Wall clock time and date at job start Mon Mar 30 2020 06:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 119.62269 * 2 1 4 4 C 1.38623 * 119.16397 * 180.02562 * 3 2 1 5 5 C 1.38678 * 118.41973 * 359.74927 * 4 3 2 6 6 C 1.38176 * 119.16146 * 0.48897 * 5 4 3 7 7 C 1.50701 * 119.61592 * 179.77449 * 6 5 4 8 8 C 1.52998 * 109.47402 * 124.72985 * 7 6 5 9 9 N 1.46900 * 109.47529 * 180.02562 * 8 7 6 10 10 C 1.46902 * 111.00095 * 190.00034 * 9 8 7 11 11 C 1.50694 * 109.46971 * 161.83393 * 10 9 8 12 12 H 1.08000 * 119.99992 * 354.36602 * 11 10 9 13 13 C 1.37881 * 119.99815 * 174.36420 * 11 10 9 14 14 N 1.31511 * 119.99945 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99916 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47092 * 60.00180 * 15 13 11 17 17 H 1.48505 * 109.47070 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47137 * 300.00067 * 15 13 11 19 19 C 1.46904 * 110.99870 * 66.04547 * 9 8 7 20 20 C 1.53001 * 117.49564 * 261.91117 * 19 9 8 21 21 C 1.52994 * 117.49700 * 193.25078 * 19 9 8 22 22 N 1.31856 * 119.61811 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47213 * 269.98054 * 1 2 3 24 24 H 1.09003 * 109.46667 * 29.97881 * 1 2 3 25 25 H 1.09000 * 109.47040 * 149.97918 * 1 2 3 26 26 H 1.08002 * 120.41153 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.78885 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.41521 * 180.24858 * 5 4 3 29 29 H 1.08998 * 109.47289 * 244.72697 * 7 6 5 30 30 H 1.08994 * 109.47055 * 4.72911 * 7 6 5 31 31 H 1.09002 * 109.47107 * 300.00293 * 8 7 6 32 32 H 1.09002 * 109.47233 * 59.99340 * 8 7 6 33 33 H 1.09004 * 109.46480 * 281.83643 * 10 9 8 34 34 H 1.09002 * 109.46946 * 41.82977 * 10 9 8 35 35 H 0.97000 * 119.99798 * 180.02562 * 14 13 11 36 36 H 1.08997 * 115.54675 * 47.57907 * 19 9 8 37 37 H 1.08995 * 117.50058 * 0.02562 * 20 19 9 38 38 H 1.09001 * 117.49292 * 145.02197 * 20 19 9 39 39 H 1.08992 * 117.49958 * 214.97545 * 21 19 9 40 40 H 1.08999 * 117.50264 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0343 0.0043 6 6 3.4766 -1.1948 -0.0009 7 6 4.1726 -2.5314 -0.0009 8 6 3.6748 -3.3657 1.1811 9 7 4.3537 -4.6684 1.1814 10 6 3.7372 -5.5831 2.1516 11 6 4.1344 -7.0004 1.8283 12 1 4.7043 -7.2112 0.9354 13 6 3.7702 -8.0280 2.6724 14 7 3.0759 -7.7713 3.7594 15 14 4.2632 -9.7848 2.2721 16 1 5.7436 -9.8810 2.2076 17 1 3.7530 -10.6951 3.3287 18 1 3.6843 -10.1749 0.9614 19 6 5.7908 -4.5131 1.4440 20 6 6.7327 -4.5090 0.2383 21 6 6.6925 -5.7193 1.1746 22 7 2.1586 -1.1463 -0.0005 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6508 2.1373 -0.0004 27 1 4.1367 2.1139 -0.0001 28 1 5.3056 -0.0806 0.0080 29 1 3.9549 -3.0545 -0.9320 30 1 5.2484 -2.3808 0.0882 31 1 3.8925 -2.8427 2.1123 32 1 2.5989 -3.5163 1.0920 33 1 4.0773 -5.3305 3.1559 34 1 2.6524 -5.4892 2.1009 35 1 2.8200 -8.4942 4.3534 36 1 6.0480 -3.8703 2.2858 37 1 6.2862 -4.6212 -0.7496 38 1 7.6099 -3.8639 0.2872 39 1 7.5433 -5.8699 1.8390 40 1 6.2195 -6.6283 0.8031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399744549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:04 Heat of formation + Delta-G solvation = 40.081186 kcal Electronic energy + Delta-G solvation = -19004.279862 eV Core-core repulsion = 16204.800425 eV Total energy + Delta-G solvation = -2799.479437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24005 -39.36384 -35.69581 -35.11003 -33.95749 -33.47425 -31.04678 -28.85850 -27.71420 -24.76036 -24.13289 -23.07731 -22.93030 -22.25586 -20.98590 -18.57777 -17.31638 -17.25865 -16.69363 -16.60600 -16.20530 -16.01188 -15.44477 -15.09830 -14.49359 -14.42574 -13.94940 -13.86488 -13.70475 -13.60829 -13.18005 -13.04587 -12.89997 -12.61024 -12.49757 -12.42493 -12.25773 -12.07864 -11.72694 -11.22258 -10.99670 -10.73337 -10.67044 -10.51817 -10.25344 -9.68085 -9.05829 -8.15212 -6.23529 0.19199 0.42076 1.41789 1.45453 1.52636 2.42270 2.81741 3.05176 3.15965 3.20914 3.39103 3.83998 3.91180 4.14972 4.21377 4.24410 4.25713 4.32440 4.39061 4.57937 4.63026 4.68302 4.71802 4.77865 4.80178 4.91346 4.94071 5.05045 5.10795 5.17156 5.20734 5.22333 5.28900 5.37807 5.39663 5.51582 5.79271 5.87657 6.09935 6.41885 6.63653 6.91413 7.17167 7.44231 8.96006 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.004458 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.177477 B = 6279.786089 C = 7080.470258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.105 3.895 3 C -0.180 4.180 4 C -0.070 4.070 5 C -0.181 4.181 6 C 0.118 3.882 7 C -0.047 4.047 8 C 0.080 3.920 9 N -0.514 5.514 10 C 0.212 3.788 11 C -0.506 4.506 12 H 0.074 0.926 13 C -0.002 4.002 14 N -0.941 5.941 15 Si 0.966 3.034 16 H -0.263 1.263 17 H -0.287 1.287 18 H -0.269 1.269 19 C -0.003 4.003 20 C -0.141 4.141 21 C -0.172 4.172 22 N -0.521 5.521 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.155 0.845 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.008 0.992 32 H 0.051 0.949 33 H -0.038 1.038 34 H -0.009 1.009 35 H 0.262 0.738 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 19.032 -8.792 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.095 4.095 5 C -0.201 4.201 6 C -0.020 4.020 7 C -0.086 4.086 8 C -0.048 4.048 9 N -0.238 5.238 10 C 0.086 3.914 11 C -0.544 4.544 12 H 0.092 0.908 13 C -0.199 4.199 14 N -0.582 5.582 15 Si 0.790 3.210 16 H -0.188 1.188 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.112 4.112 20 C -0.178 4.178 21 C -0.209 4.209 22 N -0.233 5.233 23 H 0.098 0.902 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.182 0.818 27 H 0.187 0.813 28 H 0.173 0.827 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.026 0.974 32 H 0.070 0.930 33 H -0.020 1.020 34 H 0.009 0.991 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.563 17.962 -9.108 20.302 hybrid contribution 0.210 -0.136 1.313 1.337 sum 2.773 17.826 -7.795 19.652 Atomic orbital electron populations 1.20781 0.87614 1.04068 1.03488 1.21848 0.98280 0.88567 0.94598 1.22291 0.95501 0.99507 1.02648 1.22007 0.94640 0.98887 0.94013 1.22237 1.02414 0.92610 1.02853 1.21385 0.89455 0.96144 0.94981 1.20386 0.99635 0.90017 0.98521 1.21793 0.97874 0.89131 0.96032 1.61868 1.01417 1.09685 1.50845 1.19338 0.92269 0.91982 0.87847 1.21519 1.33633 0.91396 1.07886 0.90794 1.25919 0.95346 1.03805 0.94824 1.70107 1.40065 1.33808 1.14240 0.85487 0.79092 0.78605 0.77782 1.18779 1.21218 1.19437 1.22195 0.86719 1.03060 0.99217 1.23111 0.99877 1.00424 0.94398 1.23106 1.00444 0.93983 1.03388 1.67300 1.10568 1.31301 1.14081 0.90174 0.87921 0.91835 0.81806 0.81320 0.82740 0.90441 0.88432 0.97406 0.93035 1.02050 0.99102 0.92961 0.91434 0.88664 0.86358 0.88829 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 10.17 71.23 0.72 -1.24 16 2 C 0.10 2.63 6.78 42.55 0.29 2.92 16 3 C -0.18 -3.34 9.74 22.36 0.22 -3.13 16 4 C -0.07 -1.22 10.18 22.47 0.23 -1.00 16 5 C -0.18 -4.01 9.71 22.36 0.22 -3.79 16 6 C 0.12 3.48 6.18 42.54 0.26 3.74 16 7 C -0.05 -1.50 5.44 29.85 0.16 -1.34 16 8 C 0.08 3.27 4.80 86.30 0.41 3.68 16 9 N -0.51 -23.49 4.58 -875.52 -4.01 -27.50 16 10 C 0.21 11.96 4.75 85.55 0.41 12.36 16 11 C -0.51 -29.20 7.82 25.60 0.20 -29.00 16 12 H 0.07 4.12 5.55 -2.91 -0.02 4.10 16 13 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 14 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 15 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 C 0.00 -0.12 4.19 44.91 0.19 0.07 16 20 C -0.14 -4.23 9.31 30.62 0.29 -3.94 16 21 C -0.17 -6.49 9.41 30.62 0.29 -6.20 16 22 N -0.52 -16.81 9.79 -172.08 -1.69 -18.49 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.10 1.27 8.08 -2.39 -0.02 1.25 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 27 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.15 2.60 7.95 -2.91 -0.02 2.58 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.10 2.64 6.33 -2.39 -0.02 2.63 16 31 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 32 H 0.05 2.33 7.65 -2.39 -0.02 2.31 16 33 H -0.04 -2.37 8.02 -2.39 -0.02 -2.39 16 34 H -0.01 -0.56 7.76 -2.39 -0.02 -0.58 16 35 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.09 3.95 5.32 -2.39 -0.01 3.93 16 Total: -1.00 -71.71 328.66 1.97 -69.74 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.01 Total: 13.90 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 4.35 Total: -26.50 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -5.41 Total: -104.34 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -71.71 1.97 -69.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399744549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.822 kcal (2) G-P(sol) polarization free energy of solvation -71.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds