Wall clock time and date at job start Mon Mar 30 2020 07:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38676 * 120.41823 * 2 1 4 4 C 1.38621 * 118.41711 * 179.78578 * 3 2 1 5 5 C 1.38230 * 119.16265 * 0.51209 * 4 3 2 6 6 C 1.50699 * 119.61558 * 179.74719 * 5 4 3 7 7 C 1.53004 * 109.47162 * 124.98145 * 6 5 4 8 8 N 1.46896 * 109.47258 * 179.97438 * 7 6 5 9 9 C 1.48536 * 111.00353 * 52.59961 * 8 7 6 10 10 C 1.54939 * 103.22556 * 159.71837 * 9 8 7 11 11 C 1.54593 * 102.92373 * 322.58775 * 10 9 8 12 12 H 1.08999 * 110.31178 * 263.03787 * 11 10 9 13 13 C 1.50706 * 110.39176 * 140.91634 * 11 10 9 14 14 H 1.08003 * 119.99968 * 244.23831 * 13 11 10 15 15 C 1.37872 * 120.00016 * 64.23502 * 13 11 10 16 16 N 1.31515 * 120.00060 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00058 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46886 * 60.00229 * 17 15 13 19 19 H 1.48501 * 109.47153 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47143 * 300.00025 * 17 15 13 21 21 C 1.47902 * 111.00101 * 169.99993 * 8 7 6 22 22 N 1.31844 * 120.76473 * 359.72963 * 5 4 3 23 23 C 1.31891 * 121.72676 * 359.97438 * 22 5 4 24 24 H 1.09001 * 109.46953 * 269.71855 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71452 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72083 * 1 2 3 27 27 H 1.08002 * 120.78654 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.42153 * 180.21740 * 4 3 2 29 29 H 1.09002 * 109.47447 * 244.97702 * 6 5 4 30 30 H 1.09004 * 109.47781 * 4.97974 * 6 5 4 31 31 H 1.09002 * 109.46578 * 300.00089 * 7 6 5 32 32 H 1.09004 * 109.46912 * 59.99297 * 7 6 5 33 33 H 1.08995 * 110.66906 * 278.15730 * 9 8 7 34 34 H 1.09005 * 110.66192 * 41.28370 * 9 8 7 35 35 H 1.08997 * 110.72269 * 204.22905 * 10 9 8 36 36 H 1.09004 * 110.87231 * 81.01987 * 10 9 8 37 37 H 0.97000 * 120.00460 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.91352 * 333.50641 * 21 8 7 39 39 H 1.09001 * 109.91992 * 94.60015 * 21 8 7 40 40 H 1.07994 * 119.61862 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5945 1.1475 0.0046 5 6 4.2256 -0.0824 -0.0019 6 6 5.7312 -0.1468 -0.0028 7 6 6.2058 -1.0009 1.1747 8 7 7.6734 -1.0642 1.1735 9 6 8.2651 0.2972 1.1212 10 6 9.7052 0.0784 1.6490 11 6 9.5094 -0.9787 2.7600 12 1 9.4464 -0.4956 3.7350 13 6 10.6406 -1.9744 2.7427 14 1 10.4438 -3.0113 2.5134 15 6 11.9266 -1.5616 3.0194 16 7 12.1663 -0.2989 3.2980 17 14 13.3288 -2.7956 2.9973 18 1 13.4304 -3.4052 1.6469 19 1 14.6017 -2.1045 3.3249 20 1 13.0691 -3.8580 4.0017 21 6 8.1786 -1.6758 2.4218 22 7 3.5255 -1.1996 -0.0069 23 6 2.2066 -1.1916 -0.0054 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5182 27 1 1.6890 2.1423 0.0004 28 1 4.1736 2.0591 0.0082 29 1 6.0753 -0.5920 -0.9364 30 1 6.1382 0.8600 0.0913 31 1 5.8617 -0.5557 2.1083 32 1 5.7988 -2.0077 1.0806 33 1 8.2831 0.6698 0.0971 34 1 7.7169 0.9800 1.7705 35 1 10.1090 1.0024 2.0627 36 1 10.3535 -0.3055 0.8612 37 1 13.0710 -0.0084 3.4931 38 1 7.4621 -1.5195 3.2282 39 1 8.3424 -2.7431 2.2726 40 1 1.6672 -2.1272 -0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399799120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:25 Heat of formation + Delta-G solvation = 5.683257 kcal Electronic energy + Delta-G solvation = -18722.394394 eV Core-core repulsion = 15921.423351 eV Total energy + Delta-G solvation = -2800.971043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27172 -39.75436 -35.97883 -34.75470 -33.47145 -32.55337 -30.27582 -29.98779 -27.33194 -25.98999 -24.86750 -23.69183 -22.37694 -21.30769 -21.12765 -18.57902 -17.69303 -17.21302 -16.72870 -16.32749 -16.02092 -15.92843 -15.47979 -15.07031 -14.63690 -14.10205 -14.03984 -13.90838 -13.63168 -13.48148 -13.26084 -13.15752 -12.92729 -12.61050 -12.56028 -12.30194 -12.27604 -11.98445 -11.86971 -11.53419 -11.19937 -10.83220 -10.70062 -10.49026 -10.30402 -9.64048 -9.24720 -8.12327 -6.20906 0.15930 0.38408 1.42120 1.44119 1.51552 2.44514 2.80407 3.11167 3.19639 3.46119 3.79189 3.96421 4.02185 4.12452 4.15275 4.18808 4.24112 4.45937 4.48667 4.50383 4.60392 4.65097 4.75916 4.84869 4.89623 4.89786 4.99699 5.04782 5.11911 5.22702 5.24286 5.27422 5.37718 5.39261 5.55605 5.73908 5.83979 5.85274 6.16742 6.28968 6.39177 6.86602 7.09896 7.45446 8.97221 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.057907 B = 0.003297 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.415017 B = 8490.713397 C = 8752.594124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.146 4.146 3 C -0.079 4.079 4 C -0.170 4.170 5 C 0.107 3.893 6 C -0.060 4.060 7 C 0.067 3.933 8 N -0.524 5.524 9 C 0.041 3.959 10 C -0.086 4.086 11 C 0.031 3.969 12 H 0.000 1.000 13 C -0.527 4.527 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.056 3.944 22 N -0.509 5.509 23 C 0.083 3.917 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.152 0.848 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.027 0.973 39 H 0.060 0.940 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.582 4.648 -7.564 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.148 4.148 3 C -0.105 4.105 4 C -0.190 4.190 5 C -0.030 4.030 6 C -0.098 4.098 7 C -0.062 4.062 8 N -0.248 5.248 9 C -0.086 4.086 10 C -0.124 4.124 11 C 0.012 3.988 12 H 0.018 0.982 13 C -0.566 4.566 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.559 5.559 17 Si 0.781 3.219 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.072 4.072 22 N -0.218 5.218 23 C -0.074 4.074 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.180 0.820 28 H 0.170 0.830 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.850 3.653 -7.976 23.545 hybrid contribution 0.494 0.576 1.014 1.266 sum -21.356 4.229 -6.962 22.856 Atomic orbital electron populations 1.20764 0.87881 1.04219 1.03381 1.21298 0.99255 0.93739 1.00514 1.21868 0.93563 0.99464 0.95587 1.22246 0.96156 0.98857 1.01729 1.21283 0.96276 0.89251 0.96206 1.20508 0.88692 1.01337 0.99237 1.22086 0.87346 1.00304 0.96443 1.64775 1.06612 1.17751 1.35675 1.23263 0.94801 0.89739 1.00787 1.22181 0.94265 0.98178 0.97816 1.19471 0.91817 0.93839 0.93629 0.98209 1.21483 0.93022 0.94830 1.47225 0.92987 1.25752 1.01170 0.96967 0.94811 1.70074 1.21208 1.16361 1.48294 0.85654 0.78379 0.79170 0.78716 1.19746 1.20831 1.19635 1.22841 0.95850 0.99228 0.89290 1.67425 1.09486 1.32048 1.12867 1.23070 0.89256 0.99072 0.96046 0.90150 0.90030 0.90251 0.82033 0.83050 0.89870 0.88980 0.96061 0.91148 0.89142 0.93932 0.93962 0.94320 0.93028 0.95466 0.92132 0.81351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.04 71.24 0.72 -0.23 16 2 C -0.15 -2.38 5.90 -19.77 -0.12 -2.49 16 3 C -0.08 -1.27 9.86 22.47 0.22 -1.05 16 4 C -0.17 -3.39 9.71 22.36 0.22 -3.17 16 5 C 0.11 2.75 6.18 42.55 0.26 3.01 16 6 C -0.06 -1.62 5.27 29.85 0.16 -1.47 16 7 C 0.07 2.22 4.88 86.31 0.42 2.64 16 8 N -0.52 -20.72 5.40 -883.00 -4.76 -25.49 16 9 C 0.04 1.57 5.10 86.65 0.44 2.02 16 10 C -0.09 -4.15 5.75 31.80 0.18 -3.97 16 11 C 0.03 1.66 2.87 -10.66 -0.03 1.63 16 12 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 13 C -0.53 -30.26 8.38 25.60 0.21 -30.04 16 14 H 0.05 2.95 7.35 -2.91 -0.02 2.93 16 15 C 0.01 0.66 5.34 84.65 0.45 1.12 16 16 N -0.92 -54.52 12.63 21.45 0.27 -54.25 16 17 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C 0.06 2.51 6.34 86.45 0.55 3.06 16 22 N -0.51 -13.87 9.88 -183.89 -1.82 -15.69 16 23 C 0.08 1.73 10.86 84.67 0.92 2.65 16 24 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 26 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 27 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 28 H 0.15 2.36 7.95 -2.91 -0.02 2.34 16 29 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.09 2.21 6.52 -2.38 -0.02 2.20 16 31 H 0.02 0.72 7.81 -2.39 -0.02 0.70 16 32 H 0.07 2.46 7.95 -2.38 -0.02 2.44 16 33 H 0.09 2.99 7.66 -2.39 -0.02 2.97 16 34 H 0.04 1.51 8.00 -2.38 -0.02 1.49 16 35 H 0.04 2.13 8.12 -2.39 -0.02 2.11 16 36 H 0.04 2.01 7.86 -2.38 -0.02 1.99 16 37 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 39 H 0.06 2.82 7.40 -2.39 -0.02 2.80 16 40 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -66.69 324.48 1.32 -65.37 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.00 Total: 9.47 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 4.61 Total: -26.31 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -6.31 Total: -95.43 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.69 1.32 -65.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399799120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.054 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds