 13 18 18 Si 1.86801 * 119.99770 * 194.66587 * 16 14 13 19 19 H 1.48505 * 109.46766 * 90.00164 * 18 16 14 20 20 H 1.48497 * 109.47075 * 209.99713 * 18 16 14 21 21 H 1.48494 * 109.47693 * 330.00171 * 18 16 14 22 22 C 1.37999 * 119.83578 * 179.72695 * 8 7 6 23 23 H 1.08998 * 109.47111 * 238.83911 * 1 2 3 24 24 H 1.09001 * 109.47022 * 358.84004 * 1 2 3 25 25 H 1.09003 * 109.47344 * 118.83783 * 1 2 3 26 26 H 1.08998 * 109.46841 * 269.99835 * 3 2 1 27 27 H 1.08999 * 109.47083 * 30.00036 * 3 2 1 28 28 H 1.08998 * 109.46829 * 149.99926 * 3 2 1 29 29 H 1.07997 * 120.00409 * 185.61699 * 4 2 1 30 30 H 1.09003 * 109.47019 * 5.10018 * 5 4 2 31 31 H 1.08998 * 109.46830 * 245.10520 * 5 4 2 32 32 H 1.08998 * 109.46751 * 300.00002 * 6 5 4 33 33 H 1.09003 * 109.47039 * 59.99981 * 6 5 4 34 34 H 0.97001 * 120.00102 * 359.97438 * 7 6 5 35 35 H 1.07996 * 119.73433 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.88717 * 180.02562 * 10 9 8 37 37 H 0.97001 * 120.00100 * 0.02562 * 12 11 10 38 38 H 0.97001 * 120.00284 * 179.97438 * 12 11 10 39 39 H 0.97000 * 119.99728 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.12023 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4140 -2.4366 -0.1269 6 6 1.9776 -3.2356 -1.3036 7 7 1.2507 -4.5016 -1.4270 8 6 1.5899 -5.4070 -2.4376 9 6 2.6212 -5.1006 -3.3271 10 6 2.9685 -5.9839 -4.3299 11 6 2.2934 -7.1884 -4.4641 12 7 2.6433 -8.0757 -5.4733 13 6 1.2453 -7.5080 -3.5678 14 6 0.5510 -8.7292 -3.6924 15 1 1.0319 -9.5792 -4.1536 16 6 -0.7606 -8.8396 -3.2187 17 7 -1.4441 -7.7619 -2.9271 18 14 -1.5368 -10.5249 -3.0025 19 1 -1.2633 -11.0235 -1.6306 20 1 -3.0038 -10.4245 -3.2094 21 1 -0.9602 -11.4666 -3.9954 22 6 0.9068 -6.6010 -2.5472 23 1 -0.3633 -0.5317 0.8794 24 1 -0.3633 1.0275 0.0208 25 1 -0.3634 -0.4957 -0.9002 26 1 2.4421 1.6198 -1.0277 27 1 1.6713 2.0648 0.5138 28 1 3.2128 1.1748 0.5138 29 1 3.2381 -1.1367 0.0920 30 1 0.3570 -2.2330 -0.2989 31 1 1.5282 -3.0125 0.7914 32 1 1.8633 -2.6595 -2.2219 33 1 3.0345 -3.4391 -1.1316 34 1 0.5348 -4.7122 -0.8073 35 1 3.1518 -4.1650 -3.2303 36 1 3.7684 -5.7362 -5.0120 37 1 3.3616 -7.8541 -6.0864 38 1 2.1699 -8.9174 -5.5648 39 1 -2.3534 -7.8385 -2.5983 40 1 0.1124 -6.8365 -1.8545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397642463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:44 Heat of formation + Delta-G solvation = 5.112504 kcal Electronic energy + Delta-G solvation = -18578.294538 eV Core-core repulsion = 15777.298746 eV Total energy + Delta-G solvation = -2800.995793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.77709 -38.25922 -36.67972 -35.32611 -33.91059 -31.52054 -31.27713 -28.71581 -28.34561 -26.74743 -25.95880 -23.60629 -22.39467 -21.44635 -19.07452 -18.60597 -17.81125 -17.23481 -16.68026 -16.41320 -16.30457 -15.89873 -15.01985 -14.79864 -14.73290 -14.47840 -14.16469 -13.72228 -13.68409 -13.26379 -13.14742 -12.93691 -12.76937 -12.72967 -12.68843 -12.55499 -12.16280 -12.08674 -11.79202 -11.61708 -11.29520 -11.16222 -10.94072 -9.56682 -9.40795 -9.13289 -8.47987 -7.30076 -6.00400 1.12711 1.25672 1.41885 1.51787 1.53343 1.66275 2.27990 2.91706 3.00542 3.77509 3.94077 3.97705 4.11331 4.20916 4.30132 4.48741 4.59226 4.64192 4.71216 4.84328 4.86139 4.88793 4.95765 5.10160 5.11522 5.13495 5.24322 5.28140 5.35553 5.44470 5.67810 5.79927 5.89486 6.03966 6.07367 6.17865 6.28823 6.57494 6.97825 7.06542 7.13644 7.27754 7.48003 7.67289 8.52330 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.004143 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.365715 B = 6756.626892 C = 7722.840464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C -0.116 4.116 4 C -0.173 4.173 5 C -0.093 4.093 6 C 0.148 3.852 7 N -0.761 5.761 8 C 0.171 3.829 9 C -0.260 4.260 10 C -0.158 4.158 11 C 0.070 3.930 12 N -0.879 5.879 13 C 0.060 3.940 14 C -0.491 4.491 15 H 0.074 0.926 16 C 0.031 3.969 17 N -0.834 5.834 18 Si 0.977 3.023 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.258 1.258 22 C -0.226 4.226 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.390 0.610 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 11.202 5.139 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.135 4.135 3 C -0.172 4.172 4 C -0.192 4.192 5 C -0.131 4.131 6 C 0.023 3.977 7 N -0.396 5.396 8 C 0.070 3.930 9 C -0.284 4.284 10 C -0.183 4.183 11 C -0.032 4.032 12 N -0.423 5.423 13 C 0.055 3.945 14 C -0.522 4.522 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.462 5.462 18 Si 0.799 3.201 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.182 1.182 22 C -0.251 4.251 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.223 0.777 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.398 11.487 5.228 13.070 hybrid contribution -0.646 -1.061 -0.029 1.242 sum 2.752 10.426 5.199 11.971 Atomic orbital electron populations 1.20896 0.92164 1.02900 1.01880 1.21908 0.96318 0.95608 0.99644 1.20876 0.99783 0.94062 1.02491 1.22501 0.99792 0.92998 1.03864 1.20771 1.00051 0.94671 0.97586 1.20981 0.95297 0.83963 0.97422 1.44440 1.41403 1.18961 1.34750 1.17657 0.94954 0.90080 0.90263 1.19927 1.04348 1.01835 1.02277 1.20048 1.02377 0.94508 1.01321 1.18031 0.99852 0.92271 0.93089 1.41679 1.43025 1.22201 1.35393 1.17380 0.91982 0.94372 0.90805 1.19406 0.98197 0.97604 1.37003 0.90759 1.26590 0.97411 1.01396 0.92702 1.69967 1.10422 1.31276 1.34531 0.85285 0.77265 0.78137 0.79402 1.19385 1.19980 1.18203 1.20521 1.05673 0.96045 1.02838 0.91351 0.90860 0.92289 0.91073 0.90920 0.91427 0.86673 0.90775 0.90703 0.94389 0.93652 0.77727 0.87744 0.87108 0.78194 0.78190 0.91088 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.56 71.24 0.61 -1.63 16 2 C -0.13 -2.64 6.05 -16.49 -0.10 -2.74 16 3 C -0.12 -1.74 9.97 71.24 0.71 -1.03 16 4 C -0.17 -3.79 9.11 25.65 0.23 -3.55 16 5 C -0.09 -2.35 5.56 29.85 0.17 -2.18 16 6 C 0.15 4.74 4.89 86.38 0.42 5.16 16 7 N -0.76 -30.31 5.74 -339.44 -1.95 -32.26 16 8 C 0.17 8.29 6.64 38.13 0.25 8.54 16 9 C -0.26 -12.03 9.31 22.56 0.21 -11.82 16 10 C -0.16 -7.30 9.86 22.35 0.22 -7.08 16 11 C 0.07 3.44 6.79 38.97 0.26 3.71 16 12 N -0.88 -36.11 8.98 -50.31 -0.45 -36.56 16 13 C 0.06 3.30 5.58 -21.18 -0.12 3.18 16 14 C -0.49 -26.61 8.50 23.35 0.20 -26.41 16 15 H 0.07 3.81 6.67 -2.91 -0.02 3.79 16 16 C 0.03 1.63 5.19 85.23 0.44 2.07 16 17 N -0.83 -45.18 10.87 21.82 0.24 -44.94 16 18 Si 0.98 39.56 29.58 68.60 2.03 41.59 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.23 -12.35 8.50 22.81 0.19 -12.15 16 23 H 0.07 1.22 8.03 -2.39 -0.02 1.20 16 24 H 0.07 1.10 7.93 -2.39 -0.02 1.08 16 25 H 0.06 1.21 7.47 -2.39 -0.02 1.19 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 0.91 8.04 -2.39 -0.02 0.89 16 28 H 0.07 0.93 8.04 -2.39 -0.02 0.91 16 29 H 0.12 2.34 8.02 -2.91 -0.02 2.32 16 30 H 0.07 1.86 5.84 -2.39 -0.01 1.84 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.28 7.94 -2.39 -0.02 1.26 16 33 H 0.05 1.46 7.94 -2.39 -0.02 1.44 16 34 H 0.39 14.89 8.48 -92.71 -0.79 14.10 16 35 H 0.10 4.33 6.69 -2.91 -0.02 4.31 16 36 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.39 13.23 8.83 -92.71 -0.82 12.41 16 38 H 0.39 15.82 7.04 -92.71 -0.65 15.17 16 39 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 40 H 0.10 5.74 6.14 -2.91 -0.02 5.72 16 Total: -1.00 -61.91 326.75 2.38 -59.53 By element: Atomic # 1 Polarization: 59.76 SS G_CDS: -1.19 Total: 58.56 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 3.71 Total: -45.93 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -2.16 Total: -113.76 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -61.91 2.38 -59.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397642463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.647 kcal (2) G-P(sol) polarization free energy of solvation -61.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds