Wall clock time and date at job start Mon Mar 30 2020 07:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.84770 * 2 1 4 4 C 1.53779 * 113.61636 * 228.69511 * 2 1 3 5 5 H 1.09004 * 113.61089 * 334.64893 * 4 2 1 6 6 N 1.46899 * 113.61672 * 105.46458 * 4 2 1 7 7 C 1.53954 * 87.11348 * 220.09047 * 4 2 1 8 8 C 1.53783 * 87.02063 * 25.35890 * 7 4 2 9 9 H 1.08998 * 113.61690 * 220.05298 * 8 7 4 10 10 N 1.46507 * 113.61119 * 89.23093 * 8 7 4 11 11 C 1.38851 * 119.99657 * 105.86744 * 10 8 7 12 12 C 1.39569 * 119.84588 * 359.72273 * 11 10 8 13 13 C 1.36338 * 120.16117 * 179.76514 * 12 11 10 14 14 C 1.40885 * 119.83950 * 0.53189 * 13 12 11 15 15 C 1.41135 * 120.16139 * 179.74724 * 14 13 12 16 16 H 1.08000 * 120.00380 * 150.11263 * 15 14 13 17 17 C 1.39870 * 119.99540 * 330.10731 * 15 14 13 18 18 N 1.30899 * 119.99992 * 161.72685 * 17 15 14 19 19 Si 1.86798 * 119.99958 * 341.72796 * 17 15 14 20 20 H 1.48501 * 109.47198 * 95.41460 * 19 17 15 21 21 H 1.48505 * 109.47110 * 215.41426 * 19 17 15 22 22 H 1.48499 * 109.47214 * 335.41144 * 19 17 15 23 23 C 1.40886 * 119.68393 * 359.72014 * 14 13 12 24 24 C 1.36339 * 119.84120 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.46709 * 288.80062 * 1 2 3 26 26 H 1.08997 * 109.47008 * 48.80521 * 1 2 3 27 27 H 1.08996 * 109.46782 * 168.80579 * 1 2 3 28 28 H 1.09005 * 109.47027 * 191.19435 * 3 2 1 29 29 H 1.08997 * 109.47280 * 311.19533 * 3 2 1 30 30 H 1.09001 * 109.47653 * 71.19733 * 3 2 1 31 31 H 1.00896 * 110.99916 * 180.02562 * 6 4 2 32 32 H 1.00900 * 110.99947 * 303.96146 * 6 4 2 33 33 H 1.09001 * 113.60889 * 270.83868 * 7 4 2 34 34 H 1.08996 * 113.66568 * 139.88857 * 7 4 2 35 35 H 0.96999 * 120.00017 * 285.86290 * 10 8 7 36 36 H 1.08003 * 119.91795 * 359.97438 * 12 11 10 37 37 H 1.08003 * 120.07976 * 180.28042 * 13 12 11 38 38 H 0.97002 * 120.00037 * 180.02562 * 18 17 15 39 39 H 1.08008 * 120.08110 * 180.02562 * 23 14 13 40 40 H 1.07994 * 119.92265 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1461 -0.9300 -1.0585 5 1 1.4940 -1.7540 -1.3483 6 7 2.7107 -0.2166 -2.2118 7 6 3.1928 -1.3159 0.0025 8 6 2.1461 -0.9280 1.0603 9 1 2.5651 -0.3969 1.9149 10 7 1.2697 -2.0347 1.4520 11 6 1.4372 -2.6497 2.6856 12 6 2.4453 -2.2148 3.5473 13 6 2.6125 -2.8109 4.7620 14 6 1.7719 -3.8757 5.1420 15 6 1.9424 -4.5012 6.3956 16 1 1.0936 -4.9373 6.9015 17 6 3.2106 -4.5563 6.9829 18 7 3.3288 -4.7987 8.2638 19 14 4.7357 -4.2840 5.9392 20 1 5.1529 -2.8619 6.0339 21 1 5.8334 -5.1555 6.4299 22 1 4.4334 -4.6181 4.5242 23 6 0.7598 -4.3129 4.2648 24 6 0.6008 -3.7041 3.0553 25 1 -0.3632 0.3312 0.9728 26 1 -0.3633 0.6768 -0.7733 27 1 -0.3633 -1.0081 -0.1995 28 1 3.1942 1.3533 -0.1995 29 1 1.6415 2.0076 -0.7733 30 1 1.9600 1.8735 0.9728 31 1 3.1028 -0.8628 -2.8801 32 1 2.0181 0.3755 -2.6451 33 1 4.0725 -0.6723 0.0022 34 1 3.4432 -2.3768 0.0045 35 1 0.5724 -2.3378 0.8497 36 1 3.0923 -1.4018 3.2526 37 1 3.3901 -2.4703 5.4297 38 1 4.2083 -4.8366 8.6711 39 1 0.1115 -5.1284 4.5497 40 1 -0.1748 -4.0378 2.3820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405241870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:36 Heat of formation + Delta-G solvation = 21.590802 kcal Electronic energy + Delta-G solvation = -19445.907822 eV Core-core repulsion = 16645.626582 eV Total energy + Delta-G solvation = -2800.281240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34424 -39.58040 -36.09322 -34.60876 -32.95051 -31.79593 -31.31369 -30.28564 -28.21608 -26.12593 -24.51933 -23.30088 -23.16029 -21.79942 -19.33347 -18.82123 -18.35624 -16.90830 -16.84645 -16.56579 -16.04090 -15.71732 -15.37790 -14.91310 -14.62846 -14.36526 -14.21962 -14.10989 -13.86837 -13.79064 -13.15932 -13.02625 -12.86951 -12.75610 -12.59047 -12.28808 -12.06523 -11.93413 -11.76950 -11.42285 -11.10175 -11.06834 -10.89307 -10.35540 -9.57531 -9.56160 -8.76991 -8.28286 -6.17176 0.88139 0.96633 1.28111 1.42446 1.51242 2.17919 2.70405 2.73199 3.45697 3.56175 3.64870 3.68995 4.03019 4.07770 4.28000 4.32246 4.34389 4.57337 4.67666 4.73099 4.83343 4.86448 4.96136 5.02027 5.04682 5.07524 5.10381 5.19483 5.20067 5.35239 5.45267 5.50971 5.56857 5.68934 5.77925 6.00381 6.25155 6.32635 6.44172 6.65579 6.68632 6.90706 6.98794 7.20873 8.33699 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.004907 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.748920 B = 5704.299626 C = 6085.212933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 C -0.112 4.112 4 C 0.082 3.918 5 H 0.059 0.941 6 N -0.836 5.836 7 C -0.148 4.148 8 C 0.134 3.866 9 H 0.076 0.924 10 N -0.725 5.725 11 C 0.127 3.873 12 C -0.159 4.159 13 C -0.201 4.201 14 C 0.026 3.974 15 C -0.490 4.490 16 H 0.050 0.950 17 C 0.044 3.956 18 N -0.870 5.870 19 Si 0.962 3.038 20 H -0.263 1.263 21 H -0.281 1.281 22 H -0.255 1.255 23 C -0.171 4.171 24 C -0.151 4.151 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.345 0.655 32 H 0.348 0.652 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.398 0.602 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.287 0.713 39 H 0.103 0.897 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 10.405 -21.105 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.078 4.078 3 C -0.170 4.170 4 C -0.030 4.030 5 H 0.076 0.924 6 N -0.367 5.367 7 C -0.189 4.189 8 C 0.026 3.974 9 H 0.094 0.906 10 N -0.357 5.357 11 C 0.027 3.973 12 C -0.181 4.181 13 C -0.221 4.221 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.068 0.932 17 C -0.167 4.167 18 N -0.499 5.499 19 Si 0.787 3.213 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.179 1.179 23 C -0.191 4.191 24 C -0.173 4.173 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.234 0.766 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.934 10.798 -20.320 23.030 hybrid contribution -0.343 -1.021 -0.197 1.095 sum -1.277 9.777 -20.517 22.763 Atomic orbital electron populations 1.21659 0.93650 1.01785 1.01941 1.22261 0.95577 0.95619 0.94329 1.21369 1.01360 0.92814 1.01410 1.22798 0.95149 0.94870 0.90193 0.92364 1.58785 1.39396 1.26280 1.12216 1.23586 0.98099 1.00721 0.96446 1.21765 0.91707 0.88232 0.95717 0.90601 1.43630 1.38591 1.37461 1.16060 1.17456 0.96711 0.95512 0.87598 1.20223 1.00556 1.02488 0.94852 1.20697 1.03535 0.99534 0.98363 1.17737 0.94257 0.92781 0.92919 1.19278 0.95231 1.35183 1.02503 0.93218 1.26674 1.03075 0.91578 0.95390 1.69780 1.27374 1.40589 1.12179 0.85539 0.77033 0.78522 0.80235 1.18868 1.20832 1.17933 1.20804 1.01907 1.01711 0.94635 1.20245 1.01376 0.98184 0.97530 0.93152 0.91238 0.92646 0.91817 0.91143 0.93180 0.84193 0.83813 0.89049 0.92948 0.76563 0.86556 0.89060 0.90261 0.87893 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.58 71.98 0.62 -1.65 16 2 C -0.08 -1.41 1.32 -51.65 -0.07 -1.48 16 3 C -0.11 -1.90 8.39 71.98 0.60 -1.30 16 4 C 0.08 1.43 4.27 45.50 0.19 1.63 16 5 H 0.06 1.03 7.96 -2.38 -0.02 1.01 16 6 N -0.84 -11.57 8.59 -166.25 -1.43 -13.00 16 7 C -0.15 -3.38 7.35 31.18 0.23 -3.15 16 8 C 0.13 3.32 3.51 45.52 0.16 3.47 16 9 H 0.08 2.12 6.13 -2.39 -0.01 2.11 16 10 N -0.72 -20.42 4.94 -316.03 -1.56 -21.99 16 11 C 0.13 4.77 6.67 38.67 0.26 5.03 16 12 C -0.16 -6.68 9.18 22.15 0.20 -6.47 16 13 C -0.20 -9.91 7.11 22.47 0.16 -9.75 16 14 C 0.03 1.39 5.10 -21.27 -0.11 1.28 16 15 C -0.49 -29.01 9.55 23.38 0.22 -28.79 16 16 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 17 C 0.04 2.49 5.40 85.23 0.46 2.95 16 18 N -0.87 -50.84 13.93 21.82 0.30 -50.53 16 19 Si 0.96 45.66 24.51 68.60 1.68 47.34 16 20 H -0.26 -11.86 6.70 99.48 0.67 -11.19 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.26 -12.33 6.87 99.48 0.68 -11.65 16 23 C -0.17 -7.98 9.74 22.48 0.22 -7.76 16 24 C -0.15 -5.92 9.82 22.15 0.22 -5.70 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.91 6.60 -2.39 -0.02 0.90 16 28 H 0.06 1.16 7.16 -2.38 -0.02 1.14 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.35 4.08 9.08 -89.70 -0.81 3.27 16 32 H 0.35 3.77 9.05 -89.69 -0.81 2.96 16 33 H 0.09 2.06 7.67 -2.39 -0.02 2.04 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.40 9.62 7.12 -92.71 -0.66 8.96 16 36 H 0.12 4.35 6.05 -2.91 -0.02 4.33 16 37 H 0.09 4.57 4.73 -2.91 -0.01 4.55 16 38 H 0.29 15.19 8.30 -92.71 -0.77 14.42 16 39 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -63.08 313.38 1.08 -62.00 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -1.28 Total: 27.84 kcal Atomic # 6 Polarization: -55.04 SS G_CDS: 3.37 Total: -51.67 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -2.69 Total: -85.51 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.68 Total: 47.34 kcal Total: -63.08 1.08 -62.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405241870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.592 kcal (2) G-P(sol) polarization free energy of solvation -63.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds