Wall clock time and date at job start Mon Mar 30 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 119.61481 * 2 1 4 4 C 1.38633 * 119.15790 * 179.97438 * 3 2 1 5 5 C 1.38664 * 118.42441 * 359.97438 * 4 3 2 6 6 C 1.38191 * 119.16224 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.61845 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47109 * 124.97868 * 7 6 5 9 9 N 1.46894 * 109.47405 * 180.02562 * 8 7 6 10 10 C 1.47849 * 110.99683 * 290.83982 * 9 8 7 11 11 C 1.54907 * 104.79772 * 213.63577 * 10 9 8 12 12 C 1.55144 * 101.65054 * 37.06620 * 11 10 9 13 13 H 1.09004 * 110.69994 * 82.73227 * 12 11 10 14 14 C 1.50707 * 110.85473 * 205.89198 * 12 11 10 15 15 H 1.08002 * 119.99375 * 113.68996 * 14 12 11 16 16 C 1.37869 * 119.99957 * 293.69142 * 14 12 11 17 17 N 1.31512 * 120.00704 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99734 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47221 * 90.00124 * 18 16 14 20 20 H 1.48502 * 109.47341 * 209.99950 * 18 16 14 21 21 H 1.48496 * 109.47356 * 330.00147 * 18 16 14 22 22 C 1.47440 * 111.00368 * 170.00104 * 9 8 7 23 23 N 1.31852 * 119.62075 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47135 * 89.99841 * 1 2 3 25 25 H 1.08998 * 109.46954 * 210.00110 * 1 2 3 26 26 H 1.09006 * 109.47365 * 329.99593 * 1 2 3 27 27 H 1.07995 * 120.42209 * 359.72823 * 3 2 1 28 28 H 1.08004 * 120.79144 * 179.97438 * 4 3 2 29 29 H 1.07999 * 120.42576 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47044 * 244.97510 * 7 6 5 31 31 H 1.09003 * 109.47430 * 4.97737 * 7 6 5 32 32 H 1.09003 * 109.46875 * 299.99745 * 8 7 6 33 33 H 1.09002 * 109.47525 * 59.99359 * 8 7 6 34 34 H 1.08993 * 110.37546 * 332.46907 * 10 9 8 35 35 H 1.09002 * 110.37466 * 94.80560 * 10 9 8 36 36 H 1.09004 * 110.99030 * 278.97848 * 11 10 9 37 37 H 1.08990 * 111.02432 * 155.17588 * 11 10 9 38 38 H 0.96993 * 120.00729 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.88679 * 242.66491 * 22 9 8 40 40 H 1.09005 * 109.88958 * 3.68290 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.2017 0.0000 4 6 3.5763 1.1906 0.0005 5 6 4.2266 -0.0341 0.0016 6 6 3.4766 -1.1947 0.0016 7 6 4.1727 -2.5313 0.0021 8 6 3.6744 -3.3653 1.1840 9 7 4.3533 -4.6680 1.1850 10 6 3.9112 -5.4966 0.0432 11 6 3.9445 -6.9516 0.5739 12 6 3.4640 -6.7625 2.0369 13 1 2.3758 -6.7190 2.0825 14 6 3.9889 -7.8646 2.9207 15 1 4.7001 -7.6382 3.7013 16 6 3.5611 -9.1617 2.7327 17 7 2.6947 -9.4373 1.7825 18 14 4.2123 -10.5278 3.8277 19 1 3.3320 -10.6727 5.0149 20 1 4.2328 -11.8037 3.0682 21 1 5.5895 -10.1932 4.2707 22 6 4.0813 -5.4048 2.4328 23 7 2.1587 -1.1462 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6507 2.1373 -0.0044 28 1 4.1366 2.1140 0.0001 29 1 5.3056 -0.0804 0.0016 30 1 3.9553 -3.0545 -0.9291 31 1 5.2485 -2.3807 0.0917 32 1 3.8917 -2.8421 2.1152 33 1 2.5985 -3.5160 1.0946 34 1 2.8986 -5.2241 -0.2539 35 1 4.5973 -5.3831 -0.7962 36 1 4.9567 -7.3549 0.5444 37 1 3.2568 -7.5871 0.0161 38 1 2.3940 -10.3499 1.6500 39 1 5.0109 -5.5652 2.9789 40 1 3.3810 -4.8423 3.0505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399781124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:29 Heat of formation + Delta-G solvation = 4.797299 kcal Electronic energy + Delta-G solvation = -18830.143654 eV Core-core repulsion = 16029.134193 eV Total energy + Delta-G solvation = -2801.009461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25749 -39.75074 -35.83733 -34.56918 -33.67316 -32.44743 -30.04704 -29.99010 -28.10334 -26.31250 -24.61332 -23.05511 -22.48467 -21.46223 -21.23220 -18.58830 -17.32915 -17.25460 -16.85418 -16.45594 -16.26602 -15.71964 -15.44140 -15.17121 -14.46266 -14.19660 -13.98104 -13.88587 -13.60631 -13.49525 -13.14810 -13.04914 -12.96729 -12.68826 -12.61403 -12.41687 -12.29156 -12.06893 -11.83638 -11.52085 -11.20456 -10.92293 -10.72085 -10.50196 -10.28747 -9.68525 -9.19212 -8.14387 -6.24626 0.18383 0.41095 1.41772 1.42277 1.53375 2.42938 2.80017 3.09333 3.16819 3.35926 3.86036 3.92798 4.06390 4.12621 4.19236 4.25806 4.37443 4.42770 4.53269 4.57507 4.61605 4.69112 4.72951 4.76898 4.84778 4.89971 4.97218 4.98524 5.13926 5.20333 5.25435 5.29317 5.34142 5.39024 5.56809 5.70408 5.85952 5.87114 6.13155 6.26774 6.34097 6.84082 7.14946 7.42904 8.95490 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.040661 B = 0.003557 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.451271 B = 7870.356660 C = 8111.234261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.105 3.895 3 C -0.179 4.179 4 C -0.071 4.071 5 C -0.179 4.179 6 C 0.117 3.883 7 C -0.055 4.055 8 C 0.069 3.931 9 N -0.529 5.529 10 C 0.050 3.950 11 C -0.098 4.098 12 C 0.025 3.975 13 H -0.006 1.006 14 C -0.530 4.530 15 H 0.057 0.943 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.059 3.941 23 N -0.520 5.520 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.168 0.832 29 H 0.156 0.844 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.032 0.968 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.718 22.488 -5.123 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.096 4.096 5 C -0.199 4.199 6 C -0.020 4.020 7 C -0.093 4.093 8 C -0.059 4.059 9 N -0.253 5.253 10 C -0.077 4.077 11 C -0.136 4.136 12 C 0.006 3.994 13 H 0.012 0.988 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.561 5.561 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.069 4.069 23 N -0.231 5.231 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.180 0.820 28 H 0.185 0.815 29 H 0.173 0.827 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.685 21.681 -5.235 22.315 hybrid contribution -0.489 -0.636 0.574 0.986 sum 0.196 21.046 -4.661 21.557 Atomic orbital electron populations 1.20776 0.87695 1.03851 1.03650 1.21805 0.98192 0.88580 0.94688 1.22284 0.95511 0.99519 1.02568 1.22008 0.94616 0.98980 0.94020 1.22248 1.02470 0.92578 1.02589 1.21346 0.89390 0.96102 0.95177 1.20429 1.00162 0.90332 0.98372 1.22070 0.95341 0.89917 0.98600 1.63647 1.55751 1.03275 1.02664 1.23033 0.97860 0.92818 0.94019 1.22418 0.99390 0.94134 0.97703 1.19786 0.93707 0.92329 0.93608 0.98768 1.21429 1.25777 0.92985 1.16598 0.92446 1.25811 0.95125 1.01159 0.96692 1.70092 1.32687 1.20195 1.33094 0.85537 0.79051 0.78315 0.78654 1.20144 1.20877 1.18972 1.22758 0.98983 0.93917 0.91193 1.67291 1.10512 1.31204 1.14114 0.89674 0.92131 0.88261 0.81973 0.81466 0.82682 0.90806 0.87996 0.91570 0.96119 0.94993 0.89532 0.93577 0.93713 0.93018 0.91527 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 10.17 71.23 0.72 -1.04 16 2 C 0.11 2.38 6.78 42.55 0.29 2.67 16 3 C -0.18 -2.97 9.74 22.36 0.22 -2.75 16 4 C -0.07 -1.09 10.18 22.47 0.23 -0.87 16 5 C -0.18 -3.49 9.71 22.36 0.22 -3.28 16 6 C 0.12 3.07 6.18 42.54 0.26 3.33 16 7 C -0.05 -1.50 5.66 29.85 0.17 -1.33 16 8 C 0.07 2.35 4.42 86.30 0.38 2.73 16 9 N -0.53 -20.67 5.16 -885.56 -4.57 -25.24 16 10 C 0.05 2.02 5.78 86.77 0.50 2.52 16 11 C -0.10 -4.82 5.95 31.98 0.19 -4.63 16 12 C 0.03 1.33 2.77 -10.36 -0.03 1.30 16 13 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 14 C -0.53 -30.19 8.48 25.60 0.22 -29.97 16 15 H 0.06 3.19 7.53 -2.91 -0.02 3.17 16 16 C 0.01 0.62 5.36 84.65 0.45 1.07 16 17 N -0.92 -55.08 12.49 21.44 0.27 -54.81 16 18 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 C 0.06 2.64 6.45 86.64 0.56 3.20 16 23 N -0.52 -15.05 9.79 -172.08 -1.69 -16.73 16 24 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 26 H 0.10 1.12 8.08 -2.38 -0.02 1.10 16 27 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 29 H 0.16 2.25 7.95 -2.91 -0.02 2.23 16 30 H 0.07 2.11 7.49 -2.39 -0.02 2.09 16 31 H 0.10 2.40 7.87 -2.39 -0.02 2.38 16 32 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 33 H 0.02 0.79 7.65 -2.39 -0.02 0.77 16 34 H 0.03 1.30 7.62 -2.39 -0.02 1.28 16 35 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.05 2.33 8.05 -2.39 -0.02 2.31 16 37 H 0.04 2.37 7.76 -2.39 -0.02 2.36 16 38 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.07 3.00 7.63 -2.39 -0.02 2.98 16 40 H 0.04 1.56 7.55 -2.38 -0.02 1.54 16 Total: -1.00 -67.40 326.14 1.41 -65.99 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.00 Total: 11.29 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 4.38 Total: -27.04 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -5.99 Total: -96.79 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.40 1.41 -65.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399781124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.787 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds