Wall clock time and date at job start Mon Mar 30 2020 07:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 112.90643 * 2 1 4 4 C 1.53784 * 113.61415 * 228.75223 * 2 1 3 5 5 H 1.08998 * 113.69249 * 156.32157 * 4 2 1 6 6 N 1.46906 * 113.61354 * 25.43052 * 4 2 1 7 7 C 1.53774 * 87.07841 * 270.88082 * 4 2 1 8 8 C 1.53777 * 87.08520 * 334.56579 * 7 4 2 9 9 H 1.09005 * 113.61521 * 139.97846 * 8 7 4 10 10 N 1.46500 * 113.61727 * 270.88558 * 8 7 4 11 11 C 1.38851 * 119.99758 * 255.49697 * 10 8 7 12 12 C 1.39570 * 119.84368 * 359.72195 * 11 10 8 13 13 C 1.36348 * 120.15700 * 179.72381 * 12 11 10 14 14 C 1.40885 * 119.83845 * 0.54910 * 13 12 11 15 15 C 1.41134 * 120.15579 * 179.69960 * 14 13 12 16 16 H 1.07996 * 120.00024 * 204.62876 * 15 14 13 17 17 C 1.39870 * 119.99944 * 24.62894 * 15 14 13 18 18 N 1.30906 * 119.99857 * 17.95988 * 17 15 14 19 19 Si 1.86800 * 119.99948 * 197.96568 * 17 15 14 20 20 H 1.48500 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47057 * 119.99811 * 19 17 15 22 22 H 1.48496 * 109.46693 * 239.99826 * 19 17 15 23 23 C 1.40880 * 119.68814 * 359.72726 * 14 13 12 24 24 C 1.36347 * 119.83870 * 359.97438 * 23 14 13 25 25 H 1.09006 * 109.46877 * 288.74657 * 1 2 3 26 26 H 1.08997 * 109.46809 * 48.74673 * 1 2 3 27 27 H 1.08999 * 109.47118 * 168.74784 * 1 2 3 28 28 H 1.09000 * 109.47120 * 191.25051 * 3 2 1 29 29 H 1.08993 * 109.47609 * 311.25335 * 3 2 1 30 30 H 1.09000 * 109.47261 * 71.25600 * 3 2 1 31 31 H 1.00895 * 110.99565 * 182.99710 * 6 4 2 32 32 H 1.00903 * 110.99481 * 306.95205 * 6 4 2 33 33 H 1.09006 * 113.61307 * 220.01482 * 7 4 2 34 34 H 1.09002 * 113.69377 * 89.13041 * 7 4 2 35 35 H 0.97000 * 120.00171 * 75.48867 * 10 8 7 36 36 H 1.07997 * 119.92002 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.07640 * 180.27701 * 13 12 11 38 38 H 0.96996 * 120.00006 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.08622 * 180.02562 * 23 14 13 40 40 H 1.08001 * 119.91564 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9290 -1.0594 5 1 3.1590 -0.6508 -1.3501 6 7 1.2679 -1.1710 -2.2120 7 6 2.0930 -2.0424 -0.0001 8 6 2.1461 -0.9291 1.0593 9 1 1.4946 -1.1087 1.9145 10 7 3.5077 -0.5538 1.4485 11 6 4.0217 -0.9736 2.6682 12 6 3.2363 -1.7481 3.5233 13 6 3.7365 -2.1685 4.7199 14 6 5.0455 -1.8096 5.0975 15 6 5.5678 -2.2358 6.3375 16 1 6.3610 -1.6759 6.8104 17 6 5.0581 -3.3833 6.9537 18 7 4.3691 -4.2500 6.2554 19 14 5.3605 -3.6788 8.7733 20 1 6.1611 -2.5590 9.3303 21 1 4.0594 -3.7595 9.4846 22 1 6.1017 -4.9532 8.9512 23 6 5.8304 -1.0227 4.2318 24 6 5.3194 -0.6145 3.0355 25 1 -0.3633 0.3303 0.9732 26 1 -0.3633 0.6776 -0.7726 27 1 -0.3633 -1.0079 -0.2005 28 1 3.1954 1.3518 -0.2005 29 1 1.6429 2.0079 -0.7725 30 1 1.9628 1.8726 0.9731 31 1 1.6895 -1.8220 -2.8573 32 1 0.3601 -1.4945 -1.9132 33 1 2.9718 -2.6874 -0.0002 34 1 1.1575 -2.6019 0.0009 35 1 4.0502 -0.0121 0.8542 36 1 2.2313 -2.0184 3.2346 37 1 3.1292 -2.7716 5.3787 38 1 4.0153 -5.0456 6.6829 39 1 6.8349 -0.7442 4.5146 40 1 5.9199 -0.0109 2.3711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405241867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:29 Heat of formation + Delta-G solvation = 22.095652 kcal Electronic energy + Delta-G solvation = -19339.751718 eV Core-core repulsion = 16539.492370 eV Total energy + Delta-G solvation = -2800.259348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40745 -39.38618 -36.13090 -34.42611 -32.86992 -31.41618 -31.15085 -29.87511 -28.29861 -26.26468 -24.48175 -23.38370 -22.81834 -21.81783 -19.16643 -19.01537 -18.02179 -16.92241 -16.84094 -16.58021 -15.86662 -15.68354 -15.06152 -14.64420 -14.44723 -14.38428 -13.99709 -13.83939 -13.62423 -13.44048 -13.17274 -12.98505 -12.89504 -12.76233 -12.71321 -12.44338 -12.29965 -11.79340 -11.60244 -11.49853 -11.21298 -10.98563 -10.90672 -10.23415 -9.46073 -9.40763 -8.55832 -8.15300 -6.01123 1.09469 1.18007 1.39660 1.53960 1.57330 2.27049 2.80051 2.83791 3.47636 3.52955 3.79400 3.87877 3.97170 4.06023 4.32810 4.39996 4.49897 4.57259 4.68488 4.79699 4.86371 4.95405 4.98400 5.02649 5.08321 5.10260 5.15978 5.23178 5.28835 5.43358 5.44177 5.51348 5.71034 5.82142 5.96143 6.18572 6.25983 6.39311 6.65123 6.67754 6.88220 7.08095 7.14673 7.31546 8.47785 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038538 B = 0.004234 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.378804 B = 6611.978168 C = 6875.976965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.079 4.079 3 C -0.127 4.127 4 C 0.096 3.904 5 H 0.095 0.905 6 N -0.836 5.836 7 C -0.197 4.197 8 C 0.139 3.861 9 H 0.069 0.931 10 N -0.727 5.727 11 C 0.115 3.885 12 C -0.173 4.173 13 C -0.143 4.143 14 C 0.035 3.965 15 C -0.506 4.506 16 H 0.067 0.933 17 C 0.032 3.968 18 N -0.843 5.843 19 Si 0.976 3.024 20 H -0.260 1.260 21 H -0.266 1.266 22 H -0.268 1.268 23 C -0.196 4.196 24 C -0.166 4.166 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.346 0.654 32 H 0.347 0.653 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.396 0.604 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.096 0.904 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.534 5.281 -12.667 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.080 4.080 3 C -0.185 4.185 4 C -0.017 4.017 5 H 0.113 0.887 6 N -0.366 5.366 7 C -0.239 4.239 8 C 0.031 3.969 9 H 0.087 0.913 10 N -0.360 5.360 11 C 0.016 3.984 12 C -0.195 4.195 13 C -0.163 4.163 14 C 0.032 3.968 15 C -0.538 4.538 16 H 0.086 0.914 17 C -0.179 4.179 18 N -0.471 5.471 19 Si 0.798 3.202 20 H -0.184 1.184 21 H -0.191 1.191 22 H -0.193 1.193 23 C -0.216 4.216 24 C -0.188 4.188 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.231 0.769 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.721 5.772 -12.810 16.032 hybrid contribution 0.548 -1.368 1.194 1.897 sum -7.173 4.404 -11.616 14.345 Atomic orbital electron populations 1.21468 0.91568 1.02514 1.02155 1.22331 0.96859 0.94802 0.94028 1.21571 1.00316 0.95097 1.01472 1.22806 0.96585 0.94121 0.88165 0.88739 1.58690 1.06591 1.54749 1.16559 1.24346 1.01790 0.98104 0.99622 1.21671 0.84376 0.95491 0.95347 0.91268 1.43567 1.14207 1.60424 1.17813 1.17423 0.93195 0.99688 0.88085 1.20263 0.99111 1.04023 0.96136 1.20860 0.95765 1.02687 0.97014 1.17815 0.91970 0.93366 0.93611 1.19624 1.19454 1.09651 1.05026 0.91447 1.26606 0.93138 0.94268 1.03921 1.69928 1.29949 1.08770 1.38454 0.85259 0.78987 0.78780 0.77223 1.18411 1.19117 1.19344 1.20748 0.98776 1.06469 0.95589 1.20089 0.94889 1.05789 0.98023 0.92689 0.90741 0.91854 0.92793 0.91486 0.93356 0.83994 0.83819 0.93174 0.89105 0.76863 0.87890 0.88435 0.90797 0.88548 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 8.19 71.98 0.59 -1.56 16 2 C -0.08 -1.67 1.33 -51.65 -0.07 -1.74 16 3 C -0.13 -2.67 8.58 71.98 0.62 -2.05 16 4 C 0.10 1.94 4.37 45.44 0.20 2.14 16 5 H 0.09 2.03 7.97 -2.39 -0.02 2.01 16 6 N -0.84 -13.64 9.33 -166.49 -1.55 -15.19 16 7 C -0.20 -4.83 7.25 31.12 0.23 -4.60 16 8 C 0.14 3.89 3.49 45.52 0.16 4.05 16 9 H 0.07 2.18 6.19 -2.38 -0.01 2.17 16 10 N -0.73 -23.61 4.96 -316.05 -1.57 -25.18 16 11 C 0.12 4.90 6.67 38.67 0.26 5.16 16 12 C -0.17 -8.22 9.18 22.15 0.20 -8.01 16 13 C -0.14 -7.83 8.64 22.48 0.19 -7.63 16 14 C 0.04 1.98 5.57 -21.27 -0.12 1.87 16 15 C -0.51 -28.82 9.03 23.38 0.21 -28.60 16 16 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 17 C 0.03 1.72 5.13 85.23 0.44 2.16 16 18 N -0.84 -46.53 10.96 21.82 0.24 -46.29 16 19 Si 0.98 40.49 29.60 68.60 2.03 42.52 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 23 C -0.20 -9.90 9.74 22.48 0.22 -9.68 16 24 C -0.17 -7.30 9.82 22.15 0.22 -7.09 16 25 H 0.05 1.03 8.14 -2.38 -0.02 1.02 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.01 6.18 -2.39 -0.01 0.99 16 28 H 0.05 1.11 6.59 -2.39 -0.02 1.10 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.35 4.84 9.08 -89.70 -0.81 4.03 16 32 H 0.35 4.96 6.97 -89.69 -0.63 4.33 16 33 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.09 1.99 7.59 -2.39 -0.02 1.97 16 35 H 0.40 11.33 7.07 -92.71 -0.66 10.68 16 36 H 0.10 4.47 6.06 -2.91 -0.02 4.45 16 37 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 38 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 39 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -61.64 316.06 1.46 -60.18 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -1.03 Total: 39.54 kcal Atomic # 6 Polarization: -58.93 SS G_CDS: 3.34 Total: -55.58 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -2.88 Total: -86.66 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -61.64 1.46 -60.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405241867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.278 kcal (2) G-P(sol) polarization free energy of solvation -61.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds