Wall clock time and date at job start Mon Mar 30 2020 07:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47298 * 2 1 4 4 C 1.38674 * 120.41115 * 90.00123 * 3 2 1 5 5 C 1.38628 * 118.41534 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.16442 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.62097 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.47289 * 94.99559 * 7 6 5 9 9 C 1.47900 * 110.99721 * 290.12839 * 8 7 6 10 10 C 1.53991 * 107.05523 * 145.84609 * 9 8 7 11 11 C 1.54600 * 105.14041 * 358.77189 * 10 9 8 12 12 H 1.08996 * 110.72362 * 96.58143 * 11 10 9 13 13 C 1.50699 * 110.72387 * 219.69015 * 11 10 9 14 14 H 1.07999 * 120.00803 * 118.54532 * 13 11 10 15 15 C 1.37881 * 119.99889 * 298.54353 * 13 11 10 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.48530 * 110.99463 * 47.52394 * 8 7 6 22 22 N 1.31851 * 120.75910 * 0.25052 * 6 5 4 23 23 C 1.31887 * 121.72837 * 359.48283 * 22 6 5 24 24 H 1.09004 * 109.47279 * 59.99565 * 1 2 3 25 25 H 1.09001 * 109.46848 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47107 * 299.99484 * 1 2 3 27 27 H 1.09006 * 109.46600 * 240.00073 * 2 1 3 28 28 H 1.08992 * 109.47049 * 120.00734 * 2 1 3 29 29 H 1.07993 * 120.79340 * 359.95929 * 4 3 2 30 30 H 1.07999 * 120.41876 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.46977 * 334.99884 * 7 6 5 32 32 H 1.08995 * 109.47718 * 214.99985 * 7 6 5 33 33 H 1.08994 * 109.92455 * 26.49033 * 9 8 7 34 34 H 1.09005 * 110.07966 * 265.28514 * 9 8 7 35 35 H 1.09002 * 110.30762 * 239.85912 * 10 9 8 36 36 H 1.09004 * 110.31479 * 117.68765 * 10 9 8 37 37 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.66521 * 81.84779 * 21 8 7 39 39 H 1.08995 * 110.66819 * 318.71147 * 21 8 7 40 40 H 1.07996 * 119.61617 * 180.27123 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2664 2.0826 1.1959 5 6 2.7288 3.3886 1.1477 6 6 2.9392 3.9837 -0.0821 7 6 3.4411 5.4031 -0.1466 8 7 4.9033 5.3996 -0.2881 9 6 5.5551 4.9376 0.9566 10 6 6.8185 4.1603 0.5432 11 6 6.8205 4.1858 -1.0026 12 1 7.4545 4.9908 -1.3742 13 6 7.2679 2.8580 -1.5573 14 1 6.5995 2.2786 -2.1769 15 6 8.5308 2.3826 -1.2737 16 7 8.9215 1.2240 -1.7582 17 14 9.6868 3.3842 -0.2014 18 1 9.4949 3.0055 1.2217 19 1 9.3931 4.8298 -0.3728 20 1 11.0913 3.1138 -0.6005 21 6 5.3332 4.4506 -1.3467 22 7 2.7006 3.3255 -1.1994 23 6 2.2652 2.0806 -1.1915 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.0924 1.5924 2.1423 30 1 2.9214 3.9346 2.0594 31 1 3.1659 5.9277 0.7684 32 1 2.9944 5.9080 -1.0031 33 1 4.8804 4.2832 1.5083 34 1 5.8306 5.7925 1.5743 35 1 6.7659 3.1333 0.9045 36 1 7.7100 4.6534 0.9308 37 1 9.8097 0.8894 -1.5584 38 1 5.2417 4.9067 -2.3325 39 1 4.7558 3.5276 -1.2935 40 1 2.0851 1.5723 -2.1272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397645951.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:41 Heat of formation + Delta-G solvation = 15.888969 kcal Electronic energy + Delta-G solvation = -19829.631478 eV Core-core repulsion = 17029.102987 eV Total energy + Delta-G solvation = -2800.528490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.64468 -39.55033 -36.03762 -34.97245 -33.44612 -32.80227 -30.62740 -29.92204 -27.59613 -25.79225 -24.67611 -24.02548 -22.15935 -21.59223 -21.30653 -18.79334 -17.64106 -17.51152 -17.03254 -16.46275 -16.23980 -15.81636 -15.24041 -14.94156 -14.73225 -14.61538 -14.39311 -14.20872 -13.83952 -13.56825 -13.14541 -13.06342 -12.93164 -12.56191 -12.39276 -12.23319 -12.18474 -11.88072 -11.76560 -11.69499 -11.35623 -11.08599 -10.75730 -10.60602 -10.41586 -9.75358 -9.30429 -8.32060 -6.36128 0.14199 0.37401 1.30227 1.34840 1.45979 2.32515 2.78123 3.02354 3.17396 3.45862 3.75380 3.82853 3.96633 3.98310 4.05290 4.11650 4.28011 4.35366 4.47124 4.50247 4.55999 4.62282 4.72560 4.80846 4.82221 4.90534 4.96415 5.03919 5.04008 5.05927 5.15383 5.21718 5.29567 5.34359 5.40194 5.57074 5.61651 5.81288 5.93127 6.13997 6.31672 6.68774 7.08310 7.29158 8.85019 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.006420 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.266103 B = 4360.517909 C = 5079.884529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C -0.136 4.136 4 C -0.081 4.081 5 C -0.163 4.163 6 C 0.072 3.928 7 C 0.095 3.905 8 N -0.508 5.508 9 C 0.038 3.962 10 C -0.137 4.137 11 C 0.007 3.993 12 H 0.029 0.971 13 C -0.513 4.513 14 H 0.023 0.977 15 C 0.014 3.986 16 N -0.951 5.951 17 Si 0.946 3.054 18 H -0.261 1.261 19 H -0.247 1.247 20 H -0.292 1.292 21 C 0.058 3.942 22 N -0.496 5.496 23 C 0.077 3.923 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.266 0.734 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.306 3.178 10.039 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 C -0.138 4.138 4 C -0.107 4.107 5 C -0.183 4.183 6 C -0.066 4.066 7 C -0.033 4.033 8 N -0.230 5.230 9 C -0.090 4.090 10 C -0.176 4.176 11 C -0.012 4.012 12 H 0.048 0.952 13 C -0.551 4.551 14 H 0.042 0.958 15 C -0.182 4.182 16 N -0.591 5.591 17 Si 0.771 3.229 18 H -0.186 1.186 19 H -0.171 1.171 20 H -0.219 1.219 21 C -0.070 4.070 22 N -0.205 5.205 23 C -0.080 4.080 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.178 0.822 30 H 0.175 0.825 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.883 4.062 9.110 18.755 hybrid contribution 0.533 -1.471 0.700 1.714 sum -15.351 2.591 9.809 18.400 Atomic orbital electron populations 1.21703 0.93176 1.02734 1.02018 1.20532 0.97201 0.90313 1.03755 1.21174 1.00010 0.98722 0.93896 1.21819 0.95656 0.94170 0.99050 1.22276 1.00353 0.96672 0.99019 1.22276 0.96202 0.99014 0.89118 1.21487 0.87544 0.89584 1.04719 1.65115 1.05914 1.46804 1.05163 1.22950 0.94723 0.98877 0.92423 1.22731 0.97939 0.98963 0.97923 1.19997 0.93914 0.94758 0.92545 0.95242 1.21156 0.99426 1.03771 1.30795 0.95825 1.25868 0.99510 0.95724 0.97144 1.70062 1.20355 1.21207 1.47478 0.85848 0.77036 0.80564 0.79485 1.18616 1.17052 1.21918 1.23114 0.95418 0.94077 0.94390 1.67546 1.10884 1.09878 1.32240 1.22897 0.95651 0.90699 0.98727 0.93085 0.90709 0.92309 0.90851 0.89826 0.82241 0.82513 0.86457 0.89467 0.92549 0.88388 0.93518 0.92385 0.92524 0.92483 0.93472 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.90 71.98 0.71 -1.44 16 2 C -0.08 -1.57 6.09 29.85 0.18 -1.38 16 3 C -0.14 -3.51 5.15 -19.77 -0.10 -3.61 16 4 C -0.08 -1.94 9.86 22.47 0.22 -1.71 16 5 C -0.16 -4.17 8.22 22.36 0.18 -3.98 16 6 C 0.07 2.24 4.64 42.55 0.20 2.44 16 7 C 0.10 2.72 5.84 85.55 0.50 3.22 16 8 N -0.51 -17.88 5.54 -887.58 -4.91 -22.80 16 9 C 0.04 1.25 6.46 86.45 0.56 1.81 16 10 C -0.14 -5.84 4.69 31.47 0.15 -5.69 16 11 C 0.01 0.37 2.46 -10.33 -0.03 0.34 16 12 H 0.03 1.50 7.36 -2.39 -0.02 1.48 16 13 C -0.51 -30.77 9.00 25.60 0.23 -30.54 16 14 H 0.02 1.59 8.03 -2.91 -0.02 1.56 16 15 C 0.01 0.86 5.46 84.65 0.46 1.33 16 16 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 17 Si 0.95 45.65 24.72 68.60 1.70 47.35 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.25 -11.19 6.38 99.48 0.63 -10.55 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 C 0.06 2.55 5.57 86.65 0.48 3.03 16 22 N -0.50 -17.41 8.37 -183.90 -1.54 -18.95 16 23 C 0.08 2.41 10.86 84.67 0.92 3.33 16 24 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 1.48 8.09 -2.38 -0.02 1.46 16 28 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 29 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.16 3.04 7.55 -2.91 -0.02 3.02 16 31 H 0.12 2.50 7.98 -2.38 -0.02 2.48 16 32 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.06 1.70 5.28 -2.39 -0.01 1.68 16 34 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.05 2.15 7.80 -2.39 -0.02 2.13 16 36 H 0.06 2.34 5.94 -2.39 -0.01 2.33 16 37 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 38 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.05 2.24 4.94 -2.39 -0.01 2.23 16 40 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -71.72 311.73 1.15 -70.57 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.94 Total: 17.34 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 4.67 Total: -32.87 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -6.15 Total: -102.39 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.70 Total: 47.35 kcal Total: -71.72 1.15 -70.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397645951.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.456 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds