Wall clock time and date at job start Mon Mar 30 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.47044 * 2 1 4 4 H 1.08997 * 109.46902 * 305.51192 * 3 2 1 5 5 O 1.42899 * 109.46672 * 65.51377 * 3 2 1 6 6 C 1.42905 * 113.99692 * 252.39424 * 5 3 2 7 7 C 1.53009 * 109.46803 * 179.89328 * 6 5 3 8 8 C 1.50694 * 115.54623 * 159.76412 * 7 6 5 9 9 H 1.08004 * 119.99968 * 144.45583 * 8 7 6 10 10 C 1.37875 * 120.00370 * 324.45298 * 8 7 6 11 11 N 1.31518 * 119.99969 * 338.65995 * 10 8 7 12 12 Si 1.86804 * 120.00129 * 158.65117 * 10 8 7 13 13 H 1.48497 * 109.47084 * 60.00508 * 12 10 8 14 14 H 1.48495 * 109.46916 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47320 * 300.00531 * 12 10 8 16 16 C 1.52994 * 117.50015 * 14.05324 * 7 6 5 17 17 C 1.52989 * 60.00089 * 252.51340 * 16 7 6 18 18 C 1.50696 * 109.47030 * 185.51189 * 3 2 1 19 19 C 1.38246 * 119.99936 * 276.49878 * 18 3 2 20 20 C 1.38229 * 119.99722 * 179.80919 * 19 18 3 21 21 C 1.38236 * 120.00076 * 0.40082 * 20 19 18 22 22 C 1.38230 * 120.00177 * 359.85341 * 21 20 19 23 23 C 1.38229 * 120.00362 * 96.77538 * 18 3 2 24 24 H 1.08992 * 109.47406 * 60.57532 * 1 2 3 25 25 H 1.08998 * 109.46893 * 180.58383 * 1 2 3 26 26 H 1.09004 * 109.46897 * 300.57375 * 1 2 3 27 27 H 1.09000 * 109.46959 * 240.00612 * 2 1 3 28 28 H 1.09001 * 109.47810 * 120.00137 * 2 1 3 29 29 H 1.08997 * 109.47245 * 299.88817 * 6 5 3 30 30 H 1.08996 * 109.47040 * 59.89272 * 6 5 3 31 31 H 0.97002 * 120.00060 * 185.01563 * 11 10 8 32 32 H 1.09005 * 117.50096 * 0.02562 * 16 7 6 33 33 H 1.08999 * 117.50099 * 145.01800 * 16 7 6 34 34 H 1.08999 * 117.50094 * 252.51250 * 17 16 7 35 35 H 1.09003 * 117.51810 * 107.48334 * 17 16 7 36 36 H 1.07993 * 119.99750 * 359.97438 * 19 18 3 37 37 H 1.07996 * 120.00001 * 180.23244 * 20 19 18 38 38 H 1.08005 * 120.00005 * 179.83413 * 21 20 19 39 39 H 1.08004 * 119.99957 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.99762 * 359.97438 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5983 1.9841 -0.8365 5 8 1.6723 2.0777 1.2261 6 6 0.6305 3.0463 1.0893 7 6 0.3187 3.6566 2.4573 8 6 -0.3869 4.9879 2.4294 9 1 -1.1217 5.2255 3.1844 10 6 -0.0943 5.9027 1.4402 11 7 1.0463 5.8259 0.7900 12 14 -1.3180 7.2511 1.0234 13 1 -1.5607 8.0883 2.2256 14 1 -0.7699 8.0971 -0.0670 15 1 -2.5965 6.6396 0.5798 16 6 1.3229 3.4122 3.5854 17 6 -0.0291 2.6964 3.5964 18 6 3.5408 1.4448 -0.1365 19 6 4.3367 1.2723 0.9807 20 6 5.7132 1.2703 0.8549 21 6 6.2941 1.4492 -0.3867 22 6 5.4984 1.6269 -1.5030 23 6 4.1217 1.6250 -1.3777 24 1 -0.3634 0.5048 -0.8950 25 1 -0.3633 -1.0276 0.0105 26 1 -0.3633 0.5227 0.8848 27 1 1.8933 -0.5137 -0.8900 28 1 1.8935 -0.5138 0.8899 29 1 0.9524 3.8320 0.4058 30 1 -0.2638 2.5647 0.6939 31 1 1.2844 6.5107 0.1456 32 1 2.2060 2.8170 3.3529 33 1 1.4736 4.2145 4.3076 34 1 -0.7681 3.0277 4.3260 35 1 -0.0362 1.6299 3.3713 36 1 3.8829 1.1364 1.9511 37 1 6.3350 1.1318 1.7270 38 1 7.3697 1.4504 -0.4846 39 1 5.9522 1.7671 -2.4729 40 1 3.5000 1.7638 -2.2499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403070437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:47 Heat of formation + Delta-G solvation = -17.851109 kcal Electronic energy + Delta-G solvation = -19767.774103 eV Core-core repulsion = 16933.489782 eV Total energy + Delta-G solvation = -2834.284321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54195 -39.16032 -37.40172 -34.31450 -34.05300 -31.94586 -31.72089 -28.31591 -27.42869 -26.06421 -23.43427 -23.07909 -22.89170 -21.55216 -20.95163 -18.36720 -17.78607 -17.38643 -16.74178 -16.33338 -16.12481 -15.53235 -15.37519 -15.06251 -14.59957 -14.39981 -14.19736 -13.82490 -13.67161 -13.37809 -12.96409 -12.84084 -12.77131 -12.55595 -12.41515 -12.28728 -12.00544 -11.89672 -11.85620 -11.54223 -11.26567 -11.00130 -10.59184 -10.48781 -9.76330 -9.66714 -9.57103 -8.14160 -6.19265 0.48250 0.56450 1.40796 1.44545 1.52357 2.39180 2.81868 2.93130 3.09938 3.65238 3.83128 4.03052 4.12884 4.21484 4.25091 4.32670 4.40316 4.42344 4.56203 4.63521 4.67507 4.76665 4.78978 4.92610 4.97590 4.98510 5.03347 5.13328 5.17740 5.22511 5.26190 5.37899 5.45594 5.54130 5.61507 5.63578 5.66448 5.75226 5.94473 6.17352 6.31431 6.69231 6.78866 7.37635 8.85542 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.006161 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.070635 B = 4543.623118 C = 4937.829410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.123 3.877 4 H 0.055 0.945 5 O -0.384 6.384 6 C 0.103 3.897 7 C 0.022 3.978 8 C -0.523 4.523 9 H 0.057 0.943 10 C 0.030 3.970 11 N -0.892 5.892 12 Si 0.951 3.049 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.268 1.268 16 C -0.189 4.189 17 C -0.183 4.183 18 C -0.100 4.100 19 C -0.111 4.111 20 C -0.131 4.131 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.265 0.735 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 -10.607 -5.769 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.065 3.935 4 H 0.073 0.927 5 O -0.304 6.304 6 C 0.027 3.973 7 C 0.021 3.979 8 C -0.560 4.560 9 H 0.076 0.924 10 C -0.171 4.171 11 N -0.528 5.528 12 Si 0.776 3.224 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.193 1.193 16 C -0.227 4.227 17 C -0.221 4.221 18 C -0.100 4.100 19 C -0.129 4.129 20 C -0.149 4.149 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.459 -10.589 -5.787 13.687 hybrid contribution -0.740 1.038 -0.079 1.277 sum 5.718 -9.551 -5.866 12.583 Atomic orbital electron populations 1.21777 0.95230 1.02344 1.01419 1.21829 0.96480 0.94639 1.02803 1.20980 0.90711 0.94143 0.87685 0.92695 1.87817 1.56140 1.56057 1.30389 1.22054 0.87430 0.89216 0.98617 1.19097 0.98198 0.93742 0.86839 1.20695 1.23094 0.99697 1.12493 0.92439 1.25709 0.96059 0.99844 0.95519 1.70067 1.20849 1.34751 1.27139 0.85724 0.79900 0.78708 0.78068 1.19743 1.20671 1.19285 1.22681 0.92765 1.02038 1.05175 1.22814 0.98382 0.96994 1.03868 1.20143 0.95109 1.00309 0.94450 1.21039 0.94301 0.99387 0.98185 1.21422 0.94292 1.00328 0.98859 1.21482 1.01101 0.99540 0.92285 1.21412 0.92997 0.99810 1.00024 1.21205 0.96135 1.00572 0.96599 0.92882 0.90713 0.93961 0.89671 0.91734 0.91176 0.95665 0.92581 0.90662 0.92269 0.90580 0.89804 0.87225 0.84464 0.83384 0.83452 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.25 71.98 0.67 -3.56 16 2 C -0.12 -3.47 5.62 30.60 0.17 -3.30 16 3 C 0.12 4.38 2.45 29.85 0.07 4.45 16 4 H 0.05 2.02 7.54 -2.39 -0.02 2.01 16 5 O -0.38 -16.70 7.19 -148.98 -1.07 -17.77 16 6 C 0.10 5.01 5.17 71.99 0.37 5.39 16 7 C 0.02 1.12 2.32 -52.93 -0.12 1.00 16 8 C -0.52 -29.21 8.98 25.60 0.23 -28.98 16 9 H 0.06 3.19 7.90 -2.91 -0.02 3.17 16 10 C 0.03 1.66 5.05 84.65 0.43 2.09 16 11 N -0.89 -50.55 11.09 21.45 0.24 -50.32 16 12 Si 0.95 42.55 29.59 68.60 2.03 44.58 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 14 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 C -0.19 -9.30 9.59 30.59 0.29 -9.01 16 17 C -0.18 -8.34 9.82 30.59 0.30 -8.04 16 18 C -0.10 -3.36 4.99 -19.87 -0.10 -3.46 16 19 C -0.11 -3.69 9.35 22.27 0.21 -3.49 16 20 C -0.13 -3.59 10.05 22.27 0.22 -3.36 16 21 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 22 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 23 C -0.13 -3.67 9.67 22.27 0.22 -3.46 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.04 1.39 6.65 -2.38 -0.02 1.37 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 3.84 5.38 -2.39 -0.01 3.83 16 30 H 0.03 1.18 6.64 -2.39 -0.02 1.16 16 31 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 32 H 0.07 3.66 7.14 -2.38 -0.02 3.64 16 33 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 35 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.11 3.90 7.67 -2.91 -0.02 3.88 16 37 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 38 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -61.36 328.08 5.60 -55.76 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.99 Total: 27.05 kcal Atomic # 6 Polarization: -62.71 SS G_CDS: 3.41 Total: -59.30 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.24 Total: -50.32 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.07 Total: -17.77 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -61.36 5.60 -55.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403070437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.908 kcal (2) G-P(sol) polarization free energy of solvation -61.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds