Wall clock time and date at job start Mon Mar 30 2020 07:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 112.90785 * 2 1 4 4 C 1.53777 * 113.61586 * 228.73984 * 2 1 3 5 5 H 1.09001 * 113.69203 * 156.32676 * 4 2 1 6 6 N 1.46901 * 113.61260 * 25.43769 * 4 2 1 7 7 C 1.53772 * 87.08321 * 270.88878 * 4 2 1 8 8 C 1.53781 * 87.08500 * 334.56656 * 7 4 2 9 9 H 1.09001 * 113.61425 * 270.88597 * 8 7 4 10 10 N 1.46493 * 113.61579 * 140.06351 * 8 7 4 11 11 C 1.39687 * 119.99714 * 105.86713 * 10 8 7 12 12 C 1.39335 * 119.95531 * 359.72164 * 11 10 8 13 13 C 1.38477 * 120.42726 * 179.76123 * 12 11 10 14 14 C 1.37691 * 120.32403 * 0.51718 * 13 12 11 15 15 C 1.40757 * 119.89228 * 359.74379 * 14 13 12 16 16 C 1.41401 * 120.20486 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99829 * 155.25621 * 16 15 14 18 18 C 1.39930 * 120.00316 * 335.24963 * 16 15 14 19 19 N 1.30830 * 120.00040 * 342.21122 * 18 16 15 20 20 Si 1.86796 * 120.00254 * 162.21010 * 18 16 15 21 21 H 1.48502 * 109.47267 * 94.66151 * 20 18 16 22 22 H 1.48494 * 109.47310 * 214.65884 * 20 18 16 23 23 H 1.48502 * 109.47126 * 334.66505 * 20 18 16 24 24 C 1.38283 * 119.94797 * 180.02562 * 11 10 8 25 25 H 1.08993 * 109.47086 * 288.75459 * 1 2 3 26 26 H 1.09003 * 109.46867 * 48.75147 * 1 2 3 27 27 H 1.08994 * 109.46920 * 168.75265 * 1 2 3 28 28 H 1.08999 * 109.47024 * 191.25038 * 3 2 1 29 29 H 1.08999 * 109.46918 * 311.24399 * 3 2 1 30 30 H 1.08996 * 109.47120 * 71.24781 * 3 2 1 31 31 H 1.00899 * 111.00238 * 182.99183 * 6 4 2 32 32 H 1.00897 * 111.00233 * 306.94560 * 6 4 2 33 33 H 1.09009 * 113.61602 * 220.02176 * 7 4 2 34 34 H 1.09000 * 113.69643 * 89.13010 * 7 4 2 35 35 H 0.97002 * 120.00258 * 285.86659 * 10 8 7 36 36 H 1.08001 * 119.78148 * 0.02562 * 12 11 10 37 37 H 1.07994 * 119.83619 * 180.25988 * 13 12 11 38 38 H 1.07997 * 120.05303 * 179.76396 * 14 13 12 39 39 H 0.96998 * 120.00470 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.16743 * 359.94952 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1461 -0.9292 -1.0592 5 1 3.1591 -0.6511 -1.3499 6 7 1.2681 -1.1713 -2.2118 7 6 2.0929 -2.0425 0.0002 8 6 2.1460 -0.9290 1.0595 9 1 3.1590 -0.6498 1.3492 10 7 1.2717 -1.1712 2.2098 11 6 1.8204 -1.5578 3.4348 12 6 3.1988 -1.7185 3.5601 13 6 3.7536 -2.0968 4.7712 14 6 2.9473 -2.3286 5.8630 15 6 1.5526 -2.1756 5.7502 16 6 0.7183 -2.4125 6.8671 17 1 -0.2496 -1.9374 6.9285 18 6 1.1467 -3.2627 7.8926 19 7 2.1300 -4.0994 7.6808 20 14 0.3148 -3.2031 9.5640 21 1 -0.7499 -4.2366 9.6242 22 1 1.3189 -3.4645 10.6263 23 1 -0.2861 -1.8608 9.7702 24 6 0.9942 -1.7867 4.5198 25 1 -0.3633 0.3304 0.9730 26 1 -0.3633 0.6776 -0.7727 27 1 -0.3633 -1.0079 -0.2004 28 1 3.1954 1.3517 -0.2005 29 1 1.6429 2.0077 -0.7727 30 1 1.9627 1.8726 0.9731 31 1 1.6896 -1.8224 -2.8570 32 1 0.3602 -1.4947 -1.9132 33 1 2.9717 -2.6875 0.0004 34 1 1.1574 -2.6019 0.0012 35 1 0.3119 -1.0630 2.1208 36 1 3.8389 -1.5428 2.7082 37 1 4.8235 -2.2145 4.8587 38 1 3.3843 -2.6271 6.8044 39 1 2.4267 -4.6890 8.3916 40 1 -0.0747 -1.6664 4.4229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405498772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:42 Heat of formation + Delta-G solvation = 33.341676 kcal Electronic energy + Delta-G solvation = -19300.306585 eV Core-core repulsion = 16500.534901 eV Total energy + Delta-G solvation = -2799.771684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25655 -37.45703 -34.42400 -32.93449 -31.82415 -30.13700 -29.65696 -27.76279 -26.92624 -25.17184 -22.90269 -22.40621 -20.78995 -20.05142 -18.19877 -17.33066 -16.27734 -15.66544 -15.56957 -14.97910 -14.46952 -14.08855 -13.95462 -13.43889 -13.16870 -12.88580 -12.57160 -12.31474 -12.26389 -12.16129 -11.95135 -11.65586 -11.60288 -11.23282 -11.04883 -10.82967 -10.66913 -10.41050 -10.29896 -10.12659 -9.71842 -9.29574 -9.16409 -8.74890 -8.56040 -7.36562 -6.69430 -6.17262 -4.29165 2.86841 3.10581 3.15612 3.24100 3.37840 3.98101 4.18475 4.46102 4.48510 4.70557 4.82292 4.86350 5.04687 5.26698 5.51666 5.61517 5.65166 5.76791 5.86792 5.87992 5.96523 6.02424 6.05273 6.16352 6.33848 6.37837 6.45294 6.58620 7.03370 7.05621 7.10205 7.13605 7.33395 7.36794 7.43417 7.81845 7.93771 8.16391 8.27678 8.54052 8.66728 8.81385 9.01978 9.14438 10.26700 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038980 B = 0.004179 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.137886 B = 6698.898540 C = 6915.830594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 C -0.132 4.132 4 C 0.079 3.921 5 H 0.101 0.899 6 N -0.837 5.837 7 C -0.197 4.197 8 C 0.154 3.846 9 H 0.102 0.898 10 N -0.747 5.747 11 C 0.224 3.776 12 C -0.302 4.302 13 C -0.075 4.075 14 C -0.200 4.200 15 C 0.142 3.858 16 C -0.465 4.465 17 H 0.075 0.925 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.290 4.290 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.338 0.662 32 H 0.341 0.659 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.388 0.612 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.278 0.722 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 4.718 -12.711 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 C -0.189 4.189 4 C -0.033 4.033 5 H 0.119 0.881 6 N -0.366 5.366 7 C -0.239 4.239 8 C 0.046 3.954 9 H 0.119 0.881 10 N -0.379 5.379 11 C 0.126 3.874 12 C -0.325 4.325 13 C -0.094 4.094 14 C -0.220 4.220 15 C 0.139 3.861 16 C -0.495 4.495 17 H 0.093 0.907 18 C -0.139 4.139 19 N -0.418 5.418 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.314 4.314 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.223 0.777 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.258 5.321 -12.833 13.894 hybrid contribution -0.637 -1.198 1.077 1.733 sum -0.895 4.123 -11.755 12.489 Atomic orbital electron populations 1.21423 0.93356 1.01538 1.01865 1.22389 0.96187 0.95059 0.95329 1.21674 1.00163 0.95342 1.01712 1.22854 0.96633 0.95679 0.88152 0.88145 1.58701 1.06483 1.54262 1.17146 1.24382 1.02265 0.98398 0.98830 1.22031 0.95461 0.93588 0.84359 0.88059 1.44434 1.07282 1.78171 1.07974 1.17502 0.92323 0.93265 0.84331 1.19865 0.92328 1.22098 0.98166 1.20437 0.97065 0.98503 0.93406 1.21157 0.93505 1.09201 0.98137 1.17331 0.92020 0.86220 0.90536 1.19543 1.03135 1.24447 1.02397 0.90691 1.25882 0.94389 0.93463 1.00215 1.69863 1.23508 1.14820 1.33582 0.86372 0.79642 0.79699 0.81400 1.19695 1.20095 1.18482 1.20400 0.96517 1.21381 0.93087 0.92147 0.91930 0.92821 0.92722 0.92635 0.92386 0.84990 0.84511 0.91638 0.90231 0.77717 0.89717 0.89737 0.86861 0.91081 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 7.19 37.16 0.27 -1.12 16 2 C -0.09 -1.05 1.34 -153.69 -0.21 -1.25 16 3 C -0.13 -1.50 9.19 37.16 0.34 -1.16 16 4 C 0.08 0.87 4.48 -66.91 -0.30 0.57 16 5 H 0.10 1.06 7.97 -51.93 -0.41 0.65 16 6 N -0.84 -8.00 9.33 -3.98 -0.04 -8.04 16 7 C -0.20 -2.55 7.25 -25.92 -0.19 -2.74 16 8 C 0.15 2.27 3.45 -67.12 -0.23 2.04 16 9 H 0.10 1.60 6.16 -51.93 -0.32 1.28 16 10 N -0.75 -13.30 5.42 -51.43 -0.28 -13.58 16 11 C 0.22 5.06 6.64 -83.85 -0.56 4.51 16 12 C -0.30 -6.91 9.27 -39.09 -0.36 -7.28 16 13 C -0.08 -1.83 10.02 -39.69 -0.40 -2.22 16 14 C -0.20 -5.37 8.69 -38.83 -0.34 -5.70 16 15 C 0.14 3.90 5.57 -106.85 -0.60 3.30 16 16 C -0.47 -12.68 9.05 -37.75 -0.34 -13.02 16 17 H 0.07 1.97 7.91 -52.49 -0.41 1.55 16 18 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 19 N -0.79 -20.99 10.97 55.55 0.61 -20.38 16 20 Si 0.90 19.00 29.59 -169.99 -5.03 13.97 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.29 -7.29 9.63 -38.67 -0.37 -7.67 16 25 H 0.06 0.72 7.08 -51.93 -0.37 0.35 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.57 6.18 -51.93 -0.32 0.25 16 28 H 0.05 0.58 7.95 -51.93 -0.41 0.17 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.34 2.73 9.08 -39.29 -0.36 2.37 16 32 H 0.34 3.13 6.97 -39.29 -0.27 2.86 16 33 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.08 1.07 7.59 -51.93 -0.39 0.67 16 35 H 0.39 6.44 6.63 -40.82 -0.27 6.17 16 36 H 0.08 1.75 6.06 -52.49 -0.32 1.43 16 37 H 0.08 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.11 3.14 6.17 -52.49 -0.32 2.82 16 39 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 40 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -28.26 316.26 -9.20 -37.46 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -5.86 Total: 15.65 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -3.37 Total: -29.84 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.29 Total: -42.00 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.26 -9.20 -37.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405498772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.799 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds