Wall clock time and date at job start Mon Mar 30 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38679 * 120.41859 * 2 1 4 4 C 1.38631 * 118.41913 * 180.02562 * 3 2 1 5 5 C 1.38217 * 119.16333 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.62166 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47390 * 125.00145 * 6 5 4 8 8 N 1.46899 * 109.46953 * 180.02562 * 7 6 5 9 9 C 1.46903 * 110.99695 * 189.99686 * 8 7 6 10 10 C 1.50700 * 109.46983 * 159.05912 * 9 8 7 11 11 H 1.08002 * 119.99727 * 354.68332 * 10 9 8 12 12 C 1.37881 * 120.00100 * 174.67507 * 10 9 8 13 13 N 1.31506 * 120.00132 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99880 * 0.02562 * 12 10 9 15 15 H 1.48492 * 109.47067 * 89.99497 * 14 12 10 16 16 H 1.48499 * 109.47265 * 210.00036 * 14 12 10 17 17 H 1.48500 * 109.46834 * 329.99812 * 14 12 10 18 18 C 1.46895 * 111.00174 * 66.04555 * 8 7 6 19 19 C 1.52995 * 117.50067 * 264.68752 * 18 8 7 20 20 C 1.52997 * 117.50020 * 196.02516 * 18 8 7 21 21 N 1.31857 * 120.76377 * 0.25805 * 5 4 3 22 22 C 1.31887 * 121.72461 * 359.47240 * 21 5 4 23 23 H 1.08998 * 109.47198 * 90.00102 * 1 2 3 24 24 H 1.08996 * 109.47111 * 210.00200 * 1 2 3 25 25 H 1.09007 * 109.46824 * 329.99877 * 1 2 3 26 26 H 1.08003 * 120.78676 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.41291 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.46881 * 5.00020 * 6 5 4 29 29 H 1.08998 * 109.46927 * 245.00218 * 6 5 4 30 30 H 1.08997 * 109.47211 * 60.00077 * 7 6 5 31 31 H 1.09007 * 109.46967 * 300.00067 * 7 6 5 32 32 H 1.09003 * 109.47203 * 279.06100 * 9 8 7 33 33 H 1.09001 * 109.47277 * 39.05952 * 9 8 7 34 34 H 0.97005 * 120.00515 * 180.02562 * 13 12 10 35 35 H 1.09003 * 115.55352 * 50.35648 * 18 8 7 36 36 H 1.08997 * 117.49841 * 359.97438 * 19 18 8 37 37 H 1.08999 * 117.50492 * 145.01830 * 19 18 8 38 38 H 1.09004 * 117.50210 * 214.97697 * 20 18 8 39 39 H 1.08998 * 117.49990 * 359.97438 * 20 18 8 40 40 H 1.08003 * 119.61676 * 180.26937 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0822 -0.0005 6 6 5.7312 -0.1468 -0.0017 7 6 6.2063 -0.9948 1.1799 8 7 7.6739 -1.0573 1.1790 9 6 8.1592 -2.0482 2.1488 10 6 9.5615 -2.4628 1.7843 11 1 10.0123 -2.0993 0.8727 12 6 10.2690 -3.3059 2.6149 13 7 11.4929 -3.6672 2.2971 14 14 9.4890 -3.9348 4.1914 15 1 8.7759 -5.2081 3.9171 16 1 10.5462 -4.1686 5.2078 17 1 8.5249 -2.9277 4.7027 18 6 8.2573 0.2652 1.4410 19 6 8.6633 1.1104 0.2321 20 6 9.7377 0.4626 1.1092 21 7 3.5255 -1.1995 -0.0051 22 6 2.2066 -1.1916 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6889 2.1424 -0.0004 27 1 4.1735 2.0593 -0.0001 28 1 6.1381 0.8604 0.0871 29 1 6.0748 -0.5967 -0.9332 30 1 5.7994 -2.0021 1.0910 31 1 5.8626 -0.5449 2.1114 32 1 8.1575 -1.6107 3.1471 33 1 7.5067 -2.9213 2.1336 34 1 11.9906 -4.2607 2.8812 35 1 7.8625 0.7891 2.3115 36 1 8.4980 0.6850 -0.7577 37 1 8.5360 2.1903 0.3072 38 1 10.3168 1.1168 1.7611 39 1 10.2790 -0.3889 0.6968 40 1 1.6672 -2.1272 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399776593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:16 Heat of formation + Delta-G solvation = 60.867940 kcal Electronic energy + Delta-G solvation = -18938.230377 eV Core-core repulsion = 16139.652321 eV Total energy + Delta-G solvation = -2798.578056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34540 -37.85089 -34.66680 -33.49238 -32.61061 -32.05821 -30.27448 -27.57038 -25.72719 -23.85782 -22.48414 -21.91483 -21.55571 -20.90909 -19.40955 -16.80470 -16.68892 -16.14103 -15.25369 -15.19590 -14.76649 -14.40525 -14.24924 -13.78822 -13.39374 -13.21126 -12.88684 -12.68473 -12.62020 -12.44340 -12.08467 -11.89835 -11.56842 -11.15764 -10.87176 -10.77097 -10.66749 -10.23996 -9.93912 -9.84072 -9.58119 -9.36426 -9.18459 -9.07404 -8.74327 -8.48037 -7.34992 -5.97822 -3.93169 1.04809 1.23103 3.33126 3.40147 3.42692 3.72827 4.30214 4.47834 4.51232 4.59656 4.66298 4.76741 4.85748 4.96644 5.27902 5.30162 5.33179 5.46439 5.49891 5.64417 5.65975 5.67279 5.75398 5.77384 5.98434 6.06116 6.12100 6.14738 6.18331 6.33757 6.46727 6.53947 6.70390 6.74930 6.87752 7.01519 7.17761 7.71470 7.94992 8.03664 8.15388 8.74256 9.12282 9.64544 11.14939 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.004500 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.121710 B = 6220.119880 C = 7036.896080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.155 4.155 3 C -0.077 4.077 4 C -0.169 4.169 5 C 0.137 3.863 6 C -0.065 4.065 7 C 0.070 3.930 8 N -0.501 5.501 9 C 0.163 3.837 10 C -0.497 4.497 11 H 0.086 0.914 12 C 0.067 3.933 13 N -0.903 5.903 14 Si 0.870 3.130 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.019 3.981 19 C -0.185 4.185 20 C -0.149 4.149 21 N -0.475 5.475 22 C 0.102 3.898 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.017 0.983 32 H -0.008 1.008 33 H 0.022 0.978 34 H 0.262 0.738 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.025 11.036 -4.104 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.157 4.157 3 C -0.103 4.103 4 C -0.189 4.189 5 C -0.001 4.001 6 C -0.103 4.103 7 C -0.059 4.059 8 N -0.225 5.225 9 C 0.037 3.963 10 C -0.536 4.536 11 H 0.104 0.896 12 C -0.134 4.134 13 N -0.542 5.542 14 Si 0.698 3.302 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.194 1.194 18 C -0.091 4.091 19 C -0.223 4.223 20 C -0.186 4.186 21 N -0.183 5.183 22 C -0.055 4.055 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.036 0.964 32 H 0.010 0.990 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.262 9.960 -4.496 21.282 hybrid contribution -1.127 0.664 1.804 2.228 sum -19.389 10.625 -2.692 22.272 Atomic orbital electron populations 1.20677 0.90472 1.02898 1.02341 1.20893 0.97405 0.94413 1.03002 1.21443 0.94048 0.97987 0.96797 1.22015 0.95016 0.99163 1.02665 1.21485 0.97143 0.88147 0.93298 1.20599 0.86788 1.01798 1.01138 1.21931 0.89225 1.00018 0.94730 1.61733 1.03941 1.04725 1.52091 1.20196 0.97129 0.89818 0.89134 1.21104 0.96371 1.27501 1.08577 0.89618 1.24879 0.94753 0.96165 0.97589 1.69882 1.10406 1.35888 1.38074 0.86941 0.79290 0.79718 0.84278 1.20255 1.21328 1.19388 1.22097 0.98895 0.91717 0.96359 1.23048 1.06035 0.96902 0.96295 1.23107 0.91196 1.02649 1.01690 1.67553 1.07874 1.31243 1.11650 1.22686 0.89923 0.97358 0.95569 0.91149 0.91297 0.91595 0.85184 0.84857 0.90153 0.89218 0.90222 0.96443 0.98980 0.96020 0.92811 0.91494 0.88838 0.90239 0.90180 0.86123 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.04 36.00 0.36 -0.35 16 2 C -0.16 -1.56 5.90 -104.48 -0.62 -2.18 16 3 C -0.08 -0.77 9.86 -39.27 -0.39 -1.16 16 4 C -0.17 -1.95 9.71 -39.44 -0.38 -2.33 16 5 C 0.14 1.94 6.17 -82.59 -0.51 1.43 16 6 C -0.07 -0.98 5.39 -27.88 -0.15 -1.13 16 7 C 0.07 1.27 4.80 -3.82 -0.02 1.26 16 8 N -0.50 -10.64 4.56 -228.08 -1.04 -11.68 16 9 C 0.16 4.04 3.87 -4.97 -0.02 4.02 16 10 C -0.50 -14.05 8.54 -34.44 -0.29 -14.34 16 11 H 0.09 2.60 6.08 -52.49 -0.32 2.28 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 14 Si 0.87 21.86 27.58 -169.99 -4.69 17.17 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.27 -6.59 6.39 56.52 0.36 -6.22 16 18 C 0.02 0.35 4.22 -67.72 -0.29 0.07 16 19 C -0.19 -2.99 9.05 -26.70 -0.24 -3.24 16 20 C -0.15 -2.90 9.51 -26.70 -0.25 -3.15 16 21 N -0.47 -7.11 9.89 -9.47 -0.09 -7.21 16 22 C 0.10 1.23 10.86 -17.55 -0.19 1.04 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 25 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 26 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 27 H 0.13 1.27 7.95 -52.49 -0.42 0.85 16 28 H 0.08 1.10 6.18 -51.93 -0.32 0.78 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.55 7.63 -51.93 -0.40 1.15 16 31 H 0.02 0.32 8.12 -51.92 -0.42 -0.10 16 32 H -0.01 -0.19 6.66 -51.93 -0.35 -0.54 16 33 H 0.02 0.55 7.40 -51.93 -0.38 0.16 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.12 2.76 5.69 -51.93 -0.30 2.46 16 40 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -31.50 325.14 -9.53 -41.03 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.30 Total: 0.90 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -3.09 Total: -18.21 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.36 Total: -45.79 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.69 Total: 17.17 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.50 -9.53 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399776593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.900 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds