Wall clock time and date at job start Mon Mar 30 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.47044 * 2 1 4 4 H 1.08997 * 109.46902 * 305.51192 * 3 2 1 5 5 O 1.42899 * 109.46672 * 65.51377 * 3 2 1 6 6 C 1.42905 * 113.99692 * 252.39424 * 5 3 2 7 7 C 1.53009 * 109.46803 * 179.89328 * 6 5 3 8 8 C 1.50694 * 115.54623 * 159.76412 * 7 6 5 9 9 H 1.08004 * 119.99968 * 144.45583 * 8 7 6 10 10 C 1.37875 * 120.00370 * 324.45298 * 8 7 6 11 11 N 1.31518 * 119.99969 * 338.65995 * 10 8 7 12 12 Si 1.86804 * 120.00129 * 158.65117 * 10 8 7 13 13 H 1.48497 * 109.47084 * 60.00508 * 12 10 8 14 14 H 1.48495 * 109.46916 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47320 * 300.00531 * 12 10 8 16 16 C 1.52994 * 117.50015 * 14.05324 * 7 6 5 17 17 C 1.52989 * 60.00089 * 252.51340 * 16 7 6 18 18 C 1.50696 * 109.47030 * 185.51189 * 3 2 1 19 19 C 1.38246 * 119.99936 * 276.49878 * 18 3 2 20 20 C 1.38229 * 119.99722 * 179.80919 * 19 18 3 21 21 C 1.38236 * 120.00076 * 0.40082 * 20 19 18 22 22 C 1.38230 * 120.00177 * 359.85341 * 21 20 19 23 23 C 1.38229 * 120.00362 * 96.77538 * 18 3 2 24 24 H 1.08992 * 109.47406 * 60.57532 * 1 2 3 25 25 H 1.08998 * 109.46893 * 180.58383 * 1 2 3 26 26 H 1.09004 * 109.46897 * 300.57375 * 1 2 3 27 27 H 1.09000 * 109.46959 * 240.00612 * 2 1 3 28 28 H 1.09001 * 109.47810 * 120.00137 * 2 1 3 29 29 H 1.08997 * 109.47245 * 299.88817 * 6 5 3 30 30 H 1.08996 * 109.47040 * 59.89272 * 6 5 3 31 31 H 0.97002 * 120.00060 * 185.01563 * 11 10 8 32 32 H 1.09005 * 117.50096 * 0.02562 * 16 7 6 33 33 H 1.08999 * 117.50099 * 145.01800 * 16 7 6 34 34 H 1.08999 * 117.50094 * 252.51250 * 17 16 7 35 35 H 1.09003 * 117.51810 * 107.48334 * 17 16 7 36 36 H 1.07993 * 119.99750 * 359.97438 * 19 18 3 37 37 H 1.07996 * 120.00001 * 180.23244 * 20 19 18 38 38 H 1.08005 * 120.00005 * 179.83413 * 21 20 19 39 39 H 1.08004 * 119.99957 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.99762 * 359.97438 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5983 1.9841 -0.8365 5 8 1.6723 2.0777 1.2261 6 6 0.6305 3.0463 1.0893 7 6 0.3187 3.6566 2.4573 8 6 -0.3869 4.9879 2.4294 9 1 -1.1217 5.2255 3.1844 10 6 -0.0943 5.9027 1.4402 11 7 1.0463 5.8259 0.7900 12 14 -1.3180 7.2511 1.0234 13 1 -1.5607 8.0883 2.2256 14 1 -0.7699 8.0971 -0.0670 15 1 -2.5965 6.6396 0.5798 16 6 1.3229 3.4122 3.5854 17 6 -0.0291 2.6964 3.5964 18 6 3.5408 1.4448 -0.1365 19 6 4.3367 1.2723 0.9807 20 6 5.7132 1.2703 0.8549 21 6 6.2941 1.4492 -0.3867 22 6 5.4984 1.6269 -1.5030 23 6 4.1217 1.6250 -1.3777 24 1 -0.3634 0.5048 -0.8950 25 1 -0.3633 -1.0276 0.0105 26 1 -0.3633 0.5227 0.8848 27 1 1.8933 -0.5137 -0.8900 28 1 1.8935 -0.5138 0.8899 29 1 0.9524 3.8320 0.4058 30 1 -0.2638 2.5647 0.6939 31 1 1.2844 6.5107 0.1456 32 1 2.2060 2.8170 3.3529 33 1 1.4736 4.2145 4.3076 34 1 -0.7681 3.0277 4.3260 35 1 -0.0362 1.6299 3.3713 36 1 3.8829 1.1364 1.9511 37 1 6.3350 1.1318 1.7270 38 1 7.3697 1.4504 -0.4846 39 1 5.9522 1.7671 -2.4729 40 1 3.5000 1.7638 -2.2499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403070437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:48 Heat of formation + Delta-G solvation = -5.416206 kcal Electronic energy + Delta-G solvation = -19767.234885 eV Core-core repulsion = 16933.489782 eV Total energy + Delta-G solvation = -2833.745103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.27239 -37.58206 -35.71578 -32.71951 -32.18761 -30.79423 -30.59705 -26.54782 -25.69956 -24.41109 -22.28166 -21.91689 -20.99839 -20.26142 -18.99651 -16.83178 -16.16299 -15.88986 -15.18093 -14.81669 -14.44300 -14.18495 -13.95826 -13.49049 -13.24252 -13.08991 -12.82617 -12.42726 -12.13053 -11.72427 -11.66072 -11.25157 -11.05705 -10.99603 -10.80611 -10.77396 -10.63633 -10.37443 -10.23897 -9.99801 -9.32995 -9.07344 -8.84779 -8.62764 -8.59011 -8.39904 -7.74588 -6.09928 -4.07352 1.62294 1.70175 3.26007 3.32542 3.36176 4.05875 4.32837 4.49307 4.96243 5.07653 5.19599 5.21365 5.38698 5.39884 5.46680 5.61428 5.63149 5.78501 5.89940 5.95939 6.11326 6.15228 6.25862 6.31111 6.34545 6.39513 6.49077 6.55878 6.64944 6.71740 6.78260 6.84978 6.89571 6.97979 7.18369 7.28678 7.36501 7.55271 7.56325 7.95443 8.17244 8.53886 8.85480 9.46694 10.90876 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.006161 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.070635 B = 4543.623118 C = 4937.829410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.128 3.872 4 H 0.065 0.935 5 O -0.375 6.375 6 C 0.086 3.914 7 C 0.054 3.946 8 C -0.496 4.496 9 H 0.065 0.935 10 C 0.072 3.928 11 N -0.867 5.867 12 Si 0.887 3.113 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.187 4.187 17 C -0.208 4.208 18 C -0.077 4.077 19 C -0.087 4.087 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.115 4.115 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.693 -9.967 -4.737 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C 0.070 3.930 4 H 0.083 0.917 5 O -0.294 6.294 6 C 0.010 3.990 7 C 0.053 3.947 8 C -0.533 4.533 9 H 0.083 0.917 10 C -0.132 4.132 11 N -0.503 5.503 12 Si 0.714 3.286 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.225 4.225 17 C -0.246 4.246 18 C -0.077 4.077 19 C -0.105 4.105 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.133 4.133 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.852 -9.935 -4.761 12.475 hybrid contribution -0.649 0.877 -0.392 1.160 sum 5.203 -9.057 -5.154 11.648 Atomic orbital electron populations 1.21801 0.95531 1.01131 1.02579 1.21890 0.96333 0.96486 1.01924 1.20754 0.89647 0.93070 0.89571 0.91735 1.87858 1.56816 1.56514 1.28228 1.22482 0.86782 0.89471 1.00245 1.18888 0.97131 0.93253 0.85417 1.20440 1.22684 0.98321 1.11884 0.91733 1.25012 0.94769 0.97558 0.95888 1.69940 1.19519 1.33943 1.26855 0.86725 0.82124 0.81404 0.78309 1.20104 1.21201 1.19967 1.22780 0.92081 1.01935 1.05710 1.22847 0.99574 0.96656 1.05502 1.20101 0.95715 0.98523 0.93356 1.21027 0.92990 0.97575 0.98895 1.21140 0.95064 1.00933 0.97266 1.21061 0.99333 1.01192 0.93053 1.21005 0.93666 1.01327 0.98418 1.20968 0.94905 1.00478 0.96937 0.93084 0.93165 0.91462 0.91898 0.91431 0.88309 0.95989 0.92611 0.90684 0.91263 0.91234 0.91348 0.85527 0.86444 0.86668 0.86516 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.25 37.16 0.34 -1.87 16 2 C -0.13 -1.90 5.62 -26.73 -0.15 -2.05 16 3 C 0.13 2.26 2.45 -27.88 -0.07 2.19 16 4 H 0.06 1.16 7.54 -51.93 -0.39 0.76 16 5 O -0.37 -7.93 7.19 -35.23 -0.25 -8.19 16 6 C 0.09 2.03 5.17 37.16 0.19 2.22 16 7 C 0.05 1.37 2.32 -155.67 -0.36 1.00 16 8 C -0.50 -13.64 8.98 -34.44 -0.31 -13.95 16 9 H 0.06 1.77 7.90 -52.48 -0.41 1.35 16 10 C 0.07 1.93 5.05 -17.82 -0.09 1.84 16 11 N -0.87 -24.12 11.09 55.43 0.61 -23.50 16 12 Si 0.89 20.62 29.59 -169.99 -5.03 15.59 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 C -0.19 -4.53 9.59 -26.74 -0.26 -4.79 16 17 C -0.21 -4.75 9.82 -26.74 -0.26 -5.01 16 18 C -0.08 -1.29 4.99 -104.62 -0.52 -1.81 16 19 C -0.09 -1.44 9.35 -39.58 -0.37 -1.81 16 20 C -0.13 -1.81 10.05 -39.59 -0.40 -2.20 16 21 C -0.13 -1.70 10.05 -39.59 -0.40 -2.10 16 22 C -0.13 -1.70 10.05 -39.59 -0.40 -2.09 16 23 C -0.11 -1.72 9.67 -39.59 -0.38 -2.10 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.11 6.65 -51.93 -0.35 0.77 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.10 2.61 5.38 -51.93 -0.28 2.33 16 30 H 0.02 0.50 6.64 -51.93 -0.34 0.15 16 31 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 32 H 0.07 1.78 7.14 -51.93 -0.37 1.41 16 33 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.13 2.16 7.67 -52.49 -0.40 1.76 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -28.41 328.08 -9.49 -37.90 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.34 Total: 5.79 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -3.43 Total: -32.53 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.61 Total: -23.50 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.25 Total: -8.19 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.41 -9.49 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403070437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.481 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds