Wall clock time and date at job start Mon Mar 30 2020 06:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 119.62269 * 2 1 4 4 C 1.38623 * 119.16397 * 180.02562 * 3 2 1 5 5 C 1.38678 * 118.41973 * 359.74927 * 4 3 2 6 6 C 1.38176 * 119.16146 * 0.48897 * 5 4 3 7 7 C 1.50701 * 119.61592 * 179.77449 * 6 5 4 8 8 C 1.52998 * 109.47402 * 124.72985 * 7 6 5 9 9 N 1.46900 * 109.47529 * 180.02562 * 8 7 6 10 10 C 1.46902 * 111.00095 * 190.00034 * 9 8 7 11 11 C 1.50694 * 109.46971 * 161.83393 * 10 9 8 12 12 H 1.08000 * 119.99992 * 354.36602 * 11 10 9 13 13 C 1.37881 * 119.99815 * 174.36420 * 11 10 9 14 14 N 1.31511 * 119.99945 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99916 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47092 * 60.00180 * 15 13 11 17 17 H 1.48505 * 109.47070 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47137 * 300.00067 * 15 13 11 19 19 C 1.46904 * 110.99870 * 66.04547 * 9 8 7 20 20 C 1.53001 * 117.49564 * 261.91117 * 19 9 8 21 21 C 1.52994 * 117.49700 * 193.25078 * 19 9 8 22 22 N 1.31856 * 119.61811 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47213 * 269.98054 * 1 2 3 24 24 H 1.09003 * 109.46667 * 29.97881 * 1 2 3 25 25 H 1.09000 * 109.47040 * 149.97918 * 1 2 3 26 26 H 1.08002 * 120.41153 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.78885 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.41521 * 180.24858 * 5 4 3 29 29 H 1.08998 * 109.47289 * 244.72697 * 7 6 5 30 30 H 1.08994 * 109.47055 * 4.72911 * 7 6 5 31 31 H 1.09002 * 109.47107 * 300.00293 * 8 7 6 32 32 H 1.09002 * 109.47233 * 59.99340 * 8 7 6 33 33 H 1.09004 * 109.46480 * 281.83643 * 10 9 8 34 34 H 1.09002 * 109.46946 * 41.82977 * 10 9 8 35 35 H 0.97000 * 119.99798 * 180.02562 * 14 13 11 36 36 H 1.08997 * 115.54675 * 47.57907 * 19 9 8 37 37 H 1.08995 * 117.50058 * 0.02562 * 20 19 9 38 38 H 1.09001 * 117.49292 * 145.02197 * 20 19 9 39 39 H 1.08992 * 117.49958 * 214.97545 * 21 19 9 40 40 H 1.08999 * 117.50264 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0343 0.0043 6 6 3.4766 -1.1948 -0.0009 7 6 4.1726 -2.5314 -0.0009 8 6 3.6748 -3.3657 1.1811 9 7 4.3537 -4.6684 1.1814 10 6 3.7372 -5.5831 2.1516 11 6 4.1344 -7.0004 1.8283 12 1 4.7043 -7.2112 0.9354 13 6 3.7702 -8.0280 2.6724 14 7 3.0759 -7.7713 3.7594 15 14 4.2632 -9.7848 2.2721 16 1 5.7436 -9.8810 2.2076 17 1 3.7530 -10.6951 3.3287 18 1 3.6843 -10.1749 0.9614 19 6 5.7908 -4.5131 1.4440 20 6 6.7327 -4.5090 0.2383 21 6 6.6925 -5.7193 1.1746 22 7 2.1586 -1.1463 -0.0005 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6508 2.1373 -0.0004 27 1 4.1367 2.1139 -0.0001 28 1 5.3056 -0.0806 0.0080 29 1 3.9549 -3.0545 -0.9320 30 1 5.2484 -2.3808 0.0882 31 1 3.8925 -2.8427 2.1123 32 1 2.5989 -3.5163 1.0920 33 1 4.0773 -5.3305 3.1559 34 1 2.6524 -5.4892 2.1009 35 1 2.8200 -8.4942 4.3534 36 1 6.0480 -3.8703 2.2858 37 1 6.2862 -4.6212 -0.7496 38 1 7.6099 -3.8639 0.2872 39 1 7.5433 -5.8699 1.8390 40 1 6.2195 -6.6283 0.8031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399744549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:05 Heat of formation + Delta-G solvation = 59.152360 kcal Electronic energy + Delta-G solvation = -19003.452874 eV Core-core repulsion = 16204.800425 eV Total energy + Delta-G solvation = -2798.652449 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27986 -37.74130 -34.38687 -33.27998 -32.78452 -32.07031 -29.62831 -27.53015 -26.17372 -23.40642 -22.24380 -22.02321 -21.54968 -21.02213 -19.31927 -16.54540 -16.39759 -16.23927 -15.24087 -14.90540 -14.70658 -14.50165 -14.36592 -13.65181 -13.25202 -12.97636 -12.66201 -12.62253 -12.33111 -12.22121 -11.93797 -11.58098 -11.50999 -11.06454 -10.86273 -10.72778 -10.68394 -10.45552 -9.89865 -9.77451 -9.49988 -9.30112 -9.06627 -9.04208 -8.71667 -8.33565 -7.22806 -5.94822 -3.94591 1.12278 1.30186 3.37419 3.41467 3.44039 3.78212 4.24263 4.45560 4.61981 4.67389 4.68615 5.00904 5.03269 5.12692 5.39706 5.45529 5.49900 5.54396 5.60513 5.67478 5.71108 5.74184 5.80971 5.98013 6.08803 6.13802 6.16138 6.21965 6.25967 6.40103 6.55752 6.65778 6.75929 6.78428 7.06725 7.31833 7.46093 7.92321 8.12495 8.19251 8.28431 8.62210 9.11274 9.67645 11.15956 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.004458 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.177477 B = 6279.786089 C = 7080.470258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.130 3.870 3 C -0.188 4.188 4 C -0.072 4.072 5 C -0.181 4.181 6 C 0.149 3.851 7 C -0.065 4.065 8 C 0.073 3.927 9 N -0.511 5.511 10 C 0.196 3.804 11 C -0.498 4.498 12 H 0.068 0.932 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.025 3.975 20 C -0.188 4.188 21 C -0.156 4.156 22 N -0.478 5.478 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.017 0.983 32 H 0.079 0.921 33 H -0.004 1.004 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 17.191 -7.309 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.008 4.008 3 C -0.208 4.208 4 C -0.098 4.098 5 C -0.201 4.201 6 C 0.011 3.989 7 C -0.103 4.103 8 C -0.056 4.056 9 N -0.236 5.236 10 C 0.072 3.928 11 C -0.536 4.536 12 H 0.086 0.914 13 C -0.147 4.147 14 N -0.541 5.541 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.084 4.084 20 C -0.226 4.226 21 C -0.193 4.193 22 N -0.188 5.188 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.014 0.986 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.696 16.104 -7.602 17.821 hybrid contribution 0.832 0.317 0.840 1.224 sum 1.528 16.420 -6.762 17.824 Atomic orbital electron populations 1.20716 0.89019 1.03307 1.03121 1.21332 0.97018 0.88327 0.94108 1.21875 0.94976 0.99100 1.04882 1.21528 0.94471 0.98127 0.95709 1.21992 1.01344 0.92938 1.03852 1.21479 0.89226 0.95877 0.92307 1.20613 0.98636 0.89839 1.01250 1.21874 0.99465 0.89854 0.94440 1.61914 0.99760 1.08968 1.52917 1.19696 0.94113 0.90631 0.88380 1.21217 1.33902 0.90789 1.07726 0.91403 1.24980 0.95544 0.99064 0.95117 1.69952 1.38767 1.32358 1.13033 0.86628 0.78818 0.84469 0.77906 1.20249 1.21483 1.20235 1.22068 0.88046 1.01819 0.96488 1.23055 1.00651 1.02844 0.96020 1.23147 1.00163 0.94480 1.01499 1.67397 1.09639 1.29133 1.12635 0.90404 0.91001 0.90290 0.85249 0.85149 0.84951 0.89361 0.90294 0.96487 0.90281 0.98596 0.95653 0.93022 0.91561 0.88962 0.90363 0.90314 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.17 36.00 0.37 -0.66 16 2 C 0.13 1.68 6.78 -82.59 -0.56 1.12 16 3 C -0.19 -2.02 9.74 -39.44 -0.38 -2.41 16 4 C -0.07 -0.76 10.18 -39.28 -0.40 -1.16 16 5 C -0.18 -2.21 9.71 -39.44 -0.38 -2.60 16 6 C 0.15 2.22 6.18 -82.59 -0.51 1.71 16 7 C -0.07 -1.02 5.44 -27.88 -0.15 -1.18 16 8 C 0.07 1.40 4.80 -3.83 -0.02 1.38 16 9 N -0.51 -11.22 4.58 -228.08 -1.05 -12.27 16 10 C 0.20 5.21 4.75 -4.98 -0.02 5.19 16 11 C -0.50 -13.89 7.82 -34.44 -0.27 -14.16 16 12 H 0.07 1.85 5.55 -52.49 -0.29 1.56 16 13 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 C 0.03 0.50 4.19 -67.71 -0.28 0.21 16 20 C -0.19 -3.08 9.31 -26.69 -0.25 -3.33 16 21 C -0.16 -3.01 9.41 -26.69 -0.25 -3.26 16 22 N -0.48 -7.52 9.79 -5.74 -0.06 -7.58 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 27 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.13 1.34 7.95 -52.49 -0.42 0.92 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.13 6.33 -51.93 -0.33 0.81 16 31 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.08 1.64 7.65 -51.93 -0.40 1.24 16 33 H 0.00 -0.11 8.02 -51.93 -0.42 -0.53 16 34 H 0.03 0.72 7.76 -51.93 -0.40 0.32 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.12 2.58 5.32 -51.93 -0.28 2.30 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -31.12 328.66 -9.96 -41.07 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.31 Total: 1.17 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -3.22 Total: -17.72 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.37 Total: -46.20 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.12 -9.96 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399744549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.227 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds