Wall clock time and date at job start Mon Mar 30 2020 07:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 112.90643 * 2 1 4 4 C 1.53784 * 113.61415 * 228.75223 * 2 1 3 5 5 H 1.08998 * 113.69249 * 156.32157 * 4 2 1 6 6 N 1.46906 * 113.61354 * 25.43052 * 4 2 1 7 7 C 1.53774 * 87.07841 * 270.88082 * 4 2 1 8 8 C 1.53777 * 87.08520 * 334.56579 * 7 4 2 9 9 H 1.09005 * 113.61521 * 139.97846 * 8 7 4 10 10 N 1.46500 * 113.61727 * 270.88558 * 8 7 4 11 11 C 1.38851 * 119.99758 * 255.49697 * 10 8 7 12 12 C 1.39570 * 119.84368 * 359.72195 * 11 10 8 13 13 C 1.36348 * 120.15700 * 179.72381 * 12 11 10 14 14 C 1.40885 * 119.83845 * 0.54910 * 13 12 11 15 15 C 1.41134 * 120.15579 * 179.69960 * 14 13 12 16 16 H 1.07996 * 120.00024 * 204.62876 * 15 14 13 17 17 C 1.39870 * 119.99944 * 24.62894 * 15 14 13 18 18 N 1.30906 * 119.99857 * 17.95988 * 17 15 14 19 19 Si 1.86800 * 119.99948 * 197.96568 * 17 15 14 20 20 H 1.48500 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47057 * 119.99811 * 19 17 15 22 22 H 1.48496 * 109.46693 * 239.99826 * 19 17 15 23 23 C 1.40880 * 119.68814 * 359.72726 * 14 13 12 24 24 C 1.36347 * 119.83870 * 359.97438 * 23 14 13 25 25 H 1.09006 * 109.46877 * 288.74657 * 1 2 3 26 26 H 1.08997 * 109.46809 * 48.74673 * 1 2 3 27 27 H 1.08999 * 109.47118 * 168.74784 * 1 2 3 28 28 H 1.09000 * 109.47120 * 191.25051 * 3 2 1 29 29 H 1.08993 * 109.47609 * 311.25335 * 3 2 1 30 30 H 1.09000 * 109.47261 * 71.25600 * 3 2 1 31 31 H 1.00895 * 110.99565 * 182.99710 * 6 4 2 32 32 H 1.00903 * 110.99481 * 306.95205 * 6 4 2 33 33 H 1.09006 * 113.61307 * 220.01482 * 7 4 2 34 34 H 1.09002 * 113.69377 * 89.13041 * 7 4 2 35 35 H 0.97000 * 120.00171 * 75.48867 * 10 8 7 36 36 H 1.07997 * 119.92002 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.07640 * 180.27701 * 13 12 11 38 38 H 0.96996 * 120.00006 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.08622 * 180.02562 * 23 14 13 40 40 H 1.08001 * 119.91564 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9290 -1.0594 5 1 3.1590 -0.6508 -1.3501 6 7 1.2679 -1.1710 -2.2120 7 6 2.0930 -2.0424 -0.0001 8 6 2.1461 -0.9291 1.0593 9 1 1.4946 -1.1087 1.9145 10 7 3.5077 -0.5538 1.4485 11 6 4.0217 -0.9736 2.6682 12 6 3.2363 -1.7481 3.5233 13 6 3.7365 -2.1685 4.7199 14 6 5.0455 -1.8096 5.0975 15 6 5.5678 -2.2358 6.3375 16 1 6.3610 -1.6759 6.8104 17 6 5.0581 -3.3833 6.9537 18 7 4.3691 -4.2500 6.2554 19 14 5.3605 -3.6788 8.7733 20 1 6.1611 -2.5590 9.3303 21 1 4.0594 -3.7595 9.4846 22 1 6.1017 -4.9532 8.9512 23 6 5.8304 -1.0227 4.2318 24 6 5.3194 -0.6145 3.0355 25 1 -0.3633 0.3303 0.9732 26 1 -0.3633 0.6776 -0.7726 27 1 -0.3633 -1.0079 -0.2005 28 1 3.1954 1.3518 -0.2005 29 1 1.6429 2.0079 -0.7725 30 1 1.9628 1.8726 0.9731 31 1 1.6895 -1.8220 -2.8573 32 1 0.3601 -1.4945 -1.9132 33 1 2.9718 -2.6874 -0.0002 34 1 1.1575 -2.6019 0.0009 35 1 4.0502 -0.0121 0.8542 36 1 2.2313 -2.0184 3.2346 37 1 3.1292 -2.7716 5.3787 38 1 4.0153 -5.0456 6.6829 39 1 6.8349 -0.7442 4.5146 40 1 5.9199 -0.0109 2.3711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405241867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:30 Heat of formation + Delta-G solvation = 38.775373 kcal Electronic energy + Delta-G solvation = -19339.028431 eV Core-core repulsion = 16539.492370 eV Total energy + Delta-G solvation = -2799.536061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29060 -37.59375 -34.43031 -32.83951 -31.80376 -29.99441 -29.44803 -28.26143 -27.31609 -24.49292 -23.16747 -22.31341 -21.00942 -20.11251 -17.88208 -17.21285 -16.49982 -15.99541 -15.34901 -14.98913 -14.67408 -14.02545 -13.76676 -13.30604 -13.24431 -12.73778 -12.57125 -12.38625 -12.27173 -12.06721 -11.93746 -11.76889 -11.51777 -11.33910 -11.05107 -10.98392 -10.67735 -10.55769 -10.24869 -9.92260 -9.68251 -9.25464 -9.21474 -8.66091 -8.44796 -7.48740 -6.64415 -6.38150 -4.03035 2.90260 3.10610 3.15495 3.20961 3.34442 4.05672 4.17417 4.43363 4.52045 4.72844 4.83680 4.97234 5.07516 5.27021 5.52620 5.65414 5.74262 5.83766 5.86713 5.88563 5.96826 6.00390 6.09196 6.22070 6.28920 6.35910 6.38383 6.45050 6.94040 6.96659 7.07303 7.20652 7.35529 7.37429 7.57498 7.69763 7.84860 8.15879 8.30159 8.50618 8.70987 8.80902 9.06490 9.15675 10.37419 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038538 B = 0.004234 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.378804 B = 6611.978168 C = 6875.976965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.090 4.090 3 C -0.127 4.127 4 C 0.082 3.918 5 H 0.097 0.903 6 N -0.840 5.840 7 C -0.202 4.202 8 C 0.158 3.842 9 H 0.085 0.915 10 N -0.738 5.738 11 C 0.092 3.908 12 C -0.163 4.163 13 C -0.124 4.124 14 C 0.075 3.925 15 C -0.467 4.467 16 H 0.073 0.927 17 C 0.075 3.925 18 N -0.808 5.808 19 Si 0.902 3.098 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.277 1.277 23 C -0.187 4.187 24 C -0.158 4.158 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.337 0.663 32 H 0.340 0.660 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.384 0.616 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.091 0.909 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 4.567 -11.059 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.092 4.092 3 C -0.184 4.184 4 C -0.029 4.029 5 H 0.115 0.885 6 N -0.368 5.368 7 C -0.244 4.244 8 C 0.049 3.951 9 H 0.103 0.897 10 N -0.372 5.372 11 C -0.004 4.004 12 C -0.184 4.184 13 C -0.144 4.144 14 C 0.072 3.928 15 C -0.498 4.498 16 H 0.091 0.909 17 C -0.140 4.140 18 N -0.435 5.435 19 Si 0.727 3.273 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.203 1.203 23 C -0.208 4.208 24 C -0.180 4.180 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.218 0.782 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.948 5.042 -11.142 14.065 hybrid contribution 0.375 -1.219 0.902 1.563 sum -6.573 3.822 -10.239 12.754 Atomic orbital electron populations 1.21445 0.92964 1.01523 1.01845 1.22394 0.95906 0.95160 0.95736 1.21566 1.00104 0.95230 1.01550 1.22989 0.96384 0.95553 0.88016 0.88460 1.58723 1.06487 1.54244 1.17392 1.24366 1.02014 0.98379 0.99638 1.21423 0.85817 0.93034 0.94859 0.89665 1.43585 1.13105 1.61109 1.19381 1.17332 0.93794 1.02039 0.87251 1.20125 0.98118 1.03578 0.96601 1.20939 0.95803 1.01763 0.95938 1.17498 0.91117 0.91616 0.92580 1.19405 1.18198 1.08396 1.03808 0.90911 1.25793 0.93644 0.95088 0.99498 1.69867 1.28896 1.08192 1.36577 0.86375 0.78872 0.78809 0.83267 1.18614 1.19959 1.20285 1.20535 0.98542 1.06808 0.94881 1.19796 0.94234 1.05663 0.98342 0.92381 0.91913 0.92845 0.92855 0.92851 0.92355 0.85048 0.84660 0.91096 0.90447 0.78191 0.89362 0.86443 0.91405 0.89085 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 8.19 37.16 0.30 -0.95 16 2 C -0.09 -1.08 1.33 -153.69 -0.20 -1.28 16 3 C -0.13 -1.50 8.58 37.16 0.32 -1.18 16 4 C 0.08 0.95 4.37 -66.90 -0.29 0.66 16 5 H 0.10 1.19 7.97 -51.93 -0.41 0.78 16 6 N -0.84 -8.24 9.33 -3.98 -0.04 -8.28 16 7 C -0.20 -2.68 7.25 -25.92 -0.19 -2.86 16 8 C 0.16 2.34 3.49 -67.12 -0.23 2.10 16 9 H 0.09 1.39 6.19 -51.93 -0.32 1.07 16 10 N -0.74 -12.61 4.96 -51.25 -0.25 -12.87 16 11 C 0.09 2.00 6.67 -83.69 -0.56 1.44 16 12 C -0.16 -3.81 9.18 -39.77 -0.37 -4.17 16 13 C -0.12 -3.28 8.64 -39.26 -0.34 -3.62 16 14 C 0.07 2.03 5.57 -106.80 -0.60 1.44 16 15 C -0.47 -12.77 9.03 -37.87 -0.34 -13.11 16 16 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 17 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 18 N -0.81 -21.57 10.96 55.54 0.61 -20.96 16 19 Si 0.90 19.31 29.60 -169.99 -5.03 14.28 16 20 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 23 C -0.19 -4.67 9.74 -39.26 -0.38 -5.05 16 24 C -0.16 -3.56 9.82 -39.77 -0.39 -3.95 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.51 6.18 -51.93 -0.32 0.19 16 28 H 0.05 0.62 6.59 -51.93 -0.34 0.28 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.34 2.90 9.08 -39.29 -0.36 2.54 16 32 H 0.34 3.03 6.97 -39.29 -0.27 2.75 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.94 7.59 -51.93 -0.39 0.54 16 35 H 0.38 5.98 7.07 -40.82 -0.29 5.69 16 36 H 0.09 1.90 6.06 -52.49 -0.32 1.58 16 37 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 316.06 15.07 4.76 4.76 Total: -1.00 -27.87 316.06 -9.17 -37.04 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -5.86 Total: 14.71 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -3.36 Total: -28.68 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.32 Total: -42.11 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.87 -9.17 -37.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405241867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.814 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds