Wall clock time and date at job start Mon Mar 30 2020 07:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38677 * 120.42153 * 2 1 4 4 C 1.38630 * 118.42325 * 180.24424 * 3 2 1 5 5 C 1.38230 * 119.15821 * 359.74905 * 4 3 2 6 6 N 1.31859 * 120.76658 * 0.02562 * 5 4 3 7 7 C 1.31887 * 121.72056 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.61187 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 90.00011 * 8 7 6 10 10 N 1.46894 * 109.47515 * 179.97438 * 9 8 7 11 11 C 1.47848 * 111.00001 * 290.84537 * 10 9 8 12 12 C 1.54910 * 104.79561 * 213.63301 * 11 10 9 13 13 C 1.55138 * 101.65178 * 37.06877 * 12 11 10 14 14 H 1.09003 * 110.71011 * 82.73028 * 13 12 11 15 15 C 1.50707 * 110.85368 * 205.89469 * 13 12 11 16 16 H 1.07998 * 119.99755 * 113.69353 * 15 13 12 17 17 C 1.37873 * 119.99669 * 293.68181 * 15 13 12 18 18 N 1.31512 * 120.00567 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99679 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47350 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47014 * 120.00439 * 19 17 15 22 22 H 1.48501 * 109.47237 * 240.00242 * 19 17 15 23 23 C 1.47440 * 111.00292 * 170.00127 * 10 9 8 24 24 H 1.08997 * 109.46970 * 270.25700 * 1 2 3 25 25 H 1.08999 * 109.47210 * 30.25287 * 1 2 3 26 26 H 1.09000 * 109.47165 * 150.25387 * 1 2 3 27 27 H 1.08004 * 120.78803 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.42090 * 179.72675 * 4 3 2 29 29 H 1.08002 * 119.61368 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47060 * 210.00067 * 8 7 6 31 31 H 1.09001 * 109.47380 * 330.00154 * 8 7 6 32 32 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 33 33 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 34 34 H 1.08997 * 110.37280 * 332.45799 * 11 10 9 35 35 H 1.08999 * 110.36961 * 94.80867 * 11 10 9 36 36 H 1.08999 * 110.99079 * 278.98208 * 12 11 10 37 37 H 1.08994 * 111.02258 * 155.17751 * 12 11 10 38 38 H 0.96994 * 120.00602 * 179.97438 * 18 17 15 39 39 H 1.09009 * 109.88750 * 242.66203 * 23 10 9 40 40 H 1.09000 * 109.89064 * 3.68759 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1475 -0.0052 5 6 4.2256 -0.0824 -0.0049 6 7 3.5255 -1.1997 -0.0002 7 6 2.2066 -1.1916 0.0048 8 6 1.4539 -2.4972 0.0094 9 6 1.2047 -2.9371 1.4534 10 7 0.4705 -4.2094 1.4580 11 6 -0.9135 -4.0242 0.9720 12 6 -1.7560 -5.0429 1.7796 13 6 -1.0696 -4.9851 3.1696 14 1 -1.4442 -4.1417 3.7497 15 6 -1.2691 -6.2764 3.9206 16 1 -0.4230 -6.9121 4.1358 17 6 -2.5317 -6.6460 4.3331 18 7 -3.5621 -5.8720 4.0708 19 14 -2.7788 -8.2462 5.2645 20 1 -1.4707 -8.9291 5.4313 21 1 -3.3595 -7.9568 6.6003 22 1 -3.7027 -9.1247 4.5030 23 6 0.4187 -4.7847 2.8145 24 1 -0.3633 0.0046 1.0276 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 1.6890 2.1424 0.0004 28 1 4.1736 2.0592 -0.0098 29 1 5.3047 -0.1286 -0.0085 30 1 0.4995 -2.3681 -0.5010 31 1 2.0415 -3.2572 -0.5057 32 1 2.1592 -3.0662 1.9638 33 1 0.6172 -2.1771 1.9685 34 1 -1.2531 -3.0079 1.1720 35 1 -0.9737 -4.2426 -0.0942 36 1 -1.6805 -6.0410 1.3481 37 1 -2.7966 -4.7255 1.8444 38 1 -4.4504 -6.1321 4.3607 39 1 0.9361 -5.7441 2.8303 40 1 0.8834 -4.1013 3.5252 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404895627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:27 Heat of formation + Delta-G solvation = 7.148890 kcal Electronic energy + Delta-G solvation = -19102.546892 eV Core-core repulsion = 16301.639403 eV Total energy + Delta-G solvation = -2800.907488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33714 -39.73972 -35.83339 -34.66012 -34.14728 -32.23550 -30.02809 -29.58013 -28.01347 -26.32119 -24.63979 -23.27618 -22.33116 -21.45440 -21.26441 -18.58630 -17.73480 -17.38069 -16.84501 -16.43571 -16.04077 -15.49858 -15.41434 -15.20818 -14.41540 -14.18029 -13.98404 -13.83285 -13.74629 -13.55373 -13.48868 -13.17439 -12.98763 -12.67715 -12.56539 -12.34983 -12.26303 -12.01678 -11.73128 -11.47780 -11.19772 -10.90427 -10.61884 -10.49332 -10.32052 -9.69097 -9.16445 -8.14502 -6.23670 0.17518 0.38095 1.40429 1.42412 1.54182 2.43060 2.79764 3.09569 3.17012 3.52480 3.80901 3.96797 3.98172 4.12495 4.15464 4.16316 4.27787 4.43971 4.52424 4.54911 4.59657 4.62978 4.73771 4.77593 4.82983 4.92202 4.96402 4.99570 5.08626 5.25594 5.26889 5.30090 5.37167 5.41836 5.58169 5.72831 5.85398 5.87666 6.15510 6.27995 6.35906 6.84634 7.11031 7.43629 8.95319 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.044368 B = 0.003762 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.931844 B = 7441.817388 C = 7716.828829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.142 4.142 3 C -0.081 4.081 4 C -0.170 4.170 5 C 0.077 3.923 6 N -0.511 5.511 7 C 0.111 3.889 8 C -0.058 4.058 9 C 0.072 3.928 10 N -0.534 5.534 11 C 0.049 3.951 12 C -0.098 4.098 13 C 0.026 3.974 14 H 0.000 1.000 15 C -0.530 4.530 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.059 3.941 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.161 0.839 28 H 0.166 0.834 29 H 0.175 0.825 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.211 15.483 -9.769 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.143 4.143 3 C -0.107 4.107 4 C -0.189 4.189 5 C -0.080 4.080 6 N -0.220 5.220 7 C -0.027 4.027 8 C -0.096 4.096 9 C -0.057 4.057 10 N -0.258 5.258 11 C -0.078 4.078 12 C -0.137 4.137 13 C 0.007 3.993 14 H 0.018 0.982 15 C -0.568 4.568 16 H 0.072 0.928 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.781 3.219 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.069 4.069 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.178 0.822 28 H 0.184 0.816 29 H 0.192 0.808 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.751 14.354 -10.076 20.571 hybrid contribution -1.145 0.384 1.304 1.778 sum 9.605 14.738 -8.772 19.658 Atomic orbital electron populations 1.20869 0.89288 1.04123 1.02891 1.20990 0.98496 0.93671 1.01193 1.21883 0.94660 0.98505 0.95646 1.22484 0.95421 1.00205 1.00802 1.23226 1.01373 0.87794 0.95632 1.67478 1.08333 1.33244 1.12955 1.21143 0.89826 0.95171 0.96528 1.20415 0.99841 0.92618 0.96712 1.22053 0.97646 0.89728 0.96296 1.63584 1.14987 1.24382 1.22818 1.23077 0.87319 0.97774 0.99637 1.22418 0.97989 0.97118 0.96192 1.19784 0.90825 0.95359 0.93339 0.98195 1.21455 0.93462 1.06011 1.35873 0.92807 1.25749 0.95875 1.00167 0.96755 1.70075 0.99443 1.38735 1.47555 0.85537 0.78218 0.79837 0.78265 1.19170 1.20606 1.20512 1.22754 0.97932 0.98320 0.87852 0.91189 0.89278 0.90953 0.82158 0.81616 0.80770 0.88966 0.90482 0.92074 0.95387 0.93726 0.89629 0.94018 0.93312 0.93001 0.92125 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.62 71.24 0.69 -1.42 16 2 C -0.14 -3.06 5.90 -19.77 -0.12 -3.18 16 3 C -0.08 -1.37 9.86 22.47 0.22 -1.15 16 4 C -0.17 -2.65 10.11 22.36 0.23 -2.43 16 5 C 0.08 1.55 11.18 84.69 0.95 2.50 16 6 N -0.51 -13.94 10.27 -183.88 -1.89 -15.83 16 7 C 0.11 2.93 6.03 42.54 0.26 3.19 16 8 C -0.06 -1.61 5.15 29.85 0.15 -1.45 16 9 C 0.07 2.33 4.55 86.30 0.39 2.73 16 10 N -0.53 -20.36 5.16 -885.55 -4.57 -24.93 16 11 C 0.05 1.84 5.78 86.77 0.50 2.34 16 12 C -0.10 -4.66 5.95 31.98 0.19 -4.47 16 13 C 0.03 1.35 2.77 -10.36 -0.03 1.33 16 14 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 15 C -0.53 -29.82 8.48 25.60 0.22 -29.60 16 16 H 0.05 3.00 7.53 -2.91 -0.02 2.97 16 17 C 0.01 0.75 5.36 84.65 0.45 1.21 16 18 N -0.92 -53.61 12.49 21.45 0.27 -53.34 16 19 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 C 0.06 2.60 6.45 86.65 0.56 3.16 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 26 H 0.07 1.38 5.95 -2.39 -0.01 1.37 16 27 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 28 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 29 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.09 2.32 5.28 -2.39 -0.01 2.31 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.09 8.03 -2.39 -0.02 2.07 16 33 H 0.03 0.92 7.85 -2.39 -0.02 0.90 16 34 H 0.04 1.56 7.62 -2.39 -0.02 1.55 16 35 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.04 2.06 8.05 -2.39 -0.02 2.04 16 37 H 0.05 2.46 7.76 -2.39 -0.02 2.45 16 38 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.06 2.77 7.64 -2.38 -0.02 2.75 16 40 H 0.04 1.59 7.55 -2.39 -0.02 1.57 16 Total: -1.00 -65.16 322.38 1.50 -63.66 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.00 Total: 11.53 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 4.66 Total: -27.26 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -6.19 Total: -94.09 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -65.16 1.50 -63.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404895627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.812 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds