Wall clock time and date at job start Mon Mar 30 2020 07:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.84770 * 2 1 4 4 C 1.53779 * 113.61636 * 228.69511 * 2 1 3 5 5 H 1.09004 * 113.61089 * 334.64893 * 4 2 1 6 6 N 1.46899 * 113.61672 * 105.46458 * 4 2 1 7 7 C 1.53954 * 87.11348 * 220.09047 * 4 2 1 8 8 C 1.53783 * 87.02063 * 25.35890 * 7 4 2 9 9 H 1.08998 * 113.61690 * 220.05298 * 8 7 4 10 10 N 1.46507 * 113.61119 * 89.23093 * 8 7 4 11 11 C 1.38851 * 119.99657 * 105.86744 * 10 8 7 12 12 C 1.39569 * 119.84588 * 359.72273 * 11 10 8 13 13 C 1.36338 * 120.16117 * 179.76514 * 12 11 10 14 14 C 1.40885 * 119.83950 * 0.53189 * 13 12 11 15 15 C 1.41135 * 120.16139 * 179.74724 * 14 13 12 16 16 H 1.08000 * 120.00380 * 150.11263 * 15 14 13 17 17 C 1.39870 * 119.99540 * 330.10731 * 15 14 13 18 18 N 1.30899 * 119.99992 * 161.72685 * 17 15 14 19 19 Si 1.86798 * 119.99958 * 341.72796 * 17 15 14 20 20 H 1.48501 * 109.47198 * 95.41460 * 19 17 15 21 21 H 1.48505 * 109.47110 * 215.41426 * 19 17 15 22 22 H 1.48499 * 109.47214 * 335.41144 * 19 17 15 23 23 C 1.40886 * 119.68393 * 359.72014 * 14 13 12 24 24 C 1.36339 * 119.84120 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.46709 * 288.80062 * 1 2 3 26 26 H 1.08997 * 109.47008 * 48.80521 * 1 2 3 27 27 H 1.08996 * 109.46782 * 168.80579 * 1 2 3 28 28 H 1.09005 * 109.47027 * 191.19435 * 3 2 1 29 29 H 1.08997 * 109.47280 * 311.19533 * 3 2 1 30 30 H 1.09001 * 109.47653 * 71.19733 * 3 2 1 31 31 H 1.00896 * 110.99916 * 180.02562 * 6 4 2 32 32 H 1.00900 * 110.99947 * 303.96146 * 6 4 2 33 33 H 1.09001 * 113.60889 * 270.83868 * 7 4 2 34 34 H 1.08996 * 113.66568 * 139.88857 * 7 4 2 35 35 H 0.96999 * 120.00017 * 285.86290 * 10 8 7 36 36 H 1.08003 * 119.91795 * 359.97438 * 12 11 10 37 37 H 1.08003 * 120.07976 * 180.28042 * 13 12 11 38 38 H 0.97002 * 120.00037 * 180.02562 * 18 17 15 39 39 H 1.08008 * 120.08110 * 180.02562 * 23 14 13 40 40 H 1.07994 * 119.92265 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1461 -0.9300 -1.0585 5 1 1.4940 -1.7540 -1.3483 6 7 2.7107 -0.2166 -2.2118 7 6 3.1928 -1.3159 0.0025 8 6 2.1461 -0.9280 1.0603 9 1 2.5651 -0.3969 1.9149 10 7 1.2697 -2.0347 1.4520 11 6 1.4372 -2.6497 2.6856 12 6 2.4453 -2.2148 3.5473 13 6 2.6125 -2.8109 4.7620 14 6 1.7719 -3.8757 5.1420 15 6 1.9424 -4.5012 6.3956 16 1 1.0936 -4.9373 6.9015 17 6 3.2106 -4.5563 6.9829 18 7 3.3288 -4.7987 8.2638 19 14 4.7357 -4.2840 5.9392 20 1 5.1529 -2.8619 6.0339 21 1 5.8334 -5.1555 6.4299 22 1 4.4334 -4.6181 4.5242 23 6 0.7598 -4.3129 4.2648 24 6 0.6008 -3.7041 3.0553 25 1 -0.3632 0.3312 0.9728 26 1 -0.3633 0.6768 -0.7733 27 1 -0.3633 -1.0081 -0.1995 28 1 3.1942 1.3533 -0.1995 29 1 1.6415 2.0076 -0.7733 30 1 1.9600 1.8735 0.9728 31 1 3.1028 -0.8628 -2.8801 32 1 2.0181 0.3755 -2.6451 33 1 4.0725 -0.6723 0.0022 34 1 3.4432 -2.3768 0.0045 35 1 0.5724 -2.3378 0.8497 36 1 3.0923 -1.4018 3.2526 37 1 3.3901 -2.4703 5.4297 38 1 4.2083 -4.8366 8.6711 39 1 0.1115 -5.1284 4.5497 40 1 -0.1748 -4.0378 2.3820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405241870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:37 Heat of formation + Delta-G solvation = 40.073577 kcal Electronic energy + Delta-G solvation = -19445.106349 eV Core-core repulsion = 16645.626582 eV Total energy + Delta-G solvation = -2799.479767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27976 -37.86896 -34.44766 -32.93395 -31.97754 -30.37808 -29.76380 -28.75554 -27.31227 -24.43838 -23.18284 -22.28997 -21.48607 -20.12522 -17.77044 -17.33323 -16.83764 -15.96066 -15.64677 -15.12832 -14.72488 -14.37790 -13.81872 -13.61397 -13.23572 -13.11228 -12.53403 -12.47937 -12.37685 -12.25145 -12.14437 -12.08620 -11.68558 -11.44705 -11.06180 -10.72753 -10.68936 -10.24538 -10.11704 -10.04308 -9.92262 -9.46504 -9.14424 -8.84639 -8.65768 -7.75990 -6.75386 -6.59029 -4.15428 2.71645 2.81201 3.21199 3.31140 3.42892 4.04046 4.12080 4.38311 4.45837 4.54296 4.66382 4.95887 5.02795 5.22502 5.41945 5.56064 5.63358 5.68945 5.72237 5.83750 5.92071 6.00415 6.03523 6.07611 6.10031 6.21100 6.34909 6.41344 6.56640 6.72902 6.92313 7.03575 7.17585 7.24930 7.26541 7.48234 7.60487 7.95691 8.08030 8.33362 8.50252 8.58304 8.85941 9.00424 10.29057 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.004907 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.748920 B = 5704.299626 C = 6085.212933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 C -0.114 4.114 4 C 0.068 3.932 5 H 0.056 0.944 6 N -0.836 5.836 7 C -0.150 4.150 8 C 0.152 3.848 9 H 0.089 0.911 10 N -0.738 5.738 11 C 0.093 3.907 12 C -0.142 4.142 13 C -0.198 4.198 14 C 0.060 3.940 15 C -0.456 4.456 16 H 0.086 0.914 17 C 0.083 3.917 18 N -0.824 5.824 19 Si 0.907 3.093 20 H -0.274 1.274 21 H -0.294 1.294 22 H -0.246 1.246 23 C -0.169 4.169 24 C -0.146 4.146 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.337 0.663 32 H 0.337 0.663 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.385 0.615 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.280 0.720 39 H 0.100 0.900 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 8.682 -17.191 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 C -0.172 4.172 4 C -0.043 4.043 5 H 0.074 0.926 6 N -0.365 5.365 7 C -0.190 4.190 8 C 0.043 3.957 9 H 0.107 0.893 10 N -0.372 5.372 11 C -0.004 4.004 12 C -0.164 4.164 13 C -0.218 4.218 14 C 0.056 3.944 15 C -0.486 4.486 16 H 0.104 0.896 17 C -0.133 4.133 18 N -0.451 5.451 19 Si 0.734 3.266 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.170 1.170 23 C -0.189 4.189 24 C -0.168 4.168 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.219 0.781 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.834 9.047 -16.347 18.702 hybrid contribution -0.223 -0.622 -1.133 1.311 sum -1.057 8.425 -17.480 19.433 Atomic orbital electron populations 1.21659 0.94420 1.01115 1.01905 1.22356 0.95067 0.95684 0.95986 1.21376 1.01554 0.93275 1.00967 1.22990 0.96383 0.94986 0.89920 0.92616 1.58873 1.39168 1.26153 1.12281 1.23646 0.97795 1.01622 0.95935 1.21519 0.90874 0.88142 0.95166 0.89314 1.43603 1.38305 1.37673 1.17608 1.17282 0.98987 0.97216 0.86916 1.20004 0.99331 1.01705 0.95375 1.20646 1.03973 0.99744 0.97396 1.17640 0.92248 0.91614 0.92854 1.19278 0.95612 1.32875 1.00815 0.89635 1.26042 1.00995 0.91690 0.94545 1.69741 1.26442 1.37856 1.11026 0.86387 0.79772 0.77954 0.82449 1.20000 1.22176 1.16953 1.20605 1.02813 1.01564 0.93925 1.19946 1.00439 0.98371 0.98017 0.91942 0.93166 0.92917 0.91339 0.92813 0.92828 0.85142 0.85064 0.89306 0.91453 0.78085 0.88712 0.88278 0.90936 0.88197 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.58 37.16 0.32 -1.09 16 2 C -0.09 -0.99 1.32 -153.69 -0.20 -1.19 16 3 C -0.11 -1.17 8.39 37.16 0.31 -0.86 16 4 C 0.07 0.73 4.27 -66.81 -0.29 0.45 16 5 H 0.06 0.62 7.96 -51.93 -0.41 0.20 16 6 N -0.84 -7.43 8.59 -3.90 -0.03 -7.46 16 7 C -0.15 -1.93 7.35 -25.83 -0.19 -2.12 16 8 C 0.15 2.12 3.51 -67.11 -0.24 1.88 16 9 H 0.09 1.36 6.13 -51.93 -0.32 1.04 16 10 N -0.74 -11.70 4.94 -51.24 -0.25 -11.96 16 11 C 0.09 1.87 6.67 -83.69 -0.56 1.31 16 12 C -0.14 -3.11 9.18 -39.77 -0.37 -3.48 16 13 C -0.20 -4.87 7.11 -39.27 -0.28 -5.15 16 14 C 0.06 1.55 5.10 -106.80 -0.54 1.01 16 15 C -0.46 -12.76 9.55 -37.87 -0.36 -13.12 16 16 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 17 C 0.08 2.28 5.40 -17.34 -0.09 2.18 16 18 N -0.82 -22.97 13.93 55.54 0.77 -22.19 16 19 Si 0.91 21.67 24.51 -169.99 -4.17 17.50 16 20 H -0.27 -6.35 6.70 56.52 0.38 -5.97 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.25 -6.02 6.87 56.52 0.39 -5.64 16 23 C -0.17 -3.97 9.74 -39.26 -0.38 -4.35 16 24 C -0.15 -3.04 9.82 -39.77 -0.39 -3.43 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.55 6.60 -51.93 -0.34 0.20 16 28 H 0.07 0.73 7.16 -51.93 -0.37 0.36 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.34 2.63 9.08 -39.29 -0.36 2.27 16 32 H 0.34 2.56 9.05 -39.29 -0.36 2.21 16 33 H 0.09 1.12 7.67 -51.93 -0.40 0.73 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.39 5.49 7.12 -40.82 -0.29 5.20 16 36 H 0.09 1.87 6.05 -52.48 -0.32 1.56 16 37 H 0.10 2.47 4.73 -52.48 -0.25 2.22 16 38 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 39 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 40 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -28.19 313.38 -8.18 -36.37 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.97 Total: 10.95 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -3.26 Total: -27.94 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.49 Total: -41.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.17 Total: 17.50 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.19 -8.18 -36.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405241870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.448 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds