Wall clock time and date at job start Mon Mar 30 2020 07:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 112.90740 * 2 1 4 4 C 1.53774 * 113.61394 * 228.74271 * 2 1 3 5 5 H 1.09002 * 113.61356 * 105.39029 * 4 2 1 6 6 N 1.46503 * 113.61829 * 334.57250 * 4 2 1 7 7 C 1.38859 * 119.99989 * 154.99424 * 6 4 2 8 8 C 1.39565 * 119.84096 * 359.73332 * 7 6 4 9 9 C 1.36345 * 120.15648 * 179.71678 * 8 7 6 10 10 C 1.40886 * 119.83457 * 0.54943 * 9 8 7 11 11 C 1.41144 * 120.15374 * 179.70003 * 10 9 8 12 12 H 1.07999 * 119.99732 * 204.62973 * 11 10 9 13 13 C 1.39858 * 119.99920 * 24.63042 * 11 10 9 14 14 N 1.30910 * 119.99989 * 17.95203 * 13 11 10 15 15 Si 1.86803 * 120.00133 * 197.95607 * 13 11 10 16 16 H 1.48498 * 109.47165 * 59.99484 * 15 13 11 17 17 H 1.48497 * 109.47446 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46757 * 300.00121 * 15 13 11 19 19 C 1.40885 * 119.69036 * 359.72396 * 10 9 8 20 20 C 1.36339 * 119.83683 * 359.97438 * 19 10 9 21 21 C 1.53779 * 87.08481 * 220.01962 * 4 2 1 22 22 C 1.53785 * 87.07894 * 25.43674 * 21 4 2 23 23 H 1.08995 * 113.68898 * 220.00679 * 22 21 4 24 24 N 1.46897 * 113.61438 * 89.11030 * 22 21 4 25 25 H 1.09002 * 109.47618 * 308.25538 * 1 2 3 26 26 H 1.09002 * 109.47389 * 68.25426 * 1 2 3 27 27 H 1.09004 * 109.47585 * 188.25762 * 1 2 3 28 28 H 1.09003 * 109.46685 * 171.74058 * 3 2 1 29 29 H 1.08992 * 109.47148 * 291.74385 * 3 2 1 30 30 H 1.09000 * 109.46901 * 51.74549 * 3 2 1 31 31 H 0.96994 * 119.99701 * 334.99922 * 6 4 2 32 32 H 1.07996 * 119.92529 * 359.97435 * 8 7 6 33 33 H 1.07994 * 120.08115 * 180.27116 * 9 8 7 34 34 H 0.97007 * 119.99465 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.08075 * 179.97438 * 19 10 9 36 36 H 1.08004 * 119.91583 * 179.97438 * 20 19 10 37 37 H 1.08999 * 113.61676 * 270.89205 * 21 4 2 38 38 H 1.09004 * 113.61176 * 139.98108 * 21 4 2 39 39 H 1.00905 * 110.99416 * 82.50895 * 24 22 21 40 40 H 1.00899 * 111.00063 * 206.45701 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0592 5 1 2.5637 -0.3990 -1.9151 6 7 1.2703 -2.0373 -1.4485 7 6 1.4166 -2.6332 -2.6941 8 6 2.3953 -2.1702 -3.5748 9 6 2.5484 -2.7544 -4.7972 10 6 1.7081 -3.8203 -5.1749 11 6 1.8565 -4.4258 -6.4412 12 1 1.0207 -4.9355 -6.8973 13 6 3.0860 -4.3657 -7.1052 14 7 4.1754 -4.0746 -6.4404 15 14 3.1734 -4.7007 -8.9409 16 1 2.3265 -3.7184 -9.6642 17 1 4.5799 -4.5756 -9.4005 18 1 2.6832 -6.0749 -9.2171 19 6 0.7186 -4.2786 -4.2829 20 6 0.5809 -3.6889 -3.0613 21 6 3.1923 -1.3136 0.0001 22 6 2.1459 -0.9291 1.0595 23 1 2.5636 -0.3990 1.9153 24 7 1.2678 -2.0402 1.4497 25 1 -0.3634 0.6363 0.8070 26 1 -0.3634 0.3807 -0.9545 27 1 -0.3634 -1.0170 0.1476 28 1 3.2038 1.3481 0.1476 29 1 1.9163 1.8922 -0.9545 30 1 1.6808 1.9916 0.8070 31 1 0.5883 -2.3546 -0.8361 32 1 3.0356 -1.3500 -3.2858 33 1 3.3090 -2.3980 -5.4760 34 1 5.0282 -4.0333 -6.9010 35 1 0.0707 -5.0949 -4.5661 36 1 -0.1775 -4.0390 -2.3767 37 1 4.0710 -0.6687 0.0002 38 1 3.4442 -2.3742 0.0001 39 1 1.7097 -2.6233 2.1446 40 1 0.3768 -1.6989 1.7776 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405241869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:34 Heat of formation + Delta-G solvation = 27.688637 kcal Electronic energy + Delta-G solvation = -19485.933504 eV Core-core repulsion = 16685.916686 eV Total energy + Delta-G solvation = -2800.016818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33036 -39.31682 -35.98399 -34.15432 -33.01889 -31.42487 -31.14733 -30.13924 -27.92241 -26.22060 -24.55404 -23.21927 -22.82690 -21.71734 -19.12203 -18.73904 -17.91762 -16.90322 -16.78731 -16.51783 -16.03820 -15.67396 -15.21917 -14.88709 -14.44101 -14.21083 -13.85474 -13.66571 -13.50291 -13.39985 -13.19228 -13.00238 -12.79658 -12.71761 -12.64023 -12.33946 -12.20029 -11.79486 -11.54072 -11.27655 -11.12129 -10.98059 -10.88247 -10.14818 -9.45887 -9.36536 -8.51311 -8.04459 -5.95516 1.14766 1.22648 1.40502 1.51715 1.62416 2.29164 2.86883 2.95217 3.37802 3.62809 3.81845 3.89713 4.09642 4.17265 4.34791 4.46340 4.54688 4.61360 4.78055 4.83052 4.84717 4.93637 5.01828 5.06498 5.09851 5.16625 5.23915 5.25424 5.33498 5.47193 5.52496 5.54697 5.76021 5.87724 6.02939 6.22152 6.36021 6.45226 6.64277 6.74436 6.97738 7.11861 7.25085 7.51766 8.51723 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037246 B = 0.004435 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.586332 B = 6311.782700 C = 6558.427922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 C -0.125 4.125 4 C 0.143 3.857 5 H 0.063 0.937 6 N -0.715 5.715 7 C 0.122 3.878 8 C -0.180 4.180 9 C -0.140 4.140 10 C 0.031 3.969 11 C -0.508 4.508 12 H 0.067 0.933 13 C 0.032 3.968 14 N -0.845 5.845 15 Si 0.976 3.024 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.262 1.262 19 C -0.193 4.193 20 C -0.171 4.171 21 C -0.160 4.160 22 C 0.087 3.913 23 H 0.060 0.940 24 N -0.839 5.839 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.402 0.598 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.281 0.719 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.350 0.650 40 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 9.310 14.695 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.086 4.086 3 C -0.183 4.183 4 C 0.035 3.965 5 H 0.081 0.919 6 N -0.348 5.348 7 C 0.021 3.979 8 C -0.202 4.202 9 C -0.160 4.160 10 C 0.028 3.972 11 C -0.540 4.540 12 H 0.085 0.915 13 C -0.180 4.180 14 N -0.473 5.473 15 Si 0.798 3.202 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.186 1.186 19 C -0.213 4.213 20 C -0.193 4.193 21 C -0.200 4.200 22 C -0.025 4.025 23 H 0.077 0.923 24 N -0.373 5.373 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.240 0.760 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.164 0.836 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.734 9.219 13.917 16.915 hybrid contribution 0.188 -0.208 0.099 0.297 sum -2.546 9.011 14.015 16.855 Atomic orbital electron populations 1.21569 0.93712 1.02220 1.01498 1.22298 0.96244 0.94911 0.95186 1.21560 1.01020 0.93103 1.02570 1.21658 0.91590 0.88305 0.94927 0.91918 1.43616 1.39906 1.37251 1.14061 1.17523 0.96941 0.95843 0.87554 1.20271 1.01326 1.02997 0.95612 1.20855 1.01524 0.97093 0.96558 1.17791 0.93152 0.92562 0.93681 1.19555 0.97385 1.33910 1.03106 0.91504 1.26601 0.94325 0.92729 1.04317 1.69934 0.99565 1.39023 1.38793 0.85354 0.78076 0.79646 0.77143 1.18768 1.19456 1.18647 1.20736 1.03395 1.02250 0.94956 1.20049 1.02246 0.99487 0.97531 1.23621 0.97530 1.01075 0.97774 1.22319 0.93689 0.91431 0.95046 0.92251 1.58399 1.07353 1.21992 1.49528 0.91168 0.93793 0.91775 0.91721 0.92452 0.90559 0.75993 0.87934 0.88461 0.90867 0.88666 0.86908 0.88753 0.93144 0.83606 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 8.06 71.98 0.58 -2.09 16 2 C -0.08 -1.79 1.33 -51.66 -0.07 -1.86 16 3 C -0.12 -2.15 9.07 71.98 0.65 -1.50 16 4 C 0.14 4.24 3.57 45.51 0.16 4.40 16 5 H 0.06 2.09 6.05 -2.39 -0.01 2.07 16 6 N -0.71 -24.88 4.79 -316.06 -1.51 -26.39 16 7 C 0.12 5.44 6.67 38.67 0.26 5.69 16 8 C -0.18 -8.84 9.19 22.15 0.20 -8.64 16 9 C -0.14 -7.87 8.64 22.48 0.19 -7.68 16 10 C 0.03 1.79 5.57 -21.27 -0.12 1.67 16 11 C -0.51 -29.52 9.03 23.38 0.21 -29.31 16 12 H 0.07 3.76 7.91 -2.91 -0.02 3.73 16 13 C 0.03 1.72 5.13 85.22 0.44 2.16 16 14 N -0.84 -47.62 10.96 21.81 0.24 -47.38 16 15 Si 0.98 41.25 29.60 68.60 2.03 43.28 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 C -0.19 -10.10 9.74 22.47 0.22 -9.88 16 20 C -0.17 -7.90 9.82 22.15 0.22 -7.68 16 21 C -0.16 -4.17 7.33 31.12 0.23 -3.94 16 22 C 0.09 1.71 4.52 45.45 0.21 1.92 16 23 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 24 N -0.84 -15.41 7.43 -166.49 -1.24 -16.65 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.34 5.04 -2.38 -0.01 1.33 16 28 H 0.06 1.04 7.32 -2.39 -0.02 1.03 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.40 12.86 5.93 -92.71 -0.55 12.31 16 32 H 0.10 4.62 6.01 -2.91 -0.02 4.61 16 33 H 0.10 5.74 6.16 -2.91 -0.02 5.72 16 34 H 0.28 14.45 8.30 -92.70 -0.77 13.68 16 35 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 36 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.09 2.15 7.63 -2.39 -0.02 2.13 16 38 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.35 5.56 9.08 -89.69 -0.81 4.75 16 40 H 0.35 5.19 7.44 -89.69 -0.67 4.52 16 Total: -1.00 -64.32 313.55 1.94 -62.38 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.96 Total: 41.50 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 3.38 Total: -56.74 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -2.51 Total: -90.42 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -64.32 1.94 -62.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405241869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.070 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds