Wall clock time and date at job start Mon Mar 30 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38679 * 120.41859 * 2 1 4 4 C 1.38631 * 118.41913 * 180.02562 * 3 2 1 5 5 C 1.38217 * 119.16333 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.62166 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47390 * 125.00145 * 6 5 4 8 8 N 1.46899 * 109.46953 * 180.02562 * 7 6 5 9 9 C 1.46903 * 110.99695 * 189.99686 * 8 7 6 10 10 C 1.50700 * 109.46983 * 159.05912 * 9 8 7 11 11 H 1.08002 * 119.99727 * 354.68332 * 10 9 8 12 12 C 1.37881 * 120.00100 * 174.67507 * 10 9 8 13 13 N 1.31506 * 120.00132 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99880 * 0.02562 * 12 10 9 15 15 H 1.48492 * 109.47067 * 89.99497 * 14 12 10 16 16 H 1.48499 * 109.47265 * 210.00036 * 14 12 10 17 17 H 1.48500 * 109.46834 * 329.99812 * 14 12 10 18 18 C 1.46895 * 111.00174 * 66.04555 * 8 7 6 19 19 C 1.52995 * 117.50067 * 264.68752 * 18 8 7 20 20 C 1.52997 * 117.50020 * 196.02516 * 18 8 7 21 21 N 1.31857 * 120.76377 * 0.25805 * 5 4 3 22 22 C 1.31887 * 121.72461 * 359.47240 * 21 5 4 23 23 H 1.08998 * 109.47198 * 90.00102 * 1 2 3 24 24 H 1.08996 * 109.47111 * 210.00200 * 1 2 3 25 25 H 1.09007 * 109.46824 * 329.99877 * 1 2 3 26 26 H 1.08003 * 120.78676 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.41291 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.46881 * 5.00020 * 6 5 4 29 29 H 1.08998 * 109.46927 * 245.00218 * 6 5 4 30 30 H 1.08997 * 109.47211 * 60.00077 * 7 6 5 31 31 H 1.09007 * 109.46967 * 300.00067 * 7 6 5 32 32 H 1.09003 * 109.47203 * 279.06100 * 9 8 7 33 33 H 1.09001 * 109.47277 * 39.05952 * 9 8 7 34 34 H 0.97005 * 120.00515 * 180.02562 * 13 12 10 35 35 H 1.09003 * 115.55352 * 50.35648 * 18 8 7 36 36 H 1.08997 * 117.49841 * 359.97438 * 19 18 8 37 37 H 1.08999 * 117.50492 * 145.01830 * 19 18 8 38 38 H 1.09004 * 117.50210 * 214.97697 * 20 18 8 39 39 H 1.08998 * 117.49990 * 359.97438 * 20 18 8 40 40 H 1.08003 * 119.61676 * 180.26937 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0822 -0.0005 6 6 5.7312 -0.1468 -0.0017 7 6 6.2063 -0.9948 1.1799 8 7 7.6739 -1.0573 1.1790 9 6 8.1592 -2.0482 2.1488 10 6 9.5615 -2.4628 1.7843 11 1 10.0123 -2.0993 0.8727 12 6 10.2690 -3.3059 2.6149 13 7 11.4929 -3.6672 2.2971 14 14 9.4890 -3.9348 4.1914 15 1 8.7759 -5.2081 3.9171 16 1 10.5462 -4.1686 5.2078 17 1 8.5249 -2.9277 4.7027 18 6 8.2573 0.2652 1.4410 19 6 8.6633 1.1104 0.2321 20 6 9.7377 0.4626 1.1092 21 7 3.5255 -1.1995 -0.0051 22 6 2.2066 -1.1916 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6889 2.1424 -0.0004 27 1 4.1735 2.0593 -0.0001 28 1 6.1381 0.8604 0.0871 29 1 6.0748 -0.5967 -0.9332 30 1 5.7994 -2.0021 1.0910 31 1 5.8626 -0.5449 2.1114 32 1 8.1575 -1.6107 3.1471 33 1 7.5067 -2.9213 2.1336 34 1 11.9906 -4.2607 2.8812 35 1 7.8625 0.7891 2.3115 36 1 8.4980 0.6850 -0.7577 37 1 8.5360 2.1903 0.3072 38 1 10.3168 1.1168 1.7611 39 1 10.2790 -0.3889 0.6968 40 1 1.6672 -2.1272 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399776593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:15 Heat of formation + Delta-G solvation = 41.093116 kcal Electronic energy + Delta-G solvation = -18939.087878 eV Core-core repulsion = 16139.652321 eV Total energy + Delta-G solvation = -2799.435556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23900 -39.40532 -35.79765 -35.13993 -34.22485 -33.20596 -31.55947 -29.15714 -26.88378 -24.83710 -23.81072 -23.55827 -23.02799 -22.00086 -21.03245 -18.89381 -17.63974 -17.14621 -16.87301 -16.22552 -16.15399 -15.93811 -15.47660 -15.28321 -14.63604 -14.46659 -14.06294 -13.89464 -13.78953 -13.65760 -13.38904 -13.21134 -12.93825 -12.49681 -12.38435 -12.38159 -12.20897 -11.93074 -11.87134 -11.31533 -11.02587 -10.74647 -10.68320 -10.67288 -10.26182 -9.62514 -9.03906 -8.23064 -6.23306 0.18115 0.40684 1.33390 1.33636 1.43729 2.35634 2.81414 3.00200 3.08773 3.16571 3.48682 3.83324 3.97555 4.06621 4.13818 4.19791 4.22116 4.27682 4.36396 4.49417 4.56852 4.69464 4.74698 4.81896 4.84712 4.85789 4.91787 4.92582 5.06846 5.09672 5.15966 5.25703 5.29563 5.34275 5.40230 5.53225 5.62170 5.86542 6.02879 6.49512 6.66312 6.83266 7.13510 7.38307 8.92753 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.004500 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.121710 B = 6220.119880 C = 7036.896080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.147 4.147 3 C -0.078 4.078 4 C -0.167 4.167 5 C 0.107 3.893 6 C -0.050 4.050 7 C 0.077 3.923 8 N -0.516 5.516 9 C 0.172 3.828 10 C -0.497 4.497 11 H 0.052 0.948 12 C 0.010 3.990 13 N -0.947 5.947 14 Si 0.936 3.064 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.257 1.257 18 C 0.002 3.998 19 C -0.141 4.141 20 C -0.172 4.172 21 N -0.514 5.514 22 C 0.081 3.919 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.164 0.836 27 H 0.155 0.845 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.019 0.981 32 H -0.012 1.012 33 H 0.017 0.983 34 H 0.265 0.735 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.003 13.280 -3.606 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.149 4.149 3 C -0.104 4.104 4 C -0.186 4.186 5 C -0.030 4.030 6 C -0.089 4.089 7 C -0.051 4.051 8 N -0.240 5.240 9 C 0.045 3.955 10 C -0.535 4.535 11 H 0.070 0.930 12 C -0.187 4.187 13 N -0.589 5.589 14 Si 0.761 3.239 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.182 1.182 18 C -0.106 4.106 19 C -0.179 4.179 20 C -0.210 4.210 21 N -0.223 5.223 22 C -0.076 4.076 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.182 0.818 27 H 0.173 0.827 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.006 0.994 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -21.261 12.219 -4.012 24.848 hybrid contribution -0.253 0.002 1.550 1.571 sum -21.514 12.221 -2.462 24.865 Atomic orbital electron populations 1.20756 0.87888 1.04097 1.03444 1.21287 0.99230 0.93732 1.00622 1.21879 0.93568 0.99384 0.95565 1.22241 0.96076 0.98761 1.01554 1.21359 0.96367 0.89257 0.96014 1.20398 0.88210 1.01594 0.98654 1.21871 0.87065 0.99758 0.96444 1.61639 1.05912 1.05451 1.50965 1.19939 0.95011 0.90792 0.89716 1.21297 0.97962 1.26943 1.07307 0.93029 1.25711 0.95194 0.96547 1.01269 1.70027 1.12058 1.37082 1.39741 0.85877 0.78634 0.79415 0.79969 1.19472 1.20651 1.18165 1.22248 0.98293 0.91341 0.98750 1.23101 1.01377 0.98615 0.94785 1.22959 0.91632 1.02449 1.03925 1.67437 1.09566 1.32413 1.12932 1.23043 0.89260 0.99089 0.96257 0.89923 0.90557 0.90007 0.81815 0.82697 0.88452 0.90806 0.92240 0.96250 0.99381 0.96523 0.92647 0.90230 0.89041 0.86043 0.88800 0.90563 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.04 71.23 0.72 -0.32 16 2 C -0.15 -2.55 5.90 -19.77 -0.12 -2.67 16 3 C -0.08 -1.29 9.86 22.47 0.22 -1.07 16 4 C -0.17 -3.41 9.71 22.36 0.22 -3.19 16 5 C 0.11 2.94 6.17 42.55 0.26 3.20 16 6 C -0.05 -1.49 5.39 29.85 0.16 -1.33 16 7 C 0.08 2.82 4.80 86.30 0.41 3.24 16 8 N -0.52 -22.18 4.56 -875.53 -3.99 -26.17 16 9 C 0.17 8.70 3.87 85.56 0.33 9.03 16 10 C -0.50 -29.16 8.54 25.60 0.22 -28.94 16 11 H 0.05 3.33 6.08 -2.91 -0.02 3.31 16 12 C 0.01 0.57 5.47 84.66 0.46 1.03 16 13 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 14 Si 0.94 45.70 27.58 68.60 1.89 47.59 16 15 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 17 H -0.26 -11.98 6.39 99.48 0.64 -11.34 16 18 C 0.00 0.09 4.22 44.91 0.19 0.28 16 19 C -0.14 -4.28 9.05 30.62 0.28 -4.01 16 20 C -0.17 -6.74 9.51 30.62 0.29 -6.45 16 21 N -0.51 -15.32 9.89 -183.89 -1.82 -17.13 16 22 C 0.08 1.85 10.86 84.67 0.92 2.77 16 23 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 25 H 0.08 0.59 8.10 -2.38 -0.02 0.57 16 26 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 27 H 0.16 2.37 7.95 -2.91 -0.02 2.35 16 28 H 0.10 2.46 6.18 -2.39 -0.01 2.45 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.39 7.63 -2.39 -0.02 2.37 16 31 H 0.02 0.70 8.12 -2.38 -0.02 0.68 16 32 H -0.01 -0.59 6.66 -2.39 -0.02 -0.60 16 33 H 0.02 0.85 7.40 -2.39 -0.02 0.84 16 34 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 35 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 39 H 0.08 3.70 5.69 -2.39 -0.01 3.69 16 40 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -71.42 325.14 1.89 -69.54 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.94 Total: 14.36 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 4.56 Total: -28.42 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -5.51 Total: -103.07 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.89 Total: 47.59 kcal Total: -71.42 1.89 -69.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399776593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.633 kcal (2) G-P(sol) polarization free energy of solvation -71.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds