Wall clock time and date at job start Mon Mar 30 2020 07:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 112.90701 * 2 1 4 4 C 1.54050 * 113.61264 * 228.63670 * 2 1 3 5 5 H 1.09005 * 113.61686 * 156.38168 * 4 2 1 6 6 N 1.46902 * 113.62304 * 25.47066 * 4 2 1 7 7 C 1.53785 * 87.07584 * 270.92437 * 4 2 1 8 8 C 1.53774 * 87.08042 * 334.57178 * 7 4 2 9 9 H 1.09003 * 113.61609 * 140.06508 * 8 7 4 10 10 N 1.46507 * 113.61744 * 270.88187 * 8 7 4 11 11 C 1.39681 * 120.00001 * 254.13899 * 10 8 7 12 12 C 1.39339 * 119.95555 * 0.02562 * 11 10 8 13 13 C 1.38477 * 120.42642 * 180.02562 * 12 11 10 14 14 C 1.37685 * 120.32632 * 359.96826 * 13 12 11 15 15 C 1.40754 * 119.89223 * 0.02710 * 14 13 12 16 16 C 1.41408 * 120.20573 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99534 * 155.06134 * 16 15 14 18 18 C 1.39927 * 120.00046 * 334.78604 * 16 15 14 19 19 N 1.30834 * 120.00240 * 342.34447 * 18 16 15 20 20 Si 1.86803 * 119.99989 * 162.34727 * 18 16 15 21 21 H 1.48491 * 109.47104 * 94.51713 * 20 18 16 22 22 H 1.48504 * 109.47098 * 214.51859 * 20 18 16 23 23 H 1.48505 * 109.46771 * 334.51763 * 20 18 16 24 24 C 1.38281 * 119.95015 * 180.25256 * 11 10 8 25 25 H 1.09000 * 109.47149 * 288.75215 * 1 2 3 26 26 H 1.09008 * 109.47024 * 48.74901 * 1 2 3 27 27 H 1.09002 * 109.47423 * 168.74291 * 1 2 3 28 28 H 1.09000 * 109.47024 * 191.24819 * 3 2 1 29 29 H 1.09000 * 109.47454 * 311.24736 * 3 2 1 30 30 H 1.08997 * 109.46795 * 71.25412 * 3 2 1 31 31 H 1.00899 * 111.00296 * 182.99835 * 6 4 2 32 32 H 1.00896 * 110.99815 * 306.95760 * 6 4 2 33 33 H 1.08997 * 113.61689 * 220.01980 * 7 4 2 34 34 H 1.08999 * 113.61440 * 89.11763 * 7 4 2 35 35 H 0.97001 * 119.99451 * 74.13255 * 10 8 7 36 36 H 1.07998 * 119.78327 * 0.02562 * 12 11 10 37 37 H 1.07997 * 119.83482 * 179.97438 * 13 12 11 38 38 H 1.07995 * 120.05612 * 180.02562 * 14 13 12 39 39 H 0.96996 * 119.99795 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.16551 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1470 -0.9328 -1.0594 5 1 3.1604 -0.6547 -1.3490 6 7 1.2694 -1.1764 -2.2120 7 6 2.0928 -2.0444 0.0019 8 6 2.1460 -0.9291 1.0593 9 1 1.4950 -1.1075 1.9152 10 7 3.5076 -0.5538 1.4486 11 6 4.0137 -0.9501 2.6887 12 6 3.2230 -1.7029 3.5545 13 6 3.7147 -2.1006 4.7864 14 6 4.9918 -1.7567 5.1692 15 6 5.8023 -0.9966 4.3051 16 6 7.1147 -0.6392 4.6917 17 1 7.8608 -0.4295 3.9397 18 6 7.4451 -0.5518 6.0486 19 7 6.4991 -0.4554 6.9473 20 14 9.2367 -0.5724 6.5770 21 1 9.7262 0.8220 6.7216 22 1 9.3611 -1.2781 7.8777 23 1 10.0470 -1.2777 5.5516 24 6 5.2971 -0.5909 3.0573 25 1 -0.3633 0.3304 0.9731 26 1 -0.3633 0.6777 -0.7727 27 1 -0.3634 -1.0079 -0.2006 28 1 3.1953 1.3517 -0.2005 29 1 1.6428 2.0078 -0.7727 30 1 1.9626 1.8725 0.9731 31 1 1.6910 -1.8288 -2.8560 32 1 0.3613 -1.4989 -1.9132 33 1 2.9712 -2.6898 0.0035 34 1 1.1565 -2.6023 0.0025 35 1 4.0575 -0.0301 0.8451 36 1 2.2201 -1.9779 3.2629 37 1 3.0934 -2.6835 5.4502 38 1 5.3710 -2.0695 6.1307 39 1 6.7282 -0.3952 7.8879 40 1 5.9095 -0.0040 2.3888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405498770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:39 Heat of formation + Delta-G solvation = 18.053774 kcal Electronic energy + Delta-G solvation = -19320.025717 eV Core-core repulsion = 16519.591100 eV Total energy + Delta-G solvation = -2800.434617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40067 -39.25779 -36.12008 -34.54192 -32.89437 -31.71652 -31.08315 -29.01855 -28.07394 -27.12361 -24.42828 -23.42430 -22.59045 -21.97012 -19.34132 -18.93930 -17.48525 -17.10579 -16.80122 -16.52014 -16.17648 -15.70104 -15.07095 -14.72478 -14.51753 -14.38806 -13.98037 -13.93832 -13.65147 -13.22997 -13.14044 -12.98999 -12.96116 -12.77293 -12.61174 -12.46286 -12.15406 -11.89138 -11.59482 -11.50800 -11.25612 -11.01637 -10.89642 -10.37563 -9.46134 -9.33781 -8.61159 -7.93239 -6.32932 1.04516 1.33418 1.38800 1.51973 1.59073 2.22591 2.70241 2.80034 3.44419 3.51905 3.78086 3.86215 3.96964 4.03950 4.31069 4.48441 4.54708 4.56886 4.72945 4.80215 4.84941 4.93839 4.99017 5.06771 5.08400 5.12990 5.16103 5.18086 5.28963 5.39425 5.43184 5.46836 5.63138 5.95551 6.02389 6.19846 6.26287 6.31458 6.63253 6.66492 6.89755 7.01721 7.04298 7.24345 8.37474 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039423 B = 0.004191 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.074945 B = 6679.243973 C = 6879.421220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.081 4.081 3 C -0.129 4.129 4 C 0.093 3.907 5 H 0.090 0.910 6 N -0.836 5.836 7 C -0.191 4.191 8 C 0.136 3.864 9 H 0.078 0.922 10 N -0.730 5.730 11 C 0.237 3.763 12 C -0.303 4.303 13 C -0.075 4.075 14 C -0.232 4.232 15 C 0.114 3.886 16 C -0.505 4.505 17 H 0.072 0.928 18 C 0.037 3.963 19 N -0.824 5.824 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.260 1.260 24 C -0.312 4.312 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.347 0.653 32 H 0.348 0.652 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.394 0.606 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.287 0.713 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 -0.839 -12.389 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.082 4.082 3 C -0.186 4.186 4 C -0.019 4.019 5 H 0.108 0.892 6 N -0.366 5.366 7 C -0.232 4.232 8 C 0.029 3.971 9 H 0.096 0.904 10 N -0.360 5.360 11 C 0.136 3.864 12 C -0.326 4.326 13 C -0.094 4.094 14 C -0.252 4.252 15 C 0.111 3.889 16 C -0.534 4.534 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.450 5.450 20 Si 0.801 3.199 21 H -0.187 1.187 22 H -0.189 1.189 23 H -0.184 1.184 24 C -0.336 4.336 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.229 0.771 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.578 -0.092 -12.316 15.602 hybrid contribution 1.160 -0.764 0.806 1.606 sum -8.419 -0.856 -11.510 14.285 Atomic orbital electron populations 1.21460 0.91192 1.02722 1.02183 1.22414 0.97102 0.94504 0.94219 1.21579 1.00135 0.95557 1.01365 1.22856 0.96453 0.94318 0.88323 0.89167 1.58650 1.06584 1.54770 1.16600 1.24306 1.02209 0.97849 0.98869 1.21774 0.83891 0.95672 0.95790 0.90385 1.44164 1.14465 1.61132 1.16253 1.17508 0.91538 0.91931 0.85439 1.20181 1.00654 1.14411 0.97323 1.20723 0.95070 0.98051 0.95571 1.21075 0.96064 1.06644 1.01462 1.17688 0.92890 0.87486 0.90828 1.19800 0.96774 1.43915 0.92940 0.91031 1.26748 1.03910 0.91105 0.96021 1.69922 1.36663 1.35205 1.03219 0.85226 0.76774 0.79442 0.78413 1.18692 1.18930 1.18350 1.20513 0.96377 1.15244 1.01467 0.92624 0.90873 0.91403 0.93279 0.91374 0.93616 0.83922 0.83670 0.92856 0.88371 0.77068 0.87042 0.87487 0.88731 0.90276 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.20 71.98 0.59 -1.48 16 2 C -0.08 -1.76 1.34 -51.57 -0.07 -1.83 16 3 C -0.13 -2.98 8.59 71.98 0.62 -2.36 16 4 C 0.09 1.90 4.38 45.53 0.20 2.10 16 5 H 0.09 2.04 7.97 -2.38 -0.02 2.02 16 6 N -0.84 -13.36 9.33 -166.10 -1.55 -14.91 16 7 C -0.19 -4.42 7.25 31.12 0.23 -4.19 16 8 C 0.14 3.78 3.53 45.51 0.16 3.94 16 9 H 0.08 2.35 6.15 -2.39 -0.01 2.34 16 10 N -0.73 -25.29 4.97 -316.63 -1.57 -26.86 16 11 C 0.24 10.65 6.64 38.17 0.25 10.90 16 12 C -0.30 -13.65 9.27 22.59 0.21 -13.44 16 13 C -0.08 -3.67 10.01 22.20 0.22 -3.45 16 14 C -0.23 -12.87 8.69 22.75 0.20 -12.67 16 15 C 0.11 6.49 5.56 -21.31 -0.12 6.37 16 16 C -0.50 -28.54 9.05 23.46 0.21 -28.33 16 17 H 0.07 3.92 7.91 -2.91 -0.02 3.89 16 18 C 0.04 1.94 5.14 85.25 0.44 2.38 16 19 N -0.82 -44.85 10.99 21.82 0.24 -44.61 16 20 Si 0.98 39.49 29.60 68.60 2.03 41.52 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 C -0.31 -16.05 9.63 22.86 0.22 -15.83 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.07 0.99 6.18 -2.39 -0.01 0.98 16 28 H 0.05 1.17 6.61 -2.39 -0.02 1.15 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.35 4.70 9.08 -89.69 -0.81 3.89 16 32 H 0.35 4.66 6.98 -89.70 -0.63 4.04 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.90 7.59 -2.39 -0.02 1.88 16 35 H 0.39 12.80 7.13 -92.71 -0.66 12.14 16 36 H 0.11 4.40 6.06 -2.91 -0.02 4.38 16 37 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 38 H 0.09 5.49 6.20 -2.91 -0.02 5.47 16 39 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 40 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -62.07 316.46 1.47 -60.60 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -1.03 Total: 42.17 kcal Atomic # 6 Polarization: -61.27 SS G_CDS: 3.36 Total: -57.91 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -2.88 Total: -86.38 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -62.07 1.47 -60.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405498770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.655 kcal (2) G-P(sol) polarization free energy of solvation -62.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds