Wall clock time and date at job start Mon Mar 30 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38664 * 120.42408 * 2 1 4 4 C 1.38619 * 118.42386 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.16418 * 359.97438 * 4 3 2 6 6 N 1.31857 * 120.75974 * 359.73259 * 5 4 3 7 7 C 1.31886 * 121.72359 * 0.55368 * 6 5 4 8 8 C 1.50700 * 119.61507 * 179.70965 * 7 6 5 9 9 C 1.52996 * 109.47588 * 269.73351 * 8 7 6 10 10 N 1.46904 * 109.47327 * 179.97438 * 9 8 7 11 11 C 1.47843 * 110.99640 * 69.15576 * 10 9 8 12 12 C 1.54916 * 104.79337 * 146.36598 * 11 10 9 13 13 C 1.55398 * 101.74107 * 323.02060 * 12 11 10 14 14 H 1.09005 * 110.67856 * 277.17709 * 13 12 11 15 15 C 1.50693 * 110.84773 * 153.86113 * 13 12 11 16 16 H 1.08003 * 120.00166 * 246.46481 * 15 13 12 17 17 C 1.37883 * 119.99850 * 66.46355 * 15 13 12 18 18 N 1.31508 * 119.99898 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99869 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47362 * 90.00177 * 19 17 15 21 21 H 1.48504 * 109.46872 * 209.99961 * 19 17 15 22 22 H 1.48499 * 109.47348 * 329.99947 * 19 17 15 23 23 C 1.47439 * 111.00045 * 190.00285 * 10 9 8 24 24 H 1.09000 * 109.47568 * 270.02599 * 1 2 3 25 25 H 1.09002 * 109.46726 * 30.03011 * 1 2 3 26 26 H 1.09001 * 109.47171 * 150.01995 * 1 2 3 27 27 H 1.08010 * 120.78614 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.42225 * 180.02562 * 4 3 2 29 29 H 1.07996 * 119.61860 * 180.02562 * 5 4 3 30 30 H 1.08998 * 109.47022 * 149.73294 * 8 7 6 31 31 H 1.09000 * 109.47058 * 29.74094 * 8 7 6 32 32 H 1.09006 * 109.47033 * 60.00261 * 9 8 7 33 33 H 1.08995 * 109.47422 * 299.99996 * 9 8 7 34 34 H 1.08996 * 110.37823 * 265.19398 * 11 10 9 35 35 H 1.09002 * 110.37399 * 27.53914 * 11 10 9 36 36 H 1.08995 * 110.98807 * 81.01940 * 12 11 10 37 37 H 1.08997 * 110.99078 * 204.83973 * 12 11 10 38 38 H 0.97004 * 120.00131 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88998 * 356.14887 * 23 10 9 40 40 H 1.09003 * 109.88733 * 117.17548 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1473 0.0005 5 6 4.2256 -0.0825 0.0016 6 7 3.5254 -1.1998 0.0074 7 6 2.2066 -1.1917 0.0015 8 6 1.4538 -2.4972 0.0019 9 6 1.1996 -2.9399 -1.4404 10 7 0.4664 -4.2129 -1.4399 11 6 -0.9159 -4.0279 -0.9492 12 6 -1.7605 -5.0488 -1.7518 13 6 -1.0783 -4.9962 -3.1470 14 1 -1.4563 -4.1556 -3.7289 15 6 -1.2762 -6.2923 -3.8899 16 1 -0.4291 -6.9277 -4.1025 17 6 -2.5387 -6.6669 -4.2984 18 7 -3.5700 -5.8930 -4.0400 19 14 -2.7841 -8.2739 -5.2187 20 1 -3.0447 -9.3661 -4.2469 21 1 -3.9414 -8.1447 -6.1402 22 1 -1.5614 -8.5883 -6.0006 23 6 0.4102 -4.7908 -2.7952 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6890 2.1423 -0.0004 28 1 4.1736 2.0590 0.0010 29 1 5.3046 -0.1287 0.0025 30 1 0.5012 -2.3672 0.5153 31 1 2.0431 -3.2562 0.5165 32 1 2.1524 -3.0701 -1.9538 33 1 0.6103 -2.1810 -1.9549 34 1 -0.9721 -4.2443 0.1176 35 1 -1.2570 -3.0122 -1.1498 36 1 -1.6827 -6.0460 -1.3188 37 1 -2.8015 -4.7316 -1.8133 38 1 -4.4583 -6.1567 -4.3270 39 1 0.8691 -4.1069 -3.5092 40 1 0.9308 -5.7484 -2.8118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404895629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:30 Heat of formation + Delta-G solvation = 23.475873 kcal Electronic energy + Delta-G solvation = -19103.036990 eV Core-core repulsion = 16302.837493 eV Total energy + Delta-G solvation = -2800.199497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46770 -38.10200 -34.48802 -33.52515 -32.68098 -30.75435 -28.30270 -28.23670 -27.09459 -24.47292 -23.30521 -22.34447 -21.26431 -19.80832 -19.47882 -16.84711 -16.62918 -16.35297 -15.36358 -14.97706 -14.53872 -14.23372 -14.15186 -13.98977 -13.25202 -12.90006 -12.84882 -12.64931 -12.43770 -12.33447 -12.05751 -11.70442 -11.36925 -11.03218 -11.00463 -10.65383 -10.63784 -10.50077 -10.17950 -9.80088 -9.63020 -9.46269 -9.26183 -8.86298 -8.80421 -8.37761 -7.57201 -6.01524 -4.03636 1.00605 1.18532 3.32045 3.38535 3.42153 3.67065 4.21218 4.44735 4.55149 4.67963 4.84185 4.88280 4.93125 5.29208 5.30462 5.35505 5.46009 5.51155 5.53852 5.61786 5.85555 5.86967 5.91966 5.96336 6.07334 6.16440 6.22942 6.32094 6.35009 6.42558 6.58629 6.68135 6.90458 7.17460 7.20174 7.60609 7.62491 7.83767 7.91751 7.96808 8.00942 8.43472 8.98227 9.60251 11.08666 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.044411 B = 0.003760 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.317470 B = 7444.779624 C = 7719.864759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.133 4.133 3 C -0.078 4.078 4 C -0.180 4.180 5 C 0.092 3.908 6 N -0.478 5.478 7 C 0.139 3.861 8 C -0.068 4.068 9 C 0.064 3.936 10 N -0.532 5.532 11 C 0.036 3.964 12 C -0.106 4.106 13 C 0.035 3.965 14 H 0.030 0.970 15 C -0.509 4.509 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.048 3.952 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.153 0.847 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.259 0.741 39 H 0.032 0.968 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 14.061 9.004 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 C -0.104 4.104 4 C -0.200 4.200 5 C -0.065 4.065 6 N -0.186 5.186 7 C 0.000 4.000 8 C -0.107 4.107 9 C -0.066 4.066 10 N -0.256 5.256 11 C -0.092 4.092 12 C -0.144 4.144 13 C 0.016 3.984 14 H 0.048 0.952 15 C -0.548 4.548 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.079 4.079 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.988 12.933 9.305 18.804 hybrid contribution -0.960 0.728 -1.054 1.601 sum 9.028 13.661 8.251 18.336 Atomic orbital electron populations 1.20850 0.90136 1.03676 1.02708 1.20796 0.97723 0.93578 1.01365 1.21469 0.94184 0.98005 0.96759 1.22083 0.95266 0.99542 1.03131 1.22731 1.00226 0.87739 0.95803 1.67552 1.07873 1.31363 1.11807 1.21264 0.89562 0.94999 0.94127 1.20564 0.99242 0.92133 0.98723 1.22119 0.98724 0.91256 0.94474 1.63580 1.14914 1.22460 1.24621 1.23171 0.88432 0.98472 0.99083 1.22683 0.98489 0.96719 0.96539 1.19852 0.88365 0.97348 0.92870 0.95228 1.21084 0.93253 1.04761 1.35696 0.92428 1.24980 0.96153 0.96945 0.95866 1.69958 0.99078 1.37081 1.46837 0.86605 0.77685 0.84017 0.79762 1.20657 1.21337 1.19896 1.22991 1.00451 0.98235 0.86219 0.90796 0.91368 0.90367 0.85065 0.85073 0.82964 0.90122 0.89258 0.91230 0.95262 0.92047 0.95034 0.92449 0.91342 0.93089 0.94977 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.21 36.01 0.33 -0.86 16 2 C -0.13 -1.56 5.90 -104.48 -0.62 -2.18 16 3 C -0.08 -0.78 9.86 -39.28 -0.39 -1.17 16 4 C -0.18 -1.70 10.11 -39.44 -0.40 -2.10 16 5 C 0.09 1.02 11.18 -17.54 -0.20 0.82 16 6 N -0.48 -6.71 10.27 -9.47 -0.10 -6.80 16 7 C 0.14 1.90 6.03 -82.59 -0.50 1.40 16 8 C -0.07 -0.97 4.86 -27.89 -0.14 -1.11 16 9 C 0.06 1.04 4.41 -3.82 -0.02 1.03 16 10 N -0.53 -10.20 5.16 -231.25 -1.19 -11.40 16 11 C 0.04 0.68 5.79 -2.29 -0.01 0.67 16 12 C -0.11 -2.45 5.96 -24.45 -0.15 -2.60 16 13 C 0.03 0.88 2.79 -89.81 -0.25 0.63 16 14 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 15 C -0.51 -14.04 8.47 -34.44 -0.29 -14.33 16 16 H 0.06 1.57 7.53 -52.48 -0.40 1.18 16 17 C 0.06 1.73 5.36 -17.82 -0.10 1.63 16 18 N -0.89 -25.55 12.51 55.43 0.69 -24.85 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.05 1.04 6.44 -2.84 -0.02 1.02 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.08 0.90 5.83 -51.93 -0.30 0.60 16 27 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.08 1.07 6.04 -51.93 -0.31 0.75 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 33 H 0.03 0.49 7.11 -51.93 -0.37 0.12 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.57 7.58 -51.93 -0.39 0.17 16 36 H 0.06 1.39 8.04 -51.93 -0.42 0.98 16 37 H 0.07 1.69 7.78 -51.93 -0.40 1.28 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.03 0.66 7.55 -51.93 -0.39 0.27 16 40 H 0.07 1.56 7.63 -51.93 -0.40 1.17 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -29.78 321.45 -9.82 -39.61 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.32 Total: -0.59 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.73 Total: -17.14 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.60 Total: -43.05 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.78 -9.82 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404895629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.084 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds