Wall clock time and date at job start Mon Mar 30 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38664 * 120.42408 * 2 1 4 4 C 1.38619 * 118.42386 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.16418 * 359.97438 * 4 3 2 6 6 N 1.31857 * 120.75974 * 359.73259 * 5 4 3 7 7 C 1.31886 * 121.72359 * 0.55368 * 6 5 4 8 8 C 1.50700 * 119.61507 * 179.70965 * 7 6 5 9 9 C 1.52996 * 109.47588 * 269.73351 * 8 7 6 10 10 N 1.46904 * 109.47327 * 179.97438 * 9 8 7 11 11 C 1.47843 * 110.99640 * 69.15576 * 10 9 8 12 12 C 1.54916 * 104.79337 * 146.36598 * 11 10 9 13 13 C 1.55398 * 101.74107 * 323.02060 * 12 11 10 14 14 H 1.09005 * 110.67856 * 277.17709 * 13 12 11 15 15 C 1.50693 * 110.84773 * 153.86113 * 13 12 11 16 16 H 1.08003 * 120.00166 * 246.46481 * 15 13 12 17 17 C 1.37883 * 119.99850 * 66.46355 * 15 13 12 18 18 N 1.31508 * 119.99898 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99869 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47362 * 90.00177 * 19 17 15 21 21 H 1.48504 * 109.46872 * 209.99961 * 19 17 15 22 22 H 1.48499 * 109.47348 * 329.99947 * 19 17 15 23 23 C 1.47439 * 111.00045 * 190.00285 * 10 9 8 24 24 H 1.09000 * 109.47568 * 270.02599 * 1 2 3 25 25 H 1.09002 * 109.46726 * 30.03011 * 1 2 3 26 26 H 1.09001 * 109.47171 * 150.01995 * 1 2 3 27 27 H 1.08010 * 120.78614 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.42225 * 180.02562 * 4 3 2 29 29 H 1.07996 * 119.61860 * 180.02562 * 5 4 3 30 30 H 1.08998 * 109.47022 * 149.73294 * 8 7 6 31 31 H 1.09000 * 109.47058 * 29.74094 * 8 7 6 32 32 H 1.09006 * 109.47033 * 60.00261 * 9 8 7 33 33 H 1.08995 * 109.47422 * 299.99996 * 9 8 7 34 34 H 1.08996 * 110.37823 * 265.19398 * 11 10 9 35 35 H 1.09002 * 110.37399 * 27.53914 * 11 10 9 36 36 H 1.08995 * 110.98807 * 81.01940 * 12 11 10 37 37 H 1.08997 * 110.99078 * 204.83973 * 12 11 10 38 38 H 0.97004 * 120.00131 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88998 * 356.14887 * 23 10 9 40 40 H 1.09003 * 109.88733 * 117.17548 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1473 0.0005 5 6 4.2256 -0.0825 0.0016 6 7 3.5254 -1.1998 0.0074 7 6 2.2066 -1.1917 0.0015 8 6 1.4538 -2.4972 0.0019 9 6 1.1996 -2.9399 -1.4404 10 7 0.4664 -4.2129 -1.4399 11 6 -0.9159 -4.0279 -0.9492 12 6 -1.7605 -5.0488 -1.7518 13 6 -1.0783 -4.9962 -3.1470 14 1 -1.4563 -4.1556 -3.7289 15 6 -1.2762 -6.2923 -3.8899 16 1 -0.4291 -6.9277 -4.1025 17 6 -2.5387 -6.6669 -4.2984 18 7 -3.5700 -5.8930 -4.0400 19 14 -2.7841 -8.2739 -5.2187 20 1 -3.0447 -9.3661 -4.2469 21 1 -3.9414 -8.1447 -6.1402 22 1 -1.5614 -8.5883 -6.0006 23 6 0.4102 -4.7908 -2.7952 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6890 2.1423 -0.0004 28 1 4.1736 2.0590 0.0010 29 1 5.3046 -0.1287 0.0025 30 1 0.5012 -2.3672 0.5153 31 1 2.0431 -3.2562 0.5165 32 1 2.1524 -3.0701 -1.9538 33 1 0.6103 -2.1810 -1.9549 34 1 -0.9721 -4.2443 0.1176 35 1 -1.2570 -3.0122 -1.1498 36 1 -1.6827 -6.0460 -1.3188 37 1 -2.8015 -4.7316 -1.8133 38 1 -4.4583 -6.1567 -4.3270 39 1 0.8691 -4.1069 -3.5092 40 1 0.9308 -5.7484 -2.8118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404895629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:30 Heat of formation + Delta-G solvation = 5.696462 kcal Electronic energy + Delta-G solvation = -19103.807963 eV Core-core repulsion = 16302.837493 eV Total energy + Delta-G solvation = -2800.970470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34236 -39.73537 -35.83959 -34.65179 -34.14830 -32.22540 -30.03498 -29.57968 -28.02312 -26.31379 -24.62467 -23.26258 -22.33978 -21.46872 -21.27188 -18.58489 -17.71478 -17.39421 -16.83488 -16.43268 -16.04950 -15.49438 -15.42721 -15.22042 -14.42285 -14.18633 -13.93759 -13.79460 -13.72889 -13.53474 -13.48635 -13.17164 -12.99204 -12.65472 -12.57395 -12.37608 -12.24975 -12.04557 -11.79606 -11.49785 -11.19391 -10.92121 -10.62329 -10.48641 -10.31913 -9.68167 -9.16443 -8.14417 -6.23603 0.17164 0.38314 1.41873 1.42500 1.52871 2.43142 2.79173 3.09250 3.17030 3.52811 3.80986 3.95986 4.00083 4.12291 4.14892 4.16364 4.27747 4.44221 4.51295 4.53045 4.58943 4.62065 4.75553 4.77127 4.84084 4.92442 4.96571 4.99449 5.11149 5.22202 5.26257 5.30378 5.37169 5.40617 5.57791 5.72204 5.84936 5.87255 6.15232 6.27610 6.35826 6.84434 7.10971 7.43583 8.95258 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.044411 B = 0.003760 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.317470 B = 7444.779624 C = 7719.864759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.141 4.141 3 C -0.081 4.081 4 C -0.170 4.170 5 C 0.077 3.923 6 N -0.511 5.511 7 C 0.111 3.889 8 C -0.056 4.056 9 C 0.070 3.930 10 N -0.533 5.533 11 C 0.049 3.951 12 C -0.099 4.099 13 C 0.027 3.973 14 H 0.000 1.000 15 C -0.531 4.531 16 H 0.054 0.946 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.956 3.044 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.268 1.268 23 C 0.059 3.941 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.161 0.839 28 H 0.166 0.834 29 H 0.175 0.825 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.261 0.739 39 H 0.037 0.963 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.240 15.531 9.682 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.143 4.143 3 C -0.107 4.107 4 C -0.189 4.189 5 C -0.080 4.080 6 N -0.220 5.220 7 C -0.027 4.027 8 C -0.094 4.094 9 C -0.058 4.058 10 N -0.257 5.257 11 C -0.078 4.078 12 C -0.138 4.138 13 C 0.007 3.993 14 H 0.018 0.982 15 C -0.569 4.569 16 H 0.072 0.928 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.781 3.219 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.193 1.193 23 C -0.069 4.069 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.178 0.822 28 H 0.184 0.816 29 H 0.192 0.808 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.778 14.406 9.992 20.580 hybrid contribution -1.145 0.367 -1.266 1.746 sum 9.633 14.774 8.726 19.677 Atomic orbital electron populations 1.20860 0.89290 1.03564 1.03475 1.20997 0.98489 0.93670 1.01157 1.21878 0.94656 0.98503 0.95680 1.22482 0.95422 1.00206 1.00784 1.23222 1.01370 0.87791 0.95660 1.67473 1.08336 1.33255 1.12950 1.21156 0.89822 0.95149 0.96532 1.20374 0.99728 0.92627 0.96680 1.22085 0.97695 0.89732 0.96327 1.63590 1.15121 1.24251 1.22779 1.23078 0.87349 0.97738 0.99635 1.22471 0.97958 0.97087 0.96249 1.19819 0.90805 0.95339 0.93288 0.98177 1.21423 0.93441 1.05738 1.36305 0.92781 1.25753 0.95863 1.00214 0.96692 1.70072 0.99402 1.38664 1.47647 0.85589 0.77721 0.79986 0.78572 1.20059 1.20854 1.19293 1.22754 0.97955 0.98311 0.87851 0.89560 0.89819 0.92081 0.82155 0.81614 0.80771 0.89204 0.90428 0.92018 0.95322 0.89632 0.93754 0.94030 0.93338 0.92993 0.94439 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.21 71.24 0.66 -1.46 16 2 C -0.14 -3.06 5.90 -19.77 -0.12 -3.18 16 3 C -0.08 -1.37 9.86 22.46 0.22 -1.15 16 4 C -0.17 -2.65 10.11 22.36 0.23 -2.42 16 5 C 0.08 1.54 11.18 84.69 0.95 2.49 16 6 N -0.51 -13.94 10.27 -183.88 -1.89 -15.83 16 7 C 0.11 2.94 6.03 42.54 0.26 3.20 16 8 C -0.06 -1.56 4.86 29.85 0.15 -1.41 16 9 C 0.07 2.30 4.41 86.30 0.38 2.68 16 10 N -0.53 -20.36 5.16 -885.52 -4.57 -24.93 16 11 C 0.05 1.85 5.79 86.78 0.50 2.35 16 12 C -0.10 -4.69 5.96 32.07 0.19 -4.50 16 13 C 0.03 1.38 2.79 -10.27 -0.03 1.35 16 14 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 15 C -0.53 -29.88 8.47 25.60 0.22 -29.67 16 16 H 0.05 3.00 7.53 -2.91 -0.02 2.98 16 17 C 0.01 0.77 5.36 84.66 0.45 1.23 16 18 N -0.92 -53.64 12.51 21.45 0.27 -53.37 16 19 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 23 C 0.06 2.59 6.44 86.65 0.56 3.15 16 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 26 H 0.06 1.33 5.83 -2.39 -0.01 1.32 16 27 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 28 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 29 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.09 2.28 6.04 -2.39 -0.01 2.26 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.10 8.03 -2.38 -0.02 2.08 16 33 H 0.03 0.94 7.11 -2.39 -0.02 0.93 16 34 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.04 1.56 7.58 -2.39 -0.02 1.54 16 36 H 0.04 2.06 8.04 -2.39 -0.02 2.04 16 37 H 0.05 2.45 7.78 -2.39 -0.02 2.43 16 38 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.04 1.58 7.55 -2.39 -0.02 1.56 16 40 H 0.06 2.78 7.63 -2.39 -0.02 2.76 16 Total: -1.00 -65.10 321.45 1.45 -63.66 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.00 Total: 11.67 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 4.61 Total: -27.34 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -6.19 Total: -94.13 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -65.10 1.45 -63.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404895629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.352 kcal (2) G-P(sol) polarization free energy of solvation -65.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds