Wall clock time and date at job start Mon Mar 30 2020 06:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48500 * 109.47141 * 270.00213 * 3 2 1 5 5 H 1.48498 * 109.46983 * 29.99912 * 3 2 1 6 6 H 1.48491 * 109.47183 * 150.00074 * 3 2 1 7 7 C 1.39944 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00266 * 197.85898 * 7 2 1 9 9 C 1.41402 * 120.00026 * 17.85336 * 7 2 1 10 10 C 1.40717 * 120.23906 * 24.39249 * 9 7 2 11 11 C 1.37623 * 119.74059 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24717 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74770 * 179.97438 * 12 11 10 14 14 N 1.46896 * 109.46899 * 90.00161 * 13 12 11 15 15 N 1.45400 * 110.99891 * 180.02562 * 14 13 12 16 16 C 1.46848 * 110.99736 * 244.20774 * 15 14 13 17 17 C 1.53038 * 109.52544 * 174.15808 * 16 15 14 18 18 C 1.53116 * 109.27504 * 59.17805 * 17 16 15 19 19 C 1.53115 * 109.16338 * 302.34785 * 18 17 16 20 20 C 1.46844 * 111.00389 * 119.99981 * 15 14 13 21 21 C 1.38634 * 120.50482 * 0.25061 * 12 11 10 22 22 C 1.37620 * 120.24462 * 359.45131 * 21 12 11 23 23 H 0.96998 * 120.00127 * 359.97438 * 1 2 3 24 24 H 1.07995 * 120.12979 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.87157 * 179.97438 * 11 10 9 26 26 H 1.09001 * 109.47070 * 330.00257 * 13 12 11 27 27 H 1.08996 * 109.46783 * 210.00153 * 13 12 11 28 28 H 1.00901 * 110.99889 * 303.95017 * 14 13 12 29 29 H 1.09001 * 109.46401 * 294.17647 * 16 15 14 30 30 H 1.09004 * 109.46093 * 54.13919 * 16 15 14 31 31 H 1.08999 * 109.50310 * 299.23891 * 17 16 15 32 32 H 1.08994 * 109.50556 * 179.12264 * 17 16 15 33 33 H 1.08999 * 109.52295 * 182.43995 * 18 17 16 34 34 H 1.09003 * 109.52594 * 62.25431 * 18 17 16 35 35 H 1.09003 * 109.50249 * 297.71256 * 19 18 17 36 36 H 1.09004 * 109.50669 * 177.59752 * 19 18 17 37 37 H 1.09002 * 109.46101 * 305.85319 * 20 15 14 38 38 H 1.09001 * 109.46732 * 65.82172 * 20 15 14 39 39 H 1.07998 * 119.87665 * 179.70116 * 21 12 11 40 40 H 1.08004 * 120.12692 * 180.27812 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5397 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3520 -2.4072 -0.3744 10 6 0.2208 -2.3626 -1.2101 11 6 -0.4100 -3.5322 -1.5682 12 6 0.0647 -4.7508 -1.1083 13 6 -0.6351 -6.0246 -1.5069 14 7 -0.0442 -6.5397 -2.7492 15 7 -0.6966 -7.7707 -3.1652 16 6 0.2412 -8.9003 -3.1323 17 6 -0.5111 -10.1986 -3.4336 18 6 -1.1659 -10.0946 -4.8138 19 6 -2.1007 -8.8822 -4.8366 20 6 -1.3023 -7.6222 -4.4946 21 6 1.1749 -4.8062 -0.2798 22 6 1.8251 -3.6498 0.0861 23 1 -0.4850 0.8400 0.0004 24 1 -0.1514 -1.4143 -1.5685 25 1 -1.2786 -3.5004 -2.2092 26 1 -1.6946 -5.8230 -1.6648 27 1 -0.5202 -6.7652 -0.7155 28 1 -0.0804 -5.8464 -3.4814 29 1 1.0186 -8.7489 -3.8811 30 1 0.6967 -8.9655 -2.1441 31 1 -1.2796 -10.3577 -2.6772 32 1 0.1879 -11.0348 -3.4244 33 1 -1.7387 -11.0001 -5.0143 34 1 -0.3948 -9.9744 -5.5747 35 1 -2.8943 -9.0207 -4.1023 36 1 -2.5373 -8.7779 -5.8299 37 1 -1.9679 -6.7590 -4.4960 38 1 -0.5177 -7.4767 -5.2371 39 1 1.5332 -5.7606 0.0765 40 1 2.6925 -3.6955 0.7280 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399012693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:11 Heat of formation + Delta-G solvation = 17.651248 kcal Electronic energy + Delta-G solvation = -18780.142971 eV Core-core repulsion = 15979.690899 eV Total energy + Delta-G solvation = -2800.452072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.84773 -39.29220 -36.30865 -35.13511 -32.70377 -31.76238 -31.17786 -30.38556 -27.57969 -25.01642 -24.03135 -23.45239 -22.87197 -21.60177 -20.59928 -19.21803 -17.78770 -17.17112 -16.38660 -16.08193 -15.63094 -15.56253 -15.47304 -15.17821 -14.64733 -14.40228 -14.08237 -14.04626 -13.80281 -13.59798 -13.15404 -13.10766 -12.84142 -12.72277 -12.38047 -12.14765 -12.11121 -11.65873 -11.52947 -11.37985 -11.29304 -11.24474 -11.00955 -10.26411 -9.37909 -9.25029 -8.93748 -8.64210 -6.33698 0.91455 1.15929 1.37805 1.49991 1.51128 2.20624 2.35715 2.77506 3.69108 3.79174 3.93745 4.05137 4.16535 4.29206 4.37218 4.40058 4.43040 4.58699 4.62328 4.65641 4.71437 4.84001 4.93749 4.98158 5.00762 5.04988 5.16581 5.18688 5.21210 5.29618 5.37848 5.46946 5.47869 5.71085 5.86370 5.97278 6.10662 6.13912 6.27739 6.39575 6.70122 6.72411 6.94392 7.04070 8.32799 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.050301 B = 0.003462 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.514327 B = 8085.959080 C = 8348.715407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.190 4.190 11 C -0.095 4.095 12 C -0.203 4.203 13 C 0.151 3.849 14 N -0.534 5.534 15 N -0.392 5.392 16 C 0.067 3.933 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.108 4.108 20 C 0.030 3.970 21 C -0.070 4.070 22 C -0.245 4.245 23 H 0.288 0.712 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.330 0.670 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.112 0.888 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 -14.012 -8.602 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.531 4.531 8 H 0.092 0.908 9 C 0.079 3.921 10 C -0.209 4.209 11 C -0.114 4.114 12 C -0.206 4.206 13 C 0.022 3.978 14 N -0.254 5.254 15 N -0.208 5.208 16 C -0.061 4.061 17 C -0.150 4.150 18 C -0.157 4.157 19 C -0.147 4.147 20 C -0.099 4.099 21 C -0.088 4.088 22 C -0.264 4.264 23 H 0.099 0.901 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.130 0.870 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.429 -14.301 -7.922 16.704 hybrid contribution 0.166 1.676 -0.683 1.818 sum -3.263 -12.625 -8.605 15.623 Atomic orbital electron populations 1.69878 1.09002 1.30536 1.35675 1.26762 0.95500 1.04516 0.91188 0.85196 0.79065 0.75881 0.79511 1.18689 1.19156 1.18263 1.19854 0.98361 0.92632 1.42281 0.90793 1.17975 0.91905 0.93033 0.89192 1.21249 1.00231 0.97004 1.02449 1.20763 0.98611 0.92623 0.99414 1.19258 1.01040 0.93315 1.06942 1.20254 0.94182 0.92200 0.91126 1.63981 1.52348 1.03320 1.05796 1.65098 1.29861 0.99346 1.26460 1.22056 0.93541 0.89717 1.00772 1.21614 1.00076 0.95543 0.97761 1.21599 0.98860 0.98454 0.96798 1.21556 0.97995 0.93006 1.02158 1.22589 0.97976 1.00054 0.89276 1.20638 0.94716 0.96624 0.96859 1.21171 1.04362 0.93261 1.07615 0.90134 0.88191 0.87927 0.95549 0.91314 0.85280 0.95447 0.91626 0.91456 0.89682 0.89946 0.92074 0.91452 0.89797 0.91493 0.94603 0.87017 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.85 10.95 21.83 0.24 -43.61 16 2 C 0.04 1.81 5.14 85.26 0.44 2.24 16 3 Si 0.98 38.80 29.60 68.60 2.03 40.83 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.50 -27.75 9.05 23.46 0.21 -27.54 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.08 4.51 5.58 -21.29 -0.12 4.39 16 10 C -0.19 -10.18 8.70 22.73 0.20 -9.98 16 11 C -0.10 -4.44 9.67 22.22 0.21 -4.23 16 12 C -0.20 -8.75 5.41 -19.67 -0.11 -8.85 16 13 C 0.15 5.38 6.25 85.56 0.54 5.91 16 14 N -0.53 -17.34 6.75 -190.01 -1.28 -18.62 16 15 N -0.39 -10.65 4.78 -514.01 -2.46 -13.10 16 16 C 0.07 1.62 5.90 86.33 0.51 2.13 16 17 C -0.11 -1.94 6.09 30.65 0.19 -1.75 16 18 C -0.12 -1.80 6.00 30.67 0.18 -1.61 16 19 C -0.11 -1.84 6.09 30.64 0.19 -1.66 16 20 C 0.03 0.68 5.40 86.33 0.47 1.14 16 21 C -0.07 -3.14 9.67 22.22 0.21 -2.93 16 22 C -0.24 -12.40 9.80 22.73 0.22 -12.18 16 23 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 24 H 0.10 5.60 6.15 -2.91 -0.02 5.59 16 25 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 26 H 0.03 0.93 8.08 -2.39 -0.02 0.91 16 27 H 0.07 2.42 8.08 -2.39 -0.02 2.40 16 28 H 0.33 10.78 8.11 -204.85 -1.66 9.11 16 29 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -59.01 324.38 1.22 -57.79 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.65 Total: 31.63 kcal Atomic # 6 Polarization: -58.26 SS G_CDS: 3.34 Total: -54.91 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -3.50 Total: -75.33 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -59.01 1.22 -57.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399012693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.440 kcal (2) G-P(sol) polarization free energy of solvation -59.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds