Wall clock time and date at job start Mon Mar 30 2020 06:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48500 * 109.47141 * 270.00213 * 3 2 1 5 5 H 1.48498 * 109.46983 * 29.99912 * 3 2 1 6 6 H 1.48491 * 109.47183 * 150.00074 * 3 2 1 7 7 C 1.39944 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00266 * 197.85898 * 7 2 1 9 9 C 1.41402 * 120.00026 * 17.85336 * 7 2 1 10 10 C 1.40717 * 120.23906 * 24.39249 * 9 7 2 11 11 C 1.37623 * 119.74059 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24717 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74770 * 179.97438 * 12 11 10 14 14 N 1.46896 * 109.46899 * 90.00161 * 13 12 11 15 15 N 1.45400 * 110.99891 * 180.02562 * 14 13 12 16 16 C 1.46848 * 110.99736 * 244.20774 * 15 14 13 17 17 C 1.53038 * 109.52544 * 174.15808 * 16 15 14 18 18 C 1.53116 * 109.27504 * 59.17805 * 17 16 15 19 19 C 1.53115 * 109.16338 * 302.34785 * 18 17 16 20 20 C 1.46844 * 111.00389 * 119.99981 * 15 14 13 21 21 C 1.38634 * 120.50482 * 0.25061 * 12 11 10 22 22 C 1.37620 * 120.24462 * 359.45131 * 21 12 11 23 23 H 0.96998 * 120.00127 * 359.97438 * 1 2 3 24 24 H 1.07995 * 120.12979 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.87157 * 179.97438 * 11 10 9 26 26 H 1.09001 * 109.47070 * 330.00257 * 13 12 11 27 27 H 1.08996 * 109.46783 * 210.00153 * 13 12 11 28 28 H 1.00901 * 110.99889 * 303.95017 * 14 13 12 29 29 H 1.09001 * 109.46401 * 294.17647 * 16 15 14 30 30 H 1.09004 * 109.46093 * 54.13919 * 16 15 14 31 31 H 1.08999 * 109.50310 * 299.23891 * 17 16 15 32 32 H 1.08994 * 109.50556 * 179.12264 * 17 16 15 33 33 H 1.08999 * 109.52295 * 182.43995 * 18 17 16 34 34 H 1.09003 * 109.52594 * 62.25431 * 18 17 16 35 35 H 1.09003 * 109.50249 * 297.71256 * 19 18 17 36 36 H 1.09004 * 109.50669 * 177.59752 * 19 18 17 37 37 H 1.09002 * 109.46101 * 305.85319 * 20 15 14 38 38 H 1.09001 * 109.46732 * 65.82172 * 20 15 14 39 39 H 1.07998 * 119.87665 * 179.70116 * 21 12 11 40 40 H 1.08004 * 120.12692 * 180.27812 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5397 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3520 -2.4072 -0.3744 10 6 0.2208 -2.3626 -1.2101 11 6 -0.4100 -3.5322 -1.5682 12 6 0.0647 -4.7508 -1.1083 13 6 -0.6351 -6.0246 -1.5069 14 7 -0.0442 -6.5397 -2.7492 15 7 -0.6966 -7.7707 -3.1652 16 6 0.2412 -8.9003 -3.1323 17 6 -0.5111 -10.1986 -3.4336 18 6 -1.1659 -10.0946 -4.8138 19 6 -2.1007 -8.8822 -4.8366 20 6 -1.3023 -7.6222 -4.4946 21 6 1.1749 -4.8062 -0.2798 22 6 1.8251 -3.6498 0.0861 23 1 -0.4850 0.8400 0.0004 24 1 -0.1514 -1.4143 -1.5685 25 1 -1.2786 -3.5004 -2.2092 26 1 -1.6946 -5.8230 -1.6648 27 1 -0.5202 -6.7652 -0.7155 28 1 -0.0804 -5.8464 -3.4814 29 1 1.0186 -8.7489 -3.8811 30 1 0.6967 -8.9655 -2.1441 31 1 -1.2796 -10.3577 -2.6772 32 1 0.1879 -11.0348 -3.4244 33 1 -1.7387 -11.0001 -5.0143 34 1 -0.3948 -9.9744 -5.5747 35 1 -2.8943 -9.0207 -4.1023 36 1 -2.5373 -8.7779 -5.8299 37 1 -1.9679 -6.7590 -4.4960 38 1 -0.5177 -7.4767 -5.2371 39 1 1.5332 -5.7606 0.0765 40 1 2.6925 -3.6955 0.7280 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399012693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:12 Heat of formation + Delta-G solvation = 31.360518 kcal Electronic energy + Delta-G solvation = -18779.548492 eV Core-core repulsion = 15979.690899 eV Total energy + Delta-G solvation = -2799.857593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.70188 -37.58862 -34.82250 -33.52419 -31.19594 -30.86915 -29.29078 -28.80859 -25.91982 -23.57101 -23.10545 -22.21381 -20.96447 -19.89348 -19.62298 -17.28131 -16.60561 -15.43192 -15.09819 -14.67267 -14.61350 -14.07633 -13.94169 -13.80185 -13.40995 -13.18309 -12.97174 -12.45507 -12.27062 -11.92577 -11.88377 -11.44130 -11.27471 -11.08243 -11.05723 -10.87509 -10.65695 -10.57321 -10.48036 -10.28120 -9.54755 -9.39523 -9.12892 -9.02394 -7.77543 -7.42989 -7.27937 -6.76160 -4.34490 2.71139 3.06635 3.10408 3.10767 3.13737 3.63292 3.93137 4.59639 4.67594 4.76617 4.83782 5.15124 5.25260 5.32620 5.47874 5.56712 5.67954 5.73743 5.79339 5.83309 5.90002 6.00682 6.04180 6.06821 6.22325 6.26180 6.40569 6.44229 6.50379 6.96348 7.00484 7.08396 7.28254 7.38523 7.44819 7.63350 7.86677 7.99229 8.06778 8.16715 8.31682 8.65104 8.90473 8.98991 10.18372 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.050301 B = 0.003462 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.514327 B = 8085.959080 C = 8348.715407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.167 4.167 11 C -0.094 4.094 12 C -0.216 4.216 13 C 0.138 3.862 14 N -0.525 5.525 15 N -0.388 5.388 16 C 0.070 3.930 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.113 4.113 20 C 0.032 3.968 21 C -0.067 4.067 22 C -0.229 4.229 23 H 0.280 0.720 24 H 0.117 0.883 25 H 0.083 0.917 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.331 0.669 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.088 0.912 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 -12.632 -7.663 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.111 3.889 10 C -0.186 4.186 11 C -0.113 4.113 12 C -0.219 4.219 13 C 0.010 3.990 14 N -0.247 5.247 15 N -0.202 5.202 16 C -0.058 4.058 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.151 4.151 20 C -0.097 4.097 21 C -0.086 4.086 22 C -0.248 4.248 23 H 0.091 0.909 24 H 0.135 0.865 25 H 0.101 0.899 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.106 0.894 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.020 -12.901 -6.980 14.976 hybrid contribution 0.097 1.426 -0.930 1.705 sum -2.924 -11.475 -7.910 14.240 Atomic orbital electron populations 1.69831 1.07588 1.29171 1.35226 1.25915 0.94714 1.01311 0.92241 0.86319 0.80522 0.80618 0.79304 1.19295 1.20341 1.18611 1.19620 0.98176 0.91312 1.40128 0.90440 1.17633 0.91009 0.92031 0.88265 1.21278 0.99396 0.96644 1.01303 1.20536 0.98305 0.92922 0.99511 1.18905 1.01974 0.92251 1.08728 1.20469 0.94593 0.93858 0.90065 1.64127 1.51919 1.02373 1.06238 1.65079 1.29783 1.00496 1.24891 1.21965 0.93384 0.88940 1.01553 1.21629 1.00008 0.96773 0.97177 1.21590 0.98822 0.98027 0.97505 1.21551 0.98312 0.93997 1.01280 1.22493 0.97954 0.98720 0.90516 1.20350 0.94765 0.96303 0.97139 1.20976 1.03750 0.92970 1.07142 0.90903 0.86545 0.89927 0.95827 0.91690 0.85142 0.94936 0.90421 0.91204 0.91473 0.91936 0.92314 0.91114 0.91644 0.91037 0.94550 0.89405 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.57 10.95 55.55 0.61 -19.96 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.37 9.05 -37.74 -0.34 -12.71 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.11 3.04 5.58 -106.82 -0.60 2.44 16 10 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 11 C -0.09 -2.18 9.67 -39.66 -0.38 -2.56 16 12 C -0.22 -4.73 5.41 -104.33 -0.56 -5.29 16 13 C 0.14 2.57 6.25 -4.97 -0.03 2.54 16 14 N -0.53 -8.88 6.75 -11.41 -0.08 -8.95 16 15 N -0.39 -5.59 4.78 -113.82 -0.54 -6.13 16 16 C 0.07 0.90 5.90 -3.83 -0.02 0.88 16 17 C -0.12 -1.18 6.09 -26.65 -0.16 -1.34 16 18 C -0.12 -1.11 6.00 -26.61 -0.16 -1.27 16 19 C -0.11 -1.11 6.09 -26.65 -0.16 -1.28 16 20 C 0.03 0.40 5.40 -3.84 -0.02 0.37 16 21 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 22 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 23 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 24 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 25 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 26 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.06 1.20 8.08 -51.93 -0.42 0.79 16 28 H 0.33 5.58 8.11 -174.65 -1.42 4.16 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -27.04 324.38 -11.42 -38.46 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.62 Total: 7.06 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -3.64 Total: -29.05 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.01 Total: -35.04 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.04 -11.42 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399012693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.820 kcal (2) G-P(sol) polarization free energy of solvation -27.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds