Wall clock time and date at job start Mon Mar 30 2020 07:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 112.90740 * 2 1 4 4 C 1.53774 * 113.61394 * 228.74271 * 2 1 3 5 5 H 1.09002 * 113.61356 * 105.39029 * 4 2 1 6 6 N 1.46503 * 113.61829 * 334.57250 * 4 2 1 7 7 C 1.38859 * 119.99989 * 154.99424 * 6 4 2 8 8 C 1.39565 * 119.84096 * 359.73332 * 7 6 4 9 9 C 1.36345 * 120.15648 * 179.71678 * 8 7 6 10 10 C 1.40886 * 119.83457 * 0.54943 * 9 8 7 11 11 C 1.41144 * 120.15374 * 179.70003 * 10 9 8 12 12 H 1.07999 * 119.99732 * 204.62973 * 11 10 9 13 13 C 1.39858 * 119.99920 * 24.63042 * 11 10 9 14 14 N 1.30910 * 119.99989 * 17.95203 * 13 11 10 15 15 Si 1.86803 * 120.00133 * 197.95607 * 13 11 10 16 16 H 1.48498 * 109.47165 * 59.99484 * 15 13 11 17 17 H 1.48497 * 109.47446 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46757 * 300.00121 * 15 13 11 19 19 C 1.40885 * 119.69036 * 359.72396 * 10 9 8 20 20 C 1.36339 * 119.83683 * 359.97438 * 19 10 9 21 21 C 1.53779 * 87.08481 * 220.01962 * 4 2 1 22 22 C 1.53785 * 87.07894 * 25.43674 * 21 4 2 23 23 H 1.08995 * 113.68898 * 220.00679 * 22 21 4 24 24 N 1.46897 * 113.61438 * 89.11030 * 22 21 4 25 25 H 1.09002 * 109.47618 * 308.25538 * 1 2 3 26 26 H 1.09002 * 109.47389 * 68.25426 * 1 2 3 27 27 H 1.09004 * 109.47585 * 188.25762 * 1 2 3 28 28 H 1.09003 * 109.46685 * 171.74058 * 3 2 1 29 29 H 1.08992 * 109.47148 * 291.74385 * 3 2 1 30 30 H 1.09000 * 109.46901 * 51.74549 * 3 2 1 31 31 H 0.96994 * 119.99701 * 334.99922 * 6 4 2 32 32 H 1.07996 * 119.92529 * 359.97435 * 8 7 6 33 33 H 1.07994 * 120.08115 * 180.27116 * 9 8 7 34 34 H 0.97007 * 119.99465 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.08075 * 179.97438 * 19 10 9 36 36 H 1.08004 * 119.91583 * 179.97438 * 20 19 10 37 37 H 1.08999 * 113.61676 * 270.89205 * 21 4 2 38 38 H 1.09004 * 113.61176 * 139.98108 * 21 4 2 39 39 H 1.00905 * 110.99416 * 82.50895 * 24 22 21 40 40 H 1.00899 * 111.00063 * 206.45701 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0592 5 1 2.5637 -0.3990 -1.9151 6 7 1.2703 -2.0373 -1.4485 7 6 1.4166 -2.6332 -2.6941 8 6 2.3953 -2.1702 -3.5748 9 6 2.5484 -2.7544 -4.7972 10 6 1.7081 -3.8203 -5.1749 11 6 1.8565 -4.4258 -6.4412 12 1 1.0207 -4.9355 -6.8973 13 6 3.0860 -4.3657 -7.1052 14 7 4.1754 -4.0746 -6.4404 15 14 3.1734 -4.7007 -8.9409 16 1 2.3265 -3.7184 -9.6642 17 1 4.5799 -4.5756 -9.4005 18 1 2.6832 -6.0749 -9.2171 19 6 0.7186 -4.2786 -4.2829 20 6 0.5809 -3.6889 -3.0613 21 6 3.1923 -1.3136 0.0001 22 6 2.1459 -0.9291 1.0595 23 1 2.5636 -0.3990 1.9153 24 7 1.2678 -2.0402 1.4497 25 1 -0.3634 0.6363 0.8070 26 1 -0.3634 0.3807 -0.9545 27 1 -0.3634 -1.0170 0.1476 28 1 3.2038 1.3481 0.1476 29 1 1.9163 1.8922 -0.9545 30 1 1.6808 1.9916 0.8070 31 1 0.5883 -2.3546 -0.8361 32 1 3.0356 -1.3500 -3.2858 33 1 3.3090 -2.3980 -5.4760 34 1 5.0282 -4.0333 -6.9010 35 1 0.0707 -5.0949 -4.5661 36 1 -0.1775 -4.0390 -2.3767 37 1 4.0710 -0.6687 0.0002 38 1 3.4442 -2.3742 0.0001 39 1 1.7097 -2.6233 2.1446 40 1 0.3768 -1.6989 1.7776 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405241869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:34 Heat of formation + Delta-G solvation = 44.951212 kcal Electronic energy + Delta-G solvation = -19485.184943 eV Core-core repulsion = 16685.916686 eV Total energy + Delta-G solvation = -2799.268257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20124 -37.46204 -34.17311 -32.51899 -32.00542 -30.16570 -29.32385 -28.40526 -26.88605 -24.48394 -23.13769 -22.17407 -20.94936 -19.93429 -17.53985 -17.11568 -16.43685 -15.95329 -15.39533 -14.90351 -14.71918 -14.22537 -13.79512 -13.48743 -12.76733 -12.70522 -12.48216 -12.31724 -12.16409 -11.95989 -11.89257 -11.70611 -11.45417 -11.01411 -10.97388 -10.94153 -10.63641 -10.38267 -10.06045 -9.96003 -9.60269 -9.15570 -9.09918 -8.63330 -8.33162 -7.38078 -6.54618 -6.22512 -3.92684 3.00615 3.18483 3.20947 3.22736 3.44921 4.12012 4.22285 4.37291 4.60195 4.82136 4.93613 5.12319 5.15541 5.33839 5.48113 5.63977 5.71734 5.86079 5.87692 5.93561 5.99186 6.01997 6.14840 6.36170 6.40556 6.43461 6.48314 6.55232 7.03888 7.09970 7.19127 7.30608 7.35762 7.46761 7.70545 7.81162 7.98998 8.24827 8.42673 8.66193 8.86252 9.03284 9.15536 9.27698 10.46475 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037246 B = 0.004435 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.586332 B = 6311.782700 C = 6558.427922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.125 4.125 4 C 0.168 3.832 5 H 0.081 0.919 6 N -0.727 5.727 7 C 0.101 3.899 8 C -0.169 4.169 9 C -0.122 4.122 10 C 0.071 3.929 11 C -0.469 4.469 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.810 5.810 15 Si 0.901 3.099 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.269 1.269 19 C -0.185 4.185 20 C -0.162 4.162 21 C -0.160 4.160 22 C 0.073 3.927 23 H 0.038 0.962 24 N -0.827 5.827 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.394 0.606 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.275 0.725 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.341 0.659 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 8.277 12.920 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.183 4.183 4 C 0.059 3.941 5 H 0.099 0.901 6 N -0.361 5.361 7 C 0.004 3.996 8 C -0.191 4.191 9 C -0.142 4.142 10 C 0.068 3.932 11 C -0.500 4.500 12 H 0.089 0.911 13 C -0.140 4.140 14 N -0.438 5.438 15 Si 0.727 3.273 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.193 1.193 19 C -0.206 4.206 20 C -0.184 4.184 21 C -0.200 4.200 22 C -0.039 4.039 23 H 0.056 0.944 24 N -0.359 5.359 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.154 0.846 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.216 8.165 12.079 14.747 hybrid contribution 0.070 0.051 0.456 0.464 sum -2.146 8.216 12.535 15.141 Atomic orbital electron populations 1.21575 0.94218 1.01973 1.01329 1.22361 0.95871 0.94497 0.97282 1.21532 1.00522 0.94277 1.01966 1.21332 0.90431 0.88119 0.94256 0.90125 1.43606 1.39580 1.37175 1.15727 1.17405 0.98751 0.96989 0.86466 1.20135 1.00385 1.02474 0.96098 1.20925 1.01384 0.96351 0.95564 1.17468 0.91614 0.91451 0.92654 1.19315 0.96584 1.32151 1.01964 0.91124 1.25764 0.95234 0.93331 0.99632 1.69863 0.98979 1.38083 1.36871 0.86494 0.77635 0.79676 0.83530 1.19159 1.20660 1.19346 1.20530 1.03804 1.01947 0.94274 1.19780 1.01437 0.99410 0.97789 1.23634 0.96706 1.02365 0.97316 1.22448 0.94796 0.91563 0.95063 0.94406 1.58464 1.06728 1.21931 1.48756 0.93687 0.92279 0.91370 0.92325 0.91904 0.92705 0.76958 0.89404 0.86546 0.91417 0.89236 0.89726 0.90286 0.90589 0.84561 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.06 37.16 0.30 -1.24 16 2 C -0.10 -1.18 1.33 -153.70 -0.21 -1.38 16 3 C -0.13 -1.28 9.07 37.16 0.34 -0.94 16 4 C 0.17 2.60 3.57 -67.12 -0.24 2.36 16 5 H 0.08 1.36 6.05 -51.93 -0.31 1.05 16 6 N -0.73 -13.13 4.79 -51.25 -0.25 -13.37 16 7 C 0.10 2.28 6.67 -83.69 -0.56 1.72 16 8 C -0.17 -4.07 9.19 -39.77 -0.37 -4.44 16 9 C -0.12 -3.29 8.64 -39.26 -0.34 -3.63 16 10 C 0.07 1.97 5.57 -106.79 -0.60 1.38 16 11 C -0.47 -13.09 9.03 -37.87 -0.34 -13.43 16 12 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 13 C 0.07 1.99 5.13 -17.34 -0.09 1.90 16 14 N -0.81 -22.08 10.96 55.54 0.61 -21.47 16 15 Si 0.90 19.70 29.60 -169.99 -5.03 14.67 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 19 C -0.19 -4.75 9.74 -39.26 -0.38 -5.13 16 20 C -0.16 -3.78 9.82 -39.77 -0.39 -4.17 16 21 C -0.16 -2.23 7.33 -25.92 -0.19 -2.42 16 22 C 0.07 0.84 4.52 -66.90 -0.30 0.53 16 23 H 0.04 0.40 8.10 -51.93 -0.42 -0.02 16 24 N -0.83 -8.83 7.43 -3.97 -0.03 -8.86 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.81 5.04 -51.93 -0.26 0.55 16 28 H 0.06 0.57 7.32 -51.93 -0.38 0.19 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.39 6.72 5.93 -40.82 -0.24 6.47 16 32 H 0.09 1.94 6.01 -52.49 -0.32 1.63 16 33 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 34 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 35 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.08 0.98 7.63 -51.93 -0.40 0.59 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.34 3.20 9.08 -39.29 -0.36 2.84 16 40 H 0.34 3.10 7.44 -39.29 -0.29 2.80 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -28.80 313.55 -9.15 -37.95 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -5.81 Total: 15.25 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -3.36 Total: -28.89 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.33 Total: -43.70 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.80 -9.15 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405241869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.897 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds