Wall clock time and date at job start Mon Mar 30 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00216 * 2 1 4 4 C 1.53003 * 109.47207 * 359.97438 * 3 2 1 5 5 C 1.53004 * 109.47115 * 239.99706 * 3 2 1 6 6 C 1.52999 * 109.47477 * 119.99657 * 3 2 1 7 7 O 1.42902 * 109.47232 * 179.97438 * 6 3 2 8 8 C 1.42895 * 114.00255 * 179.97438 * 7 6 3 9 9 C 1.50696 * 109.47620 * 179.97438 * 8 7 6 10 10 C 1.38629 * 119.75027 * 269.73293 * 9 8 7 11 11 C 1.37616 * 120.24726 * 179.71859 * 10 9 8 12 12 C 1.40713 * 119.74816 * 0.56746 * 11 10 9 13 13 C 1.41394 * 120.25067 * 179.67957 * 12 11 10 14 14 H 1.07997 * 120.00652 * 204.40025 * 13 12 11 15 15 C 1.39949 * 119.99607 * 24.40527 * 13 12 11 16 16 N 1.30829 * 120.00062 * 17.85475 * 15 13 12 17 17 Si 1.86798 * 120.00043 * 197.85528 * 15 13 12 18 18 H 1.48500 * 109.46985 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47140 * 119.99988 * 17 15 13 20 20 H 1.48498 * 109.47251 * 239.99840 * 17 15 13 21 21 C 1.40718 * 119.50848 * 359.70557 * 12 11 10 22 22 C 1.37619 * 119.74534 * 0.02562 * 21 12 11 23 23 H 1.08006 * 120.00180 * 180.02562 * 1 2 3 24 24 H 1.08004 * 119.99792 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99792 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.47119 * 180.02562 * 4 3 2 27 27 H 1.09006 * 109.47097 * 300.00084 * 4 3 2 28 28 H 1.08996 * 109.46873 * 59.99951 * 4 3 2 29 29 H 1.09006 * 109.46936 * 299.99760 * 5 3 2 30 30 H 1.09001 * 109.47014 * 59.99165 * 5 3 2 31 31 H 1.08994 * 109.47249 * 179.97438 * 5 3 2 32 32 H 1.08992 * 109.47006 * 59.99784 * 6 3 2 33 33 H 1.09004 * 109.46683 * 299.99862 * 6 3 2 34 34 H 1.09005 * 109.46587 * 59.99815 * 8 7 6 35 35 H 1.09001 * 109.47372 * 300.00619 * 8 7 6 36 36 H 1.08005 * 119.87755 * 359.97064 * 10 9 8 37 37 H 1.08008 * 120.12622 * 180.27959 * 11 10 9 38 38 H 0.96994 * 119.99970 * 179.97438 * 16 15 13 39 39 H 1.07995 * 120.12697 * 179.97438 * 21 12 11 40 40 H 1.08000 * 119.87543 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3860 -1.2492 6 6 2.9431 1.3862 1.2492 7 8 3.6581 2.6234 1.2489 8 6 4.5135 2.8008 2.3797 9 6 5.2142 4.1309 2.2760 10 6 6.4393 4.2148 1.6325 11 6 7.0853 5.4252 1.5269 12 6 6.5035 6.5783 2.0854 13 6 7.1613 7.8262 1.9889 14 1 6.9555 8.6025 2.7110 15 6 8.0791 8.0555 0.9575 16 7 8.0806 7.2852 -0.1000 17 14 9.3019 9.4613 1.0908 18 1 9.0953 10.1769 2.3754 19 1 10.6843 8.9211 1.0424 20 1 9.0986 10.4030 -0.0393 21 6 5.2624 6.4802 2.7412 22 6 4.6316 5.2603 2.8300 23 1 -0.5401 -0.9353 0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.6143 3.4119 -0.0011 27 1 0.4430 2.4101 -0.8909 28 1 0.4424 2.4105 0.8891 29 1 3.6516 0.5575 -1.2491 30 1 2.3166 1.3281 -2.1392 31 1 3.4879 2.3301 -1.2495 32 1 3.6513 0.5577 1.2493 33 1 2.3163 1.3285 2.1392 34 1 5.2541 2.0013 2.4038 35 1 3.9191 2.7730 3.2929 36 1 6.8864 3.3275 1.2091 37 1 8.0376 5.4891 1.0212 38 1 8.7164 7.4443 -0.8150 39 1 4.8070 7.3587 3.1738 40 1 3.6788 5.1827 3.3325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398993800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:43 Heat of formation + Delta-G solvation = -25.919431 kcal Electronic energy + Delta-G solvation = -18789.463442 eV Core-core repulsion = 15954.829252 eV Total energy + Delta-G solvation = -2834.634189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.68686 -37.57055 -35.99309 -33.71498 -31.12721 -30.25275 -29.25377 -27.19783 -27.08088 -25.81251 -23.46842 -21.77220 -20.97858 -19.97660 -18.16619 -17.30014 -16.26086 -15.67846 -15.47003 -15.25529 -14.62931 -14.05416 -13.99917 -13.66604 -13.39105 -12.66660 -12.54647 -12.18400 -11.98829 -11.89646 -11.62557 -11.59261 -11.49804 -11.11362 -10.99315 -10.88454 -10.67472 -10.55491 -10.49582 -10.23973 -9.60249 -9.44052 -9.39409 -9.17219 -9.04825 -7.45282 -7.33325 -6.77254 -4.36566 2.17233 2.70009 3.06655 3.09941 3.11582 3.14569 3.92204 4.21991 4.66679 4.83961 4.88738 5.13162 5.27492 5.34860 5.62045 5.66553 5.73368 5.74746 5.82942 5.86875 5.90530 6.04498 6.06718 6.14582 6.20022 6.38616 6.40836 6.41816 6.45728 6.61337 6.73111 6.95854 7.06803 7.29318 7.37429 7.61899 7.72801 7.89513 8.05421 8.13517 8.29644 8.64021 8.88682 8.97396 10.16884 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.038007 B = 0.003699 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.531116 B = 7568.717229 C = 7787.743257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C -0.036 4.036 4 C -0.140 4.140 5 C -0.133 4.133 6 C 0.073 3.927 7 O -0.376 6.376 8 C 0.129 3.871 9 C -0.222 4.222 10 C -0.080 4.080 11 C -0.170 4.170 12 C 0.115 3.885 13 C -0.461 4.461 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.789 5.789 17 Si 0.908 3.092 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.274 1.274 21 C -0.230 4.230 22 C -0.070 4.070 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.280 0.720 39 H 0.092 0.908 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.184 -10.419 -0.322 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.159 4.159 3 C -0.036 4.036 4 C -0.197 4.197 5 C -0.191 4.191 6 C -0.004 4.004 7 O -0.296 6.296 8 C 0.054 3.946 9 C -0.223 4.223 10 C -0.099 4.099 11 C -0.189 4.189 12 C 0.113 3.887 13 C -0.490 4.490 14 H 0.097 0.903 15 C -0.143 4.143 16 N -0.414 5.414 17 Si 0.732 3.268 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.200 1.200 21 C -0.249 4.249 22 C -0.088 4.088 23 H 0.112 0.888 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.083 -10.299 -0.698 13.111 hybrid contribution 0.547 0.294 0.115 0.632 sum -7.536 -10.005 -0.583 12.540 Atomic orbital electron populations 1.24000 0.96114 1.02019 1.01376 1.22891 0.95892 0.97558 0.99525 1.19657 0.95174 0.93195 0.95620 1.21873 0.98305 0.98665 1.00843 1.21738 0.98838 1.03025 0.95466 1.22331 0.93903 0.87799 0.96343 1.88076 1.59437 1.36316 1.45732 1.21084 0.90812 0.95685 0.87047 1.18762 0.98223 0.93178 1.12147 1.20521 0.94817 0.96767 0.97767 1.21287 1.01097 0.91141 1.05361 1.17653 0.89615 0.93020 0.88460 1.19656 1.19705 0.99291 1.10340 0.90344 1.25940 0.96894 0.97396 0.94060 1.69847 1.30997 1.35795 1.04754 0.86273 0.80205 0.80870 0.79452 1.18377 1.19686 1.19972 1.20955 0.97481 0.95819 1.10684 1.20365 0.97099 0.92770 0.98558 0.88779 0.87744 0.87552 0.90972 0.92876 0.92860 0.93001 0.93078 0.90858 0.94034 0.94069 0.94520 0.94591 0.89538 0.86410 0.90870 0.88973 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 13.70 29.01 0.40 -1.50 16 2 C -0.14 -1.50 8.76 -36.03 -0.32 -1.82 16 3 C -0.04 -0.46 0.82 -155.66 -0.13 -0.59 16 4 C -0.14 -1.80 6.98 37.16 0.26 -1.54 16 5 C -0.13 -1.75 8.31 37.16 0.31 -1.44 16 6 C 0.07 1.05 4.79 37.16 0.18 1.23 16 7 O -0.38 -6.91 8.98 -35.23 -0.32 -7.23 16 8 C 0.13 2.41 6.05 36.00 0.22 2.63 16 9 C -0.22 -5.02 5.53 -104.33 -0.58 -5.60 16 10 C -0.08 -1.92 9.67 -39.66 -0.38 -2.31 16 11 C -0.17 -4.47 8.70 -38.87 -0.34 -4.81 16 12 C 0.12 3.11 5.57 -106.82 -0.60 2.51 16 13 C -0.46 -12.31 9.05 -37.74 -0.34 -12.65 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 15 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 16 N -0.79 -20.53 10.95 55.55 0.61 -19.92 16 17 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16 22 C -0.07 -1.61 9.67 -39.66 -0.38 -1.99 16 23 H 0.09 0.75 8.06 -52.48 -0.42 0.33 16 24 H 0.10 0.99 5.69 -52.48 -0.30 0.69 16 25 H 0.11 1.02 8.06 -52.48 -0.42 0.59 16 26 H 0.07 1.09 7.68 -51.93 -0.40 0.70 16 27 H 0.05 0.60 7.50 -51.93 -0.39 0.21 16 28 H 0.05 0.64 7.50 -51.93 -0.39 0.25 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.12 3.19 6.16 -52.48 -0.32 2.87 16 38 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -27.68 330.82 -8.32 -35.99 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.39 Total: 4.78 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: -2.17 Total: -32.21 kcal Atomic # 7 Polarization: -20.53 SS G_CDS: 0.61 Total: -19.92 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.32 Total: -7.23 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.68 -8.32 -35.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398993800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.075 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds