Wall clock time and date at job start Mon Mar 30 2020 07:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38223 * 120.41942 * 2 1 4 4 N 1.31858 * 120.76589 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72239 * 359.97438 * 4 3 2 6 6 C 1.38173 * 120.76683 * 0.02562 * 5 4 3 7 7 C 1.38629 * 120.42290 * 180.02562 * 2 1 3 8 8 C 1.50702 * 120.78674 * 359.97438 * 7 2 1 9 9 C 1.53007 * 109.46960 * 84.97670 * 8 7 2 10 10 N 1.46904 * 109.46746 * 179.97438 * 9 8 7 11 11 C 1.46902 * 110.99530 * 169.99772 * 10 9 8 12 12 C 1.50693 * 109.47772 * 285.62092 * 11 10 9 13 13 H 1.08005 * 119.99952 * 4.84439 * 12 11 10 14 14 C 1.37875 * 120.00375 * 184.84943 * 12 11 10 15 15 N 1.31518 * 120.00162 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00091 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46912 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47196 * 120.00019 * 16 14 12 19 19 H 1.48499 * 109.46739 * 239.99813 * 16 14 12 20 20 C 1.46898 * 111.00330 * 293.95485 * 10 9 8 21 21 C 1.53004 * 117.49736 * 246.45303 * 20 10 9 22 22 C 1.52997 * 117.49906 * 177.83086 * 20 10 9 23 23 H 1.08999 * 109.46878 * 269.97790 * 1 2 3 24 24 H 1.09010 * 109.47068 * 29.97959 * 1 2 3 25 25 H 1.08998 * 109.47214 * 149.97782 * 1 2 3 26 26 H 1.08004 * 119.62141 * 0.04506 * 3 2 1 27 27 H 1.08005 * 119.61220 * 179.97438 * 5 4 3 28 28 H 1.08004 * 120.41771 * 179.97438 * 6 5 4 29 29 H 1.08993 * 109.47465 * 204.97744 * 8 7 2 30 30 H 1.08998 * 109.47314 * 324.97977 * 8 7 2 31 31 H 1.08994 * 109.47244 * 299.99771 * 9 8 7 32 32 H 1.08998 * 109.46856 * 60.00027 * 9 8 7 33 33 H 1.09000 * 109.47063 * 45.62181 * 11 10 9 34 34 H 1.09000 * 109.47245 * 165.61295 * 11 10 9 35 35 H 0.96998 * 120.00285 * 180.02562 * 15 14 12 36 36 H 1.08999 * 115.54777 * 32.15664 * 20 10 9 37 37 H 1.09000 * 117.49995 * 359.97438 * 21 20 10 38 38 H 1.08999 * 117.49818 * 145.02070 * 21 20 10 39 39 H 1.09000 * 117.49543 * 214.98336 * 22 20 10 40 40 H 1.08998 * 117.49670 * 359.96876 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 -0.0005 6 6 3.5948 -1.1470 -0.0005 7 6 2.2090 -1.1954 -0.0005 8 6 1.4832 -2.5161 -0.0005 9 6 1.1263 -2.9019 -1.4375 10 7 0.4194 -4.1897 -1.4375 11 6 -0.1463 -4.4796 -2.7619 12 6 -1.3573 -3.6127 -2.9918 13 1 -1.6295 -2.8615 -2.2650 14 6 -2.1179 -3.7784 -4.1298 15 7 -1.7862 -4.6928 -5.0150 16 14 -3.6195 -2.7043 -4.4143 17 1 -3.7756 -1.7609 -3.2782 18 1 -3.4483 -1.9379 -5.6747 19 1 -4.8284 -3.5606 -4.5159 20 6 1.3033 -5.2756 -0.9934 21 6 1.6769 -6.3470 -2.0199 22 6 0.7015 -6.6783 -0.8886 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6675 2.1277 0.0007 27 1 5.3047 0.1286 -0.0014 28 1 4.1738 -2.0588 -0.0010 29 1 2.1247 -3.2833 0.4329 30 1 0.5709 -2.4294 0.5895 31 1 0.4847 -2.1348 -1.8710 32 1 2.0386 -2.9887 -2.0276 33 1 0.5998 -4.2722 -3.5290 34 1 -0.4361 -5.5292 -2.8115 35 1 -2.3211 -4.8092 -5.8158 36 1 2.0591 -4.9961 -0.2594 37 1 1.2664 -6.2463 -3.0246 38 1 2.6787 -6.7724 -1.9613 39 1 1.0615 -7.3217 -0.0858 40 1 -0.3505 -6.7953 -1.1488 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397646600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:05 Heat of formation + Delta-G solvation = 38.647977 kcal Electronic energy + Delta-G solvation = -19358.195042 eV Core-core repulsion = 16558.653456 eV Total energy + Delta-G solvation = -2799.541585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28342 -39.74155 -36.25372 -35.18657 -33.99820 -33.15802 -30.58826 -28.45495 -27.88873 -25.00625 -24.34688 -23.37646 -23.13267 -22.08073 -20.40316 -18.74296 -17.66257 -17.46709 -16.98634 -16.63824 -16.10793 -15.86664 -15.34114 -15.00537 -14.62658 -14.37100 -14.17538 -13.85341 -13.67321 -13.54924 -13.27346 -13.01105 -12.80081 -12.65324 -12.55239 -12.42491 -12.30936 -12.04241 -11.88672 -11.48935 -11.12075 -11.08745 -10.62096 -10.36271 -10.31553 -9.77491 -8.85261 -8.20512 -6.30284 0.23299 0.32004 1.39394 1.40284 1.53278 2.38905 2.82364 2.93137 3.11775 3.33070 3.61927 3.82560 3.85279 4.02796 4.06192 4.09977 4.14077 4.21316 4.30893 4.43814 4.59663 4.62804 4.72629 4.80875 4.81136 4.85838 4.88053 5.04254 5.06089 5.10757 5.18734 5.25740 5.30488 5.34074 5.37290 5.55355 5.65846 5.85567 6.07220 6.35773 6.63279 6.85841 7.06007 7.39185 8.90143 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.006268 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.708174 B = 4466.045241 C = 5815.326106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.138 4.138 3 C 0.086 3.914 4 N -0.512 5.512 5 C 0.081 3.919 6 C -0.167 4.167 7 C -0.047 4.047 8 C -0.065 4.065 9 C 0.080 3.920 10 N -0.511 5.511 11 C 0.210 3.790 12 C -0.519 4.519 13 H 0.063 0.937 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.964 3.036 17 H -0.260 1.260 18 H -0.281 1.281 19 H -0.279 1.279 20 C 0.015 3.985 21 C -0.228 4.228 22 C -0.166 4.166 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.171 0.829 27 H 0.179 0.821 28 H 0.154 0.846 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.016 0.984 33 H -0.043 1.043 34 H 0.016 0.984 35 H 0.263 0.737 36 H 0.141 0.859 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 5.558 12.031 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.140 4.140 3 C -0.071 4.071 4 N -0.221 5.221 5 C -0.076 4.076 6 C -0.187 4.187 7 C -0.055 4.055 8 C -0.102 4.102 9 C -0.048 4.048 10 N -0.233 5.233 11 C 0.084 3.916 12 C -0.558 4.558 13 H 0.081 0.919 14 C -0.196 4.196 15 N -0.576 5.576 16 Si 0.789 3.211 17 H -0.184 1.184 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.094 4.094 21 C -0.267 4.267 22 C -0.204 4.204 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.188 0.812 27 H 0.196 0.804 28 H 0.171 0.829 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.034 0.966 33 H -0.025 1.025 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.115 6.348 12.203 16.501 hybrid contribution -0.689 -0.717 -1.471 1.776 sum 8.426 5.631 10.732 14.761 Atomic orbital electron populations 1.20825 0.89589 1.03547 1.03330 1.21038 0.98308 0.93754 1.00866 1.22945 0.89926 0.98097 0.96108 1.67672 1.08851 1.32396 1.13131 1.23126 1.01419 0.87400 0.95613 1.22305 0.94265 1.00595 1.01523 1.20371 0.94336 0.95247 0.95591 1.20547 1.00566 0.92822 0.96300 1.21814 0.95527 0.91591 0.95849 1.61915 1.31810 1.01239 1.28351 1.19421 0.92647 0.96085 0.83473 1.21521 1.10673 1.18676 1.04910 0.91890 1.25872 1.01050 0.96925 0.95732 1.70088 1.41088 1.35153 1.11273 0.85411 0.78766 0.78715 0.78254 1.18354 1.20661 1.20495 1.22945 0.98282 0.87313 1.00898 1.23492 1.00979 1.06962 0.95295 1.23019 0.97998 0.98473 1.00873 0.89520 0.90234 0.92076 0.81220 0.80441 0.82868 0.89215 0.89830 0.92241 0.96576 1.02501 0.96632 0.92802 0.84114 0.91639 0.86868 0.85674 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 9.30 71.24 0.66 -2.12 16 2 C -0.14 -3.55 5.90 -19.78 -0.12 -3.67 16 3 C 0.09 2.13 10.86 84.69 0.92 3.05 16 4 N -0.51 -13.46 10.36 -195.84 -2.03 -15.49 16 5 C 0.08 1.81 11.18 84.67 0.95 2.76 16 6 C -0.17 -3.78 9.80 22.36 0.22 -3.56 16 7 C -0.05 -1.22 5.17 -19.67 -0.10 -1.32 16 8 C -0.06 -1.78 4.68 29.85 0.14 -1.64 16 9 C 0.08 2.93 4.61 86.30 0.40 3.33 16 10 N -0.51 -21.24 4.65 -875.52 -4.07 -25.31 16 11 C 0.21 11.01 3.38 85.55 0.29 11.30 16 12 C -0.52 -29.17 8.58 25.60 0.22 -28.95 16 13 H 0.06 3.46 7.57 -2.91 -0.02 3.43 16 14 C 0.00 0.11 5.46 84.65 0.46 0.58 16 15 N -0.94 -56.39 13.29 21.45 0.28 -56.11 16 16 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 C 0.01 0.51 5.83 44.92 0.26 0.77 16 21 C -0.23 -7.90 9.56 30.60 0.29 -7.61 16 22 C -0.17 -5.42 9.91 30.59 0.30 -5.11 16 23 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.08 1.69 8.09 -2.38 -0.02 1.67 16 25 H 0.06 1.79 5.62 -2.39 -0.01 1.77 16 26 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 27 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 29 H 0.09 2.09 6.33 -2.39 -0.02 2.07 16 30 H 0.08 2.34 7.11 -2.39 -0.02 2.32 16 31 H 0.06 2.47 6.04 -2.39 -0.01 2.45 16 32 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 33 H -0.04 -2.47 7.82 -2.39 -0.02 -2.49 16 34 H 0.02 0.89 5.63 -2.39 -0.01 0.88 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.14 3.73 6.34 -2.39 -0.02 3.72 16 37 H 0.06 2.83 6.02 -2.39 -0.01 2.82 16 38 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.07 2.65 7.48 -2.39 -0.02 2.63 16 Total: -1.00 -66.59 322.46 2.13 -64.46 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 1.02 Total: 18.48 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 4.90 Total: -32.20 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -5.82 Total: -96.91 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.59 2.13 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397646600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.109 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds