Wall clock time and date at job start Mon Mar 30 2020 07:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38676 * 120.41823 * 2 1 4 4 C 1.38621 * 118.41711 * 179.78578 * 3 2 1 5 5 C 1.38230 * 119.16265 * 0.51209 * 4 3 2 6 6 C 1.50699 * 119.61558 * 179.74719 * 5 4 3 7 7 C 1.53004 * 109.47162 * 124.98145 * 6 5 4 8 8 N 1.46896 * 109.47258 * 179.97438 * 7 6 5 9 9 C 1.48536 * 111.00353 * 52.59961 * 8 7 6 10 10 C 1.54939 * 103.22556 * 159.71837 * 9 8 7 11 11 C 1.54593 * 102.92373 * 322.58775 * 10 9 8 12 12 H 1.08999 * 110.31178 * 263.03787 * 11 10 9 13 13 C 1.50706 * 110.39176 * 140.91634 * 11 10 9 14 14 H 1.08003 * 119.99968 * 244.23831 * 13 11 10 15 15 C 1.37872 * 120.00016 * 64.23502 * 13 11 10 16 16 N 1.31515 * 120.00060 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00058 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46886 * 60.00229 * 17 15 13 19 19 H 1.48501 * 109.47153 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47143 * 300.00025 * 17 15 13 21 21 C 1.47902 * 111.00101 * 169.99993 * 8 7 6 22 22 N 1.31844 * 120.76473 * 359.72963 * 5 4 3 23 23 C 1.31891 * 121.72676 * 359.97438 * 22 5 4 24 24 H 1.09001 * 109.46953 * 269.71855 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71452 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72083 * 1 2 3 27 27 H 1.08002 * 120.78654 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.42153 * 180.21740 * 4 3 2 29 29 H 1.09002 * 109.47447 * 244.97702 * 6 5 4 30 30 H 1.09004 * 109.47781 * 4.97974 * 6 5 4 31 31 H 1.09002 * 109.46578 * 300.00089 * 7 6 5 32 32 H 1.09004 * 109.46912 * 59.99297 * 7 6 5 33 33 H 1.08995 * 110.66906 * 278.15730 * 9 8 7 34 34 H 1.09005 * 110.66192 * 41.28370 * 9 8 7 35 35 H 1.08997 * 110.72269 * 204.22905 * 10 9 8 36 36 H 1.09004 * 110.87231 * 81.01987 * 10 9 8 37 37 H 0.97000 * 120.00460 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.91352 * 333.50641 * 21 8 7 39 39 H 1.09001 * 109.91992 * 94.60015 * 21 8 7 40 40 H 1.07994 * 119.61862 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5945 1.1475 0.0046 5 6 4.2256 -0.0824 -0.0019 6 6 5.7312 -0.1468 -0.0028 7 6 6.2058 -1.0009 1.1747 8 7 7.6734 -1.0642 1.1735 9 6 8.2651 0.2972 1.1212 10 6 9.7052 0.0784 1.6490 11 6 9.5094 -0.9787 2.7600 12 1 9.4464 -0.4956 3.7350 13 6 10.6406 -1.9744 2.7427 14 1 10.4438 -3.0113 2.5134 15 6 11.9266 -1.5616 3.0194 16 7 12.1663 -0.2989 3.2980 17 14 13.3288 -2.7956 2.9973 18 1 13.4304 -3.4052 1.6469 19 1 14.6017 -2.1045 3.3249 20 1 13.0691 -3.8580 4.0017 21 6 8.1786 -1.6758 2.4218 22 7 3.5255 -1.1996 -0.0069 23 6 2.2066 -1.1916 -0.0054 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5182 27 1 1.6890 2.1423 0.0004 28 1 4.1736 2.0591 0.0082 29 1 6.0753 -0.5920 -0.9364 30 1 6.1382 0.8600 0.0913 31 1 5.8617 -0.5557 2.1083 32 1 5.7988 -2.0077 1.0806 33 1 8.2831 0.6698 0.0971 34 1 7.7169 0.9800 1.7705 35 1 10.1090 1.0024 2.0627 36 1 10.3535 -0.3055 0.8612 37 1 13.0710 -0.0084 3.4931 38 1 7.4621 -1.5195 3.2282 39 1 8.3424 -2.7431 2.2726 40 1 1.6672 -2.1272 -0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399799120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:25 Heat of formation + Delta-G solvation = 24.159204 kcal Electronic energy + Delta-G solvation = -18721.593217 eV Core-core repulsion = 15921.423351 eV Total energy + Delta-G solvation = -2800.169866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43150 -38.09374 -34.75649 -33.21783 -32.35612 -31.21508 -28.97840 -28.16413 -26.23125 -24.26116 -23.79765 -22.54233 -21.33385 -19.71622 -19.28345 -16.82632 -16.50277 -16.20161 -15.32293 -15.08073 -14.57220 -14.42417 -14.30548 -13.86259 -13.34547 -13.05464 -12.86974 -12.83233 -12.65101 -12.11370 -11.96454 -11.79982 -11.44307 -11.01535 -10.78457 -10.66420 -10.55274 -10.48653 -10.13225 -9.90800 -9.61595 -9.46462 -9.22065 -8.82358 -8.73015 -8.34359 -7.63293 -5.95746 -3.97185 0.97000 1.15986 3.37361 3.41160 3.44723 3.64798 4.20898 4.48051 4.50762 4.60099 4.72311 4.80312 4.96079 5.19973 5.26012 5.34464 5.38495 5.41980 5.47756 5.59927 5.69636 5.84589 5.90126 5.99260 6.07052 6.09583 6.24682 6.26384 6.36713 6.45440 6.57241 6.67691 6.94670 7.19393 7.26795 7.52926 7.70938 7.87406 7.94171 7.96720 8.09181 8.50738 9.04099 9.65830 11.14434 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.057907 B = 0.003297 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.415017 B = 8490.713397 C = 8752.594124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.153 4.153 3 C -0.076 4.076 4 C -0.168 4.168 5 C 0.135 3.865 6 C -0.070 4.070 7 C 0.059 3.941 8 N -0.516 5.516 9 C 0.027 3.973 10 C -0.092 4.092 11 C 0.040 3.960 12 H 0.029 0.971 13 C -0.506 4.506 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.046 3.954 22 N -0.475 5.475 23 C 0.102 3.898 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.259 0.741 38 H 0.018 0.982 39 H 0.071 0.929 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.717 4.067 -6.771 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.155 4.155 3 C -0.102 4.102 4 C -0.187 4.187 5 C -0.003 4.003 6 C -0.108 4.108 7 C -0.070 4.070 8 N -0.240 5.240 9 C -0.101 4.101 10 C -0.131 4.131 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.544 4.544 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.082 4.082 22 N -0.184 5.184 23 C -0.056 4.056 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.089 0.911 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.968 3.074 -7.178 21.440 hybrid contribution 0.017 0.752 0.751 1.063 sum -19.951 3.826 -6.427 21.307 Atomic orbital electron populations 1.20688 0.90386 1.02913 1.02461 1.20910 0.97473 0.94388 1.02726 1.21456 0.94013 0.98075 0.96641 1.22028 0.95106 0.99160 1.02457 1.21381 0.96883 0.88264 0.93747 1.20651 0.87458 1.01559 1.01122 1.22143 0.89719 1.00022 0.95110 1.64815 1.04468 1.17528 1.37191 1.23366 0.97901 0.89625 0.99200 1.22403 0.91799 0.99727 0.99160 1.19485 0.90485 0.93495 0.94419 0.95312 1.21157 0.91780 0.94526 1.46985 0.92512 1.24979 0.98744 0.95157 0.95227 1.69958 1.20669 1.14782 1.47748 0.86674 0.81485 0.81395 0.78537 1.20241 1.21441 1.20358 1.23089 0.97201 1.00041 0.87826 1.67520 1.07936 1.31164 1.11731 1.22676 0.89856 0.97392 0.95645 0.91062 0.91533 0.91269 0.85065 0.84776 0.89122 0.90256 0.95824 0.90260 0.91791 0.95406 0.92402 0.91976 0.93101 0.96324 0.91099 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.04 36.01 0.36 -0.30 16 2 C -0.15 -1.44 5.90 -104.48 -0.62 -2.06 16 3 C -0.08 -0.72 9.86 -39.28 -0.39 -1.11 16 4 C -0.17 -1.85 9.71 -39.44 -0.38 -2.24 16 5 C 0.14 1.81 6.18 -82.59 -0.51 1.30 16 6 C -0.07 -0.99 5.27 -27.88 -0.15 -1.14 16 7 C 0.06 1.00 4.88 -3.82 -0.02 0.98 16 8 N -0.52 -10.30 5.40 -230.45 -1.24 -11.55 16 9 C 0.03 0.52 5.10 -1.90 -0.01 0.51 16 10 C -0.09 -2.19 5.75 -24.87 -0.14 -2.34 16 11 C 0.04 1.03 2.87 -90.41 -0.26 0.77 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.51 -14.18 8.38 -34.44 -0.29 -14.47 16 14 H 0.06 1.58 7.35 -52.48 -0.39 1.19 16 15 C 0.06 1.70 5.34 -17.82 -0.10 1.60 16 16 N -0.89 -25.97 12.63 55.43 0.70 -25.27 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.05 1.01 6.34 -2.75 -0.02 1.00 16 22 N -0.48 -6.62 9.88 -9.48 -0.09 -6.71 16 23 C 0.10 1.13 10.86 -17.55 -0.19 0.94 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 28 H 0.13 1.23 7.95 -52.49 -0.42 0.81 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.04 6.52 -51.93 -0.34 0.70 16 31 H 0.02 0.41 7.81 -51.93 -0.41 0.00 16 32 H 0.08 1.38 7.95 -51.93 -0.41 0.97 16 33 H 0.06 1.12 7.66 -51.93 -0.40 0.72 16 34 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 35 H 0.06 1.42 8.12 -51.93 -0.42 1.00 16 36 H 0.06 1.59 7.86 -51.93 -0.41 1.18 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 39 H 0.07 1.62 7.40 -51.93 -0.38 1.23 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -30.47 324.48 -9.94 -40.41 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.47 Total: -1.89 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.70 Total: -16.55 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.64 Total: -43.52 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.47 -9.94 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399799120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.569 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds