Wall clock time and date at job start Mon Mar 30 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 119.61481 * 2 1 4 4 C 1.38633 * 119.15790 * 179.97438 * 3 2 1 5 5 C 1.38664 * 118.42441 * 359.97438 * 4 3 2 6 6 C 1.38191 * 119.16224 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.61845 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47109 * 124.97868 * 7 6 5 9 9 N 1.46894 * 109.47405 * 180.02562 * 8 7 6 10 10 C 1.47849 * 110.99683 * 290.83982 * 9 8 7 11 11 C 1.54907 * 104.79772 * 213.63577 * 10 9 8 12 12 C 1.55144 * 101.65054 * 37.06620 * 11 10 9 13 13 H 1.09004 * 110.69994 * 82.73227 * 12 11 10 14 14 C 1.50707 * 110.85473 * 205.89198 * 12 11 10 15 15 H 1.08002 * 119.99375 * 113.68996 * 14 12 11 16 16 C 1.37869 * 119.99957 * 293.69142 * 14 12 11 17 17 N 1.31512 * 120.00704 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99734 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47221 * 90.00124 * 18 16 14 20 20 H 1.48502 * 109.47341 * 209.99950 * 18 16 14 21 21 H 1.48496 * 109.47356 * 330.00147 * 18 16 14 22 22 C 1.47440 * 111.00368 * 170.00104 * 9 8 7 23 23 N 1.31852 * 119.62075 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47135 * 89.99841 * 1 2 3 25 25 H 1.08998 * 109.46954 * 210.00110 * 1 2 3 26 26 H 1.09006 * 109.47365 * 329.99593 * 1 2 3 27 27 H 1.07995 * 120.42209 * 359.72823 * 3 2 1 28 28 H 1.08004 * 120.79144 * 179.97438 * 4 3 2 29 29 H 1.07999 * 120.42576 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47044 * 244.97510 * 7 6 5 31 31 H 1.09003 * 109.47430 * 4.97737 * 7 6 5 32 32 H 1.09003 * 109.46875 * 299.99745 * 8 7 6 33 33 H 1.09002 * 109.47525 * 59.99359 * 8 7 6 34 34 H 1.08993 * 110.37546 * 332.46907 * 10 9 8 35 35 H 1.09002 * 110.37466 * 94.80560 * 10 9 8 36 36 H 1.09004 * 110.99030 * 278.97848 * 11 10 9 37 37 H 1.08990 * 111.02432 * 155.17588 * 11 10 9 38 38 H 0.96993 * 120.00729 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.88679 * 242.66491 * 22 9 8 40 40 H 1.09005 * 109.88958 * 3.68290 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.2017 0.0000 4 6 3.5763 1.1906 0.0005 5 6 4.2266 -0.0341 0.0016 6 6 3.4766 -1.1947 0.0016 7 6 4.1727 -2.5313 0.0021 8 6 3.6744 -3.3653 1.1840 9 7 4.3533 -4.6680 1.1850 10 6 3.9112 -5.4966 0.0432 11 6 3.9445 -6.9516 0.5739 12 6 3.4640 -6.7625 2.0369 13 1 2.3758 -6.7190 2.0825 14 6 3.9889 -7.8646 2.9207 15 1 4.7001 -7.6382 3.7013 16 6 3.5611 -9.1617 2.7327 17 7 2.6947 -9.4373 1.7825 18 14 4.2123 -10.5278 3.8277 19 1 3.3320 -10.6727 5.0149 20 1 4.2328 -11.8037 3.0682 21 1 5.5895 -10.1932 4.2707 22 6 4.0813 -5.4048 2.4328 23 7 2.1587 -1.1462 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6507 2.1373 -0.0044 28 1 4.1366 2.1140 0.0001 29 1 5.3056 -0.0804 0.0016 30 1 3.9553 -3.0545 -0.9291 31 1 5.2485 -2.3807 0.0917 32 1 3.8917 -2.8421 2.1152 33 1 2.5985 -3.5160 1.0946 34 1 2.8986 -5.2241 -0.2539 35 1 4.5973 -5.3831 -0.7962 36 1 4.9567 -7.3549 0.5444 37 1 3.2568 -7.5871 0.0161 38 1 2.3940 -10.3499 1.6500 39 1 5.0109 -5.5652 2.9789 40 1 3.3810 -4.8423 3.0505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399781124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:29 Heat of formation + Delta-G solvation = 23.173187 kcal Electronic energy + Delta-G solvation = -18829.346816 eV Core-core repulsion = 16029.134193 eV Total energy + Delta-G solvation = -2800.212623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39791 -38.05066 -34.47124 -33.05375 -32.66478 -30.95370 -28.70885 -28.17489 -27.10647 -24.45136 -23.27728 -22.18885 -21.33232 -19.69983 -19.43034 -16.56314 -16.42267 -16.38517 -15.43385 -15.02250 -14.67860 -14.33219 -14.21146 -13.84056 -13.17248 -13.06713 -12.80153 -12.44835 -12.34904 -12.17776 -11.93574 -11.81562 -11.52414 -10.98986 -10.92431 -10.66379 -10.64965 -10.46530 -10.13389 -9.88814 -9.57917 -9.41600 -9.23037 -8.83499 -8.81093 -8.35001 -7.52059 -5.98303 -4.00714 1.01116 1.19554 3.33350 3.39931 3.43669 3.66378 4.12164 4.45568 4.51172 4.59234 4.94054 4.94823 5.03758 5.33059 5.35832 5.40007 5.43374 5.43876 5.50086 5.63168 5.87490 5.89859 5.99256 6.03284 6.05436 6.14432 6.29547 6.36581 6.38517 6.46902 6.61749 6.70702 6.93794 7.21969 7.25785 7.65195 7.67686 7.89368 7.95301 8.00263 8.05414 8.46604 9.01216 9.62986 11.11857 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.040661 B = 0.003557 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.451271 B = 7870.356660 C = 8111.234261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.130 3.870 3 C -0.186 4.186 4 C -0.072 4.072 5 C -0.178 4.178 6 C 0.146 3.854 7 C -0.066 4.066 8 C 0.063 3.937 9 N -0.535 5.535 10 C 0.036 3.964 11 C -0.105 4.105 12 C 0.034 3.966 13 H 0.030 0.970 14 C -0.509 4.509 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.049 3.951 23 N -0.480 5.480 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.259 0.741 39 H 0.068 0.932 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 20.249 -5.175 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.008 4.008 3 C -0.206 4.206 4 C -0.098 4.098 5 C -0.198 4.198 6 C 0.008 3.992 7 C -0.104 4.104 8 C -0.066 4.066 9 N -0.259 5.259 10 C -0.091 4.091 11 C -0.143 4.143 12 C 0.015 3.985 13 H 0.048 0.952 14 C -0.548 4.548 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.078 4.078 23 N -0.190 5.190 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.478 19.425 -5.286 20.137 hybrid contribution -0.066 -0.021 0.597 0.601 sum -0.543 19.404 -4.689 19.970 Atomic orbital electron populations 1.20721 0.88971 1.03494 1.03019 1.21322 0.97021 0.88298 0.94155 1.21896 0.95002 0.99130 1.04551 1.21549 0.94461 0.98201 0.95580 1.21998 1.01434 0.92856 1.03543 1.21395 0.89240 0.95755 0.92850 1.20566 0.99203 0.90153 1.00463 1.22084 0.96771 0.91018 0.96724 1.63597 1.55629 1.02663 1.04047 1.23150 0.97117 0.95535 0.93308 1.22623 1.00989 0.91968 0.98758 1.19809 0.95719 0.90534 0.92448 0.95201 1.21086 1.25590 0.91952 1.16160 0.92480 1.24981 0.94950 0.98708 0.95335 1.69960 1.31655 1.19651 1.31647 0.86611 0.79391 0.81550 0.80542 1.20777 1.21301 1.19859 1.22969 0.99450 0.95456 0.89962 1.67374 1.09624 1.29274 1.12721 0.90477 0.90275 0.90872 0.85151 0.85019 0.84760 0.89957 0.89685 0.91992 0.93965 0.94764 0.92217 0.92550 0.91347 0.93091 0.91358 0.94986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.17 36.00 0.37 -0.58 16 2 C 0.13 1.55 6.78 -82.59 -0.56 0.99 16 3 C -0.19 -1.82 9.74 -39.44 -0.38 -2.20 16 4 C -0.07 -0.68 10.18 -39.28 -0.40 -1.08 16 5 C -0.18 -1.96 9.71 -39.44 -0.38 -2.35 16 6 C 0.15 1.98 6.18 -82.59 -0.51 1.47 16 7 C -0.07 -0.93 5.66 -27.88 -0.16 -1.09 16 8 C 0.06 1.07 4.42 -3.83 -0.02 1.06 16 9 N -0.54 -10.52 5.16 -231.25 -1.19 -11.72 16 10 C 0.04 0.73 5.78 -2.30 -0.01 0.72 16 11 C -0.10 -2.51 5.95 -24.59 -0.15 -2.65 16 12 C 0.03 0.88 2.77 -89.95 -0.25 0.63 16 13 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.51 -14.23 8.48 -34.44 -0.29 -14.52 16 15 H 0.06 1.57 7.53 -52.49 -0.40 1.18 16 16 C 0.06 1.74 5.36 -17.82 -0.10 1.64 16 17 N -0.89 -25.96 12.49 55.43 0.69 -25.27 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.05 1.08 6.45 -2.84 -0.02 1.06 16 23 N -0.48 -6.97 9.79 -5.74 -0.06 -7.03 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 28 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 29 H 0.13 1.19 7.95 -52.49 -0.42 0.78 16 30 H 0.08 1.20 7.49 -51.93 -0.39 0.81 16 31 H 0.08 1.09 7.87 -51.93 -0.41 0.68 16 32 H 0.06 1.03 8.03 -51.93 -0.42 0.61 16 33 H 0.04 0.79 7.65 -51.93 -0.40 0.39 16 34 H 0.03 0.68 7.62 -51.93 -0.40 0.29 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.40 8.05 -51.93 -0.42 0.98 16 37 H 0.07 1.74 7.76 -51.93 -0.40 1.34 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.07 1.54 7.63 -51.93 -0.40 1.14 16 40 H 0.03 0.68 7.55 -51.93 -0.39 0.28 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -30.43 326.14 -10.04 -40.48 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.52 Total: -0.98 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -2.86 Total: -16.92 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.56 Total: -44.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.43 -10.04 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399781124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.649 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds