Wall clock time and date at job start Mon Mar 30 2020 07:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 112.90701 * 2 1 4 4 C 1.54050 * 113.61264 * 228.63670 * 2 1 3 5 5 H 1.09005 * 113.61686 * 156.38168 * 4 2 1 6 6 N 1.46902 * 113.62304 * 25.47066 * 4 2 1 7 7 C 1.53785 * 87.07584 * 270.92437 * 4 2 1 8 8 C 1.53774 * 87.08042 * 334.57178 * 7 4 2 9 9 H 1.09003 * 113.61609 * 140.06508 * 8 7 4 10 10 N 1.46507 * 113.61744 * 270.88187 * 8 7 4 11 11 C 1.39681 * 120.00001 * 254.13899 * 10 8 7 12 12 C 1.39339 * 119.95555 * 0.02562 * 11 10 8 13 13 C 1.38477 * 120.42642 * 180.02562 * 12 11 10 14 14 C 1.37685 * 120.32632 * 359.96826 * 13 12 11 15 15 C 1.40754 * 119.89223 * 0.02710 * 14 13 12 16 16 C 1.41408 * 120.20573 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99534 * 155.06134 * 16 15 14 18 18 C 1.39927 * 120.00046 * 334.78604 * 16 15 14 19 19 N 1.30834 * 120.00240 * 342.34447 * 18 16 15 20 20 Si 1.86803 * 119.99989 * 162.34727 * 18 16 15 21 21 H 1.48491 * 109.47104 * 94.51713 * 20 18 16 22 22 H 1.48504 * 109.47098 * 214.51859 * 20 18 16 23 23 H 1.48505 * 109.46771 * 334.51763 * 20 18 16 24 24 C 1.38281 * 119.95015 * 180.25256 * 11 10 8 25 25 H 1.09000 * 109.47149 * 288.75215 * 1 2 3 26 26 H 1.09008 * 109.47024 * 48.74901 * 1 2 3 27 27 H 1.09002 * 109.47423 * 168.74291 * 1 2 3 28 28 H 1.09000 * 109.47024 * 191.24819 * 3 2 1 29 29 H 1.09000 * 109.47454 * 311.24736 * 3 2 1 30 30 H 1.08997 * 109.46795 * 71.25412 * 3 2 1 31 31 H 1.00899 * 111.00296 * 182.99835 * 6 4 2 32 32 H 1.00896 * 110.99815 * 306.95760 * 6 4 2 33 33 H 1.08997 * 113.61689 * 220.01980 * 7 4 2 34 34 H 1.08999 * 113.61440 * 89.11763 * 7 4 2 35 35 H 0.97001 * 119.99451 * 74.13255 * 10 8 7 36 36 H 1.07998 * 119.78327 * 0.02562 * 12 11 10 37 37 H 1.07997 * 119.83482 * 179.97438 * 13 12 11 38 38 H 1.07995 * 120.05612 * 180.02562 * 14 13 12 39 39 H 0.96996 * 119.99795 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.16551 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1470 -0.9328 -1.0594 5 1 3.1604 -0.6547 -1.3490 6 7 1.2694 -1.1764 -2.2120 7 6 2.0928 -2.0444 0.0019 8 6 2.1460 -0.9291 1.0593 9 1 1.4950 -1.1075 1.9152 10 7 3.5076 -0.5538 1.4486 11 6 4.0137 -0.9501 2.6887 12 6 3.2230 -1.7029 3.5545 13 6 3.7147 -2.1006 4.7864 14 6 4.9918 -1.7567 5.1692 15 6 5.8023 -0.9966 4.3051 16 6 7.1147 -0.6392 4.6917 17 1 7.8608 -0.4295 3.9397 18 6 7.4451 -0.5518 6.0486 19 7 6.4991 -0.4554 6.9473 20 14 9.2367 -0.5724 6.5770 21 1 9.7262 0.8220 6.7216 22 1 9.3611 -1.2781 7.8777 23 1 10.0470 -1.2777 5.5516 24 6 5.2971 -0.5909 3.0573 25 1 -0.3633 0.3304 0.9731 26 1 -0.3633 0.6777 -0.7727 27 1 -0.3634 -1.0079 -0.2006 28 1 3.1953 1.3517 -0.2005 29 1 1.6428 2.0078 -0.7727 30 1 1.9626 1.8725 0.9731 31 1 1.6910 -1.8288 -2.8560 32 1 0.3613 -1.4989 -1.9132 33 1 2.9712 -2.6898 0.0035 34 1 1.1565 -2.6023 0.0025 35 1 4.0575 -0.0301 0.8451 36 1 2.2201 -1.9779 3.2629 37 1 3.0934 -2.6835 5.4502 38 1 5.3710 -2.0695 6.1307 39 1 6.7282 -0.3952 7.8879 40 1 5.9095 -0.0040 2.3888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405498770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:39 Heat of formation + Delta-G solvation = 34.914843 kcal Electronic energy + Delta-G solvation = -19319.294566 eV Core-core repulsion = 16519.591100 eV Total energy + Delta-G solvation = -2799.703466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29126 -37.44985 -34.40612 -32.92726 -31.85020 -30.04666 -29.66171 -27.71698 -26.78263 -25.19410 -23.18459 -22.37736 -20.73882 -20.22821 -18.00159 -17.31744 -16.15778 -15.70925 -15.47182 -15.05731 -14.51904 -14.27787 -13.85059 -13.31192 -13.23863 -12.90426 -12.56871 -12.39205 -12.28142 -12.09045 -12.01465 -11.65387 -11.48154 -11.30434 -11.09296 -10.88233 -10.62713 -10.50731 -10.24296 -9.90322 -9.73024 -9.28164 -9.17838 -8.75447 -8.56097 -7.36757 -6.69502 -6.19735 -4.29403 2.86797 3.10702 3.15645 3.23377 3.37013 3.97722 4.11110 4.41329 4.49355 4.70747 4.80659 4.95835 5.03413 5.25752 5.50739 5.64236 5.74079 5.85537 5.86273 5.88070 5.95086 6.00275 6.08143 6.20188 6.34212 6.40127 6.42256 6.58159 7.04529 7.05187 7.10072 7.13577 7.34810 7.36290 7.41592 7.80887 7.92986 8.15965 8.26561 8.53066 8.64845 8.80508 9.01523 9.13475 10.26800 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039423 B = 0.004191 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.074945 B = 6679.243973 C = 6879.421220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.090 4.090 3 C -0.128 4.128 4 C 0.082 3.918 5 H 0.098 0.902 6 N -0.839 5.839 7 C -0.200 4.200 8 C 0.155 3.845 9 H 0.089 0.911 10 N -0.740 5.740 11 C 0.225 3.775 12 C -0.301 4.301 13 C -0.075 4.075 14 C -0.199 4.199 15 C 0.142 3.858 16 C -0.466 4.466 17 H 0.075 0.925 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.904 3.096 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.288 4.288 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.337 0.663 32 H 0.339 0.661 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.388 0.612 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.278 0.722 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.351 -0.699 -10.971 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.092 4.092 3 C -0.186 4.186 4 C -0.030 4.030 5 H 0.116 0.884 6 N -0.368 5.368 7 C -0.242 4.242 8 C 0.046 3.954 9 H 0.106 0.894 10 N -0.371 5.371 11 C 0.127 3.873 12 C -0.323 4.323 13 C -0.094 4.094 14 C -0.219 4.219 15 C 0.139 3.861 16 C -0.496 4.496 17 H 0.093 0.907 18 C -0.139 4.139 19 N -0.418 5.418 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.312 4.312 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.222 0.778 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.457 0.046 -10.844 13.752 hybrid contribution 0.981 -0.818 0.477 1.363 sum -7.475 -0.772 -10.367 12.804 Atomic orbital electron populations 1.21443 0.92928 1.01478 1.01897 1.22446 0.95923 0.95244 0.95608 1.21574 1.00199 0.95131 1.01664 1.23059 0.96486 0.95459 0.88012 0.88366 1.58698 1.06444 1.54188 1.17458 1.24342 1.01976 0.98333 0.99565 1.21490 0.85742 0.93117 0.95073 0.89356 1.44148 1.13135 1.61934 1.17921 1.17461 0.92487 0.93328 0.83994 1.19885 0.99570 1.14999 0.97890 1.20436 0.95770 0.98546 0.94685 1.21149 0.94576 1.04507 1.01658 1.17328 0.92230 0.86893 0.89650 1.19537 0.96384 1.41843 0.91791 0.90685 1.25877 0.99175 0.92240 0.96639 1.69865 1.34358 1.34943 1.02603 0.86374 0.82977 0.79063 0.78706 1.19679 1.20102 1.18498 1.20399 0.94981 1.14149 1.01683 0.92359 0.91866 0.92884 0.92767 0.92783 0.92266 0.85022 0.84672 0.91083 0.90385 0.77767 0.89633 0.89725 0.86909 0.91073 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.20 37.15 0.30 -0.94 16 2 C -0.09 -1.09 1.34 -153.56 -0.21 -1.30 16 3 C -0.13 -1.59 8.59 37.16 0.32 -1.27 16 4 C 0.08 0.94 4.38 -66.76 -0.29 0.65 16 5 H 0.10 1.21 7.97 -51.93 -0.41 0.80 16 6 N -0.84 -8.11 9.33 -3.85 -0.04 -8.15 16 7 C -0.20 -2.56 7.25 -25.92 -0.19 -2.75 16 8 C 0.15 2.29 3.53 -67.12 -0.24 2.05 16 9 H 0.09 1.42 6.15 -51.93 -0.32 1.11 16 10 N -0.74 -13.09 4.97 -51.43 -0.26 -13.35 16 11 C 0.23 5.06 6.64 -83.86 -0.56 4.50 16 12 C -0.30 -6.87 9.27 -39.08 -0.36 -7.23 16 13 C -0.08 -1.83 10.01 -39.70 -0.40 -2.22 16 14 C -0.20 -5.32 8.69 -38.83 -0.34 -5.66 16 15 C 0.14 3.88 5.56 -106.85 -0.59 3.29 16 16 C -0.47 -12.66 9.05 -37.74 -0.34 -13.00 16 17 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 18 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 19 N -0.79 -20.96 10.99 55.55 0.61 -20.34 16 20 Si 0.90 18.98 29.60 -169.99 -5.03 13.95 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.29 -7.21 9.63 -38.67 -0.37 -7.58 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.05 0.49 6.18 -51.93 -0.32 0.17 16 28 H 0.05 0.68 6.61 -51.93 -0.34 0.33 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.34 2.83 9.08 -39.29 -0.36 2.47 16 32 H 0.34 2.94 6.98 -39.29 -0.27 2.66 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.89 7.59 -51.93 -0.39 0.50 16 35 H 0.39 6.41 7.13 -40.82 -0.29 6.12 16 36 H 0.09 1.77 6.06 -52.49 -0.32 1.45 16 37 H 0.08 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.11 3.12 6.20 -52.49 -0.33 2.79 16 39 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 316.46 15.07 4.77 4.77 Total: -1.00 -28.05 316.46 -9.16 -37.21 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -5.87 Total: 15.46 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: -3.35 Total: -29.54 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.32 Total: -41.84 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.05 -9.16 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405498770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.122 kcal (2) G-P(sol) polarization free energy of solvation -28.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds