Wall clock time and date at job start Mon Mar 30 2020 07:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47298 * 2 1 4 4 C 1.38674 * 120.41115 * 90.00123 * 3 2 1 5 5 C 1.38628 * 118.41534 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.16442 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.62097 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.47289 * 94.99559 * 7 6 5 9 9 C 1.47900 * 110.99721 * 290.12839 * 8 7 6 10 10 C 1.53991 * 107.05523 * 145.84609 * 9 8 7 11 11 C 1.54600 * 105.14041 * 358.77189 * 10 9 8 12 12 H 1.08996 * 110.72362 * 96.58143 * 11 10 9 13 13 C 1.50699 * 110.72387 * 219.69015 * 11 10 9 14 14 H 1.07999 * 120.00803 * 118.54532 * 13 11 10 15 15 C 1.37881 * 119.99889 * 298.54353 * 13 11 10 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.48530 * 110.99463 * 47.52394 * 8 7 6 22 22 N 1.31851 * 120.75910 * 0.25052 * 6 5 4 23 23 C 1.31887 * 121.72837 * 359.48283 * 22 6 5 24 24 H 1.09004 * 109.47279 * 59.99565 * 1 2 3 25 25 H 1.09001 * 109.46848 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47107 * 299.99484 * 1 2 3 27 27 H 1.09006 * 109.46600 * 240.00073 * 2 1 3 28 28 H 1.08992 * 109.47049 * 120.00734 * 2 1 3 29 29 H 1.07993 * 120.79340 * 359.95929 * 4 3 2 30 30 H 1.07999 * 120.41876 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.46977 * 334.99884 * 7 6 5 32 32 H 1.08995 * 109.47718 * 214.99985 * 7 6 5 33 33 H 1.08994 * 109.92455 * 26.49033 * 9 8 7 34 34 H 1.09005 * 110.07966 * 265.28514 * 9 8 7 35 35 H 1.09002 * 110.30762 * 239.85912 * 10 9 8 36 36 H 1.09004 * 110.31479 * 117.68765 * 10 9 8 37 37 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.66521 * 81.84779 * 21 8 7 39 39 H 1.08995 * 110.66819 * 318.71147 * 21 8 7 40 40 H 1.07996 * 119.61617 * 180.27123 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2664 2.0826 1.1959 5 6 2.7288 3.3886 1.1477 6 6 2.9392 3.9837 -0.0821 7 6 3.4411 5.4031 -0.1466 8 7 4.9033 5.3996 -0.2881 9 6 5.5551 4.9376 0.9566 10 6 6.8185 4.1603 0.5432 11 6 6.8205 4.1858 -1.0026 12 1 7.4545 4.9908 -1.3742 13 6 7.2679 2.8580 -1.5573 14 1 6.5995 2.2786 -2.1769 15 6 8.5308 2.3826 -1.2737 16 7 8.9215 1.2240 -1.7582 17 14 9.6868 3.3842 -0.2014 18 1 9.4949 3.0055 1.2217 19 1 9.3931 4.8298 -0.3728 20 1 11.0913 3.1138 -0.6005 21 6 5.3332 4.4506 -1.3467 22 7 2.7006 3.3255 -1.1994 23 6 2.2652 2.0806 -1.1915 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.0924 1.5924 2.1423 30 1 2.9214 3.9346 2.0594 31 1 3.1659 5.9277 0.7684 32 1 2.9944 5.9080 -1.0031 33 1 4.8804 4.2832 1.5083 34 1 5.8306 5.7925 1.5743 35 1 6.7659 3.1333 0.9045 36 1 7.7100 4.6534 0.9308 37 1 9.8097 0.8894 -1.5584 38 1 5.2417 4.9067 -2.3325 39 1 4.7558 3.5276 -1.2935 40 1 2.0851 1.5723 -2.1272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397645951.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:41 Heat of formation + Delta-G solvation = 37.413827 kcal Electronic energy + Delta-G solvation = -19828.698090 eV Core-core repulsion = 17029.102987 eV Total energy + Delta-G solvation = -2799.595102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47796 -38.05570 -34.87273 -33.19348 -32.00815 -31.40538 -29.29570 -28.32202 -26.13078 -24.22411 -23.45620 -22.83723 -21.05587 -20.10792 -19.46274 -16.68249 -16.52751 -16.29355 -15.41840 -15.28909 -14.76699 -14.05693 -13.95459 -13.70013 -13.63948 -13.24807 -12.99869 -12.77759 -12.56125 -12.15213 -11.95004 -11.56226 -11.39733 -11.28332 -11.05933 -10.93048 -10.61431 -10.47369 -9.96438 -9.86384 -9.46789 -9.44747 -9.25290 -8.93377 -8.63898 -8.52025 -7.85545 -6.03855 -4.02270 1.24140 1.45042 3.31125 3.40242 3.44237 3.91411 4.40661 4.45800 4.69398 4.77660 4.80120 4.94123 5.05421 5.23484 5.26480 5.28369 5.40947 5.50408 5.58560 5.64105 5.75919 5.77927 5.84202 5.94212 6.02732 6.05028 6.09320 6.23077 6.32716 6.39994 6.40466 6.70172 6.83143 6.85494 6.90148 7.09443 7.37167 7.53330 7.65967 7.86200 8.21171 8.57688 9.00019 9.59266 11.09443 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.006420 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.266103 B = 4360.517909 C = 5079.884529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.076 4.076 5 C -0.163 4.163 6 C 0.097 3.903 7 C 0.094 3.906 8 N -0.509 5.509 9 C 0.032 3.968 10 C -0.140 4.140 11 C 0.014 3.986 12 H 0.037 0.963 13 C -0.506 4.506 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.279 1.279 19 H -0.263 1.263 20 H -0.294 1.294 21 C 0.047 3.953 22 N -0.462 5.462 23 C 0.105 3.895 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.619 1.891 7.045 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.140 4.140 4 C -0.102 4.102 5 C -0.183 4.183 6 C -0.041 4.041 7 C -0.035 4.035 8 N -0.231 5.231 9 C -0.096 4.096 10 C -0.178 4.178 11 C -0.006 4.006 12 H 0.055 0.945 13 C -0.544 4.544 14 H 0.090 0.910 15 C -0.130 4.130 16 N -0.542 5.542 17 Si 0.708 3.292 18 H -0.205 1.205 19 H -0.188 1.188 20 H -0.221 1.221 21 C -0.080 4.080 22 N -0.171 5.171 23 C -0.053 4.053 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.165 2.764 6.112 16.582 hybrid contribution 0.412 -0.975 1.725 2.024 sum -14.752 1.788 7.837 16.800 Atomic orbital electron populations 1.21748 0.94791 1.01654 1.02046 1.20459 0.95894 0.92105 1.03374 1.20841 1.01252 0.97541 0.94324 1.21386 0.96508 0.94264 0.97991 1.21957 1.01330 0.96164 0.98879 1.22124 0.94829 0.98672 0.88519 1.21379 0.89889 0.89294 1.02944 1.65163 1.03548 1.48394 1.05982 1.22926 0.96493 0.97863 0.92352 1.22878 0.95201 0.99183 1.00528 1.20074 0.92352 0.97766 0.90381 0.94487 1.20957 0.99851 1.02263 1.31375 0.90992 1.24974 0.97730 0.94659 0.95651 1.69910 1.19576 1.19114 1.45574 0.86914 0.79815 0.81573 0.80872 1.20493 1.18760 1.22084 1.23413 0.97254 0.93799 0.93487 1.67645 1.09854 1.08760 1.30822 1.22642 0.94563 0.90660 0.97396 0.92535 0.92340 0.92806 0.90497 0.90935 0.85331 0.85238 0.90055 0.89268 0.94175 0.91580 0.91528 0.93269 0.92774 0.91391 0.92028 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.90 37.16 0.37 -0.88 16 2 C -0.08 -0.84 6.09 -27.88 -0.17 -1.01 16 3 C -0.14 -1.83 5.15 -104.48 -0.54 -2.37 16 4 C -0.08 -0.99 9.86 -39.28 -0.39 -1.38 16 5 C -0.16 -2.30 8.22 -39.44 -0.32 -2.62 16 6 C 0.10 1.57 4.64 -82.59 -0.38 1.19 16 7 C 0.09 1.45 5.84 -4.98 -0.03 1.42 16 8 N -0.51 -9.49 5.54 -231.89 -1.28 -10.77 16 9 C 0.03 0.58 6.46 -2.76 -0.02 0.56 16 10 C -0.14 -3.11 4.69 -25.37 -0.12 -3.23 16 11 C 0.01 0.34 2.46 -89.91 -0.22 0.12 16 12 H 0.04 0.95 7.36 -51.93 -0.38 0.57 16 13 C -0.51 -14.63 9.00 -34.44 -0.31 -14.94 16 14 H 0.07 2.27 8.03 -52.49 -0.42 1.85 16 15 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 16 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 17 Si 0.88 22.25 24.72 -169.99 -4.20 18.05 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.26 -6.44 6.38 56.52 0.36 -6.08 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 C 0.05 1.03 5.57 -1.90 -0.01 1.02 16 22 N -0.46 -7.97 8.37 -9.48 -0.08 -8.05 16 23 C 0.10 1.59 10.86 -17.55 -0.19 1.40 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.79 8.09 -51.93 -0.42 0.36 16 28 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 1.55 7.55 -52.49 -0.40 1.15 16 31 H 0.08 1.04 7.98 -51.93 -0.41 0.62 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.04 0.68 5.28 -51.93 -0.27 0.41 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.58 7.80 -51.93 -0.40 1.17 16 36 H 0.05 1.08 5.94 -51.93 -0.31 0.77 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.06 1.42 4.94 -51.93 -0.26 1.16 16 40 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -31.96 311.73 -8.78 -40.74 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.26 Total: 1.34 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.43 Total: -18.71 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.59 Total: -46.12 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.20 Total: 18.05 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.96 -8.78 -40.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397645951.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.154 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds