Wall clock time and date at job start Mon Mar 30 2020 07:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 112.90785 * 2 1 4 4 C 1.53777 * 113.61586 * 228.73984 * 2 1 3 5 5 H 1.09001 * 113.69203 * 156.32676 * 4 2 1 6 6 N 1.46901 * 113.61260 * 25.43769 * 4 2 1 7 7 C 1.53772 * 87.08321 * 270.88878 * 4 2 1 8 8 C 1.53781 * 87.08500 * 334.56656 * 7 4 2 9 9 H 1.09001 * 113.61425 * 270.88597 * 8 7 4 10 10 N 1.46493 * 113.61579 * 140.06351 * 8 7 4 11 11 C 1.39687 * 119.99714 * 105.86713 * 10 8 7 12 12 C 1.39335 * 119.95531 * 359.72164 * 11 10 8 13 13 C 1.38477 * 120.42726 * 179.76123 * 12 11 10 14 14 C 1.37691 * 120.32403 * 0.51718 * 13 12 11 15 15 C 1.40757 * 119.89228 * 359.74379 * 14 13 12 16 16 C 1.41401 * 120.20486 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99829 * 155.25621 * 16 15 14 18 18 C 1.39930 * 120.00316 * 335.24963 * 16 15 14 19 19 N 1.30830 * 120.00040 * 342.21122 * 18 16 15 20 20 Si 1.86796 * 120.00254 * 162.21010 * 18 16 15 21 21 H 1.48502 * 109.47267 * 94.66151 * 20 18 16 22 22 H 1.48494 * 109.47310 * 214.65884 * 20 18 16 23 23 H 1.48502 * 109.47126 * 334.66505 * 20 18 16 24 24 C 1.38283 * 119.94797 * 180.02562 * 11 10 8 25 25 H 1.08993 * 109.47086 * 288.75459 * 1 2 3 26 26 H 1.09003 * 109.46867 * 48.75147 * 1 2 3 27 27 H 1.08994 * 109.46920 * 168.75265 * 1 2 3 28 28 H 1.08999 * 109.47024 * 191.25038 * 3 2 1 29 29 H 1.08999 * 109.46918 * 311.24399 * 3 2 1 30 30 H 1.08996 * 109.47120 * 71.24781 * 3 2 1 31 31 H 1.00899 * 111.00238 * 182.99183 * 6 4 2 32 32 H 1.00897 * 111.00233 * 306.94560 * 6 4 2 33 33 H 1.09009 * 113.61602 * 220.02176 * 7 4 2 34 34 H 1.09000 * 113.69643 * 89.13010 * 7 4 2 35 35 H 0.97002 * 120.00258 * 285.86659 * 10 8 7 36 36 H 1.08001 * 119.78148 * 0.02562 * 12 11 10 37 37 H 1.07994 * 119.83619 * 180.25988 * 13 12 11 38 38 H 1.07997 * 120.05303 * 179.76396 * 14 13 12 39 39 H 0.96998 * 120.00470 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.16743 * 359.94952 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1461 -0.9292 -1.0592 5 1 3.1591 -0.6511 -1.3499 6 7 1.2681 -1.1713 -2.2118 7 6 2.0929 -2.0425 0.0002 8 6 2.1460 -0.9290 1.0595 9 1 3.1590 -0.6498 1.3492 10 7 1.2717 -1.1712 2.2098 11 6 1.8204 -1.5578 3.4348 12 6 3.1988 -1.7185 3.5601 13 6 3.7536 -2.0968 4.7712 14 6 2.9473 -2.3286 5.8630 15 6 1.5526 -2.1756 5.7502 16 6 0.7183 -2.4125 6.8671 17 1 -0.2496 -1.9374 6.9285 18 6 1.1467 -3.2627 7.8926 19 7 2.1300 -4.0994 7.6808 20 14 0.3148 -3.2031 9.5640 21 1 -0.7499 -4.2366 9.6242 22 1 1.3189 -3.4645 10.6263 23 1 -0.2861 -1.8608 9.7702 24 6 0.9942 -1.7867 4.5198 25 1 -0.3633 0.3304 0.9730 26 1 -0.3633 0.6776 -0.7727 27 1 -0.3633 -1.0079 -0.2004 28 1 3.1954 1.3517 -0.2005 29 1 1.6429 2.0077 -0.7727 30 1 1.9627 1.8726 0.9731 31 1 1.6896 -1.8224 -2.8570 32 1 0.3602 -1.4947 -1.9132 33 1 2.9717 -2.6875 0.0004 34 1 1.1574 -2.6019 0.0012 35 1 0.3119 -1.0630 2.1208 36 1 3.8389 -1.5428 2.7082 37 1 4.8235 -2.2145 4.8587 38 1 3.3843 -2.6271 6.8044 39 1 2.4267 -4.6890 8.3916 40 1 -0.0747 -1.6664 4.4229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405498772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:41 Heat of formation + Delta-G solvation = 16.243895 kcal Electronic energy + Delta-G solvation = -19301.048000 eV Core-core repulsion = 16500.534901 eV Total energy + Delta-G solvation = -2800.513099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34507 -39.26757 -36.14126 -34.55243 -32.86669 -31.72522 -31.10484 -29.13202 -28.16897 -27.11320 -24.20773 -23.39040 -22.65045 -21.78657 -19.28887 -19.15620 -17.40249 -17.35437 -16.74560 -16.53873 -16.23902 -15.34019 -15.05067 -14.93205 -14.52656 -14.15003 -14.02144 -13.94289 -13.68888 -13.35288 -13.20301 -12.97811 -12.82142 -12.71295 -12.58779 -12.51621 -12.12444 -11.80759 -11.62884 -11.54574 -11.18000 -11.15092 -10.99482 -10.33195 -9.48133 -9.34059 -8.61309 -7.90568 -6.33000 1.04563 1.33962 1.38676 1.51921 1.59231 2.22414 2.78903 2.81620 3.46888 3.52837 3.78615 3.85396 3.93110 4.05291 4.32134 4.48613 4.50554 4.59211 4.68474 4.75810 4.83494 4.96154 4.98602 5.06194 5.11398 5.13041 5.16154 5.17891 5.26832 5.40950 5.42859 5.50821 5.62839 5.95861 6.02750 6.20048 6.25053 6.31895 6.62850 6.64980 6.90745 7.01957 7.05700 7.25827 8.37144 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038980 B = 0.004179 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.137886 B = 6698.898540 C = 6915.830594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.131 4.131 4 C 0.096 3.904 5 H 0.111 0.889 6 N -0.835 5.835 7 C -0.193 4.193 8 C 0.136 3.864 9 H 0.094 0.906 10 N -0.737 5.737 11 C 0.235 3.765 12 C -0.304 4.304 13 C -0.075 4.075 14 C -0.233 4.233 15 C 0.114 3.886 16 C -0.505 4.505 17 H 0.071 0.929 18 C 0.037 3.963 19 N -0.824 5.824 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.260 1.260 24 C -0.314 4.314 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.349 0.651 32 H 0.344 0.656 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.394 0.606 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.287 0.713 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 5.197 -14.295 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.017 4.017 5 H 0.129 0.871 6 N -0.365 5.365 7 C -0.235 4.235 8 C 0.029 3.971 9 H 0.111 0.889 10 N -0.367 5.367 11 C 0.134 3.866 12 C -0.327 4.327 13 C -0.094 4.094 14 C -0.254 4.254 15 C 0.111 3.889 16 C -0.534 4.534 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.450 5.450 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.189 1.189 23 H -0.183 1.183 24 C -0.338 4.338 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.230 0.770 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.402 5.809 -14.487 15.614 hybrid contribution -0.565 -1.317 1.387 1.994 sum -0.967 4.492 -13.101 13.883 Atomic orbital electron populations 1.21426 0.92790 1.02157 1.01729 1.22349 0.96591 0.95118 0.94158 1.21677 1.00840 0.94898 1.01410 1.22711 0.97255 0.93761 0.87949 0.87136 1.58679 1.06496 1.54781 1.16503 1.24346 1.01957 0.98341 0.98821 1.22352 0.94858 0.96014 0.83853 0.88864 1.44506 1.08118 1.76861 1.07262 1.17568 0.92220 0.91472 0.85385 1.20168 0.92843 1.21199 0.98469 1.20727 0.98126 0.97353 0.93198 1.21085 0.93797 1.12036 0.98479 1.17693 0.92627 0.86946 0.91643 1.19807 1.03543 1.26020 1.04048 0.91037 1.26755 0.94959 0.92349 1.03745 1.69920 1.24707 1.15297 1.35080 0.85221 0.78743 0.79755 0.76115 1.18677 1.18923 1.18338 1.20519 0.96970 1.22782 0.93562 0.93169 0.90707 0.92338 0.91911 0.91475 0.93661 0.83728 0.84120 0.91975 0.90576 0.76995 0.87044 0.87499 0.88686 0.90278 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 7.19 71.98 0.52 -1.97 16 2 C -0.08 -1.72 1.34 -51.65 -0.07 -1.79 16 3 C -0.13 -2.67 9.19 71.98 0.66 -2.00 16 4 C 0.10 1.81 4.48 45.44 0.20 2.01 16 5 H 0.11 1.93 7.97 -2.39 -0.02 1.91 16 6 N -0.83 -13.23 9.33 -166.51 -1.55 -14.78 16 7 C -0.19 -4.57 7.25 31.12 0.23 -4.34 16 8 C 0.14 3.76 3.45 45.52 0.16 3.91 16 9 H 0.09 2.76 6.16 -2.39 -0.01 2.74 16 10 N -0.74 -25.53 5.42 -316.63 -1.72 -27.25 16 11 C 0.23 10.59 6.64 38.16 0.25 10.84 16 12 C -0.30 -13.71 9.27 22.59 0.21 -13.50 16 13 C -0.08 -3.68 10.02 22.20 0.22 -3.45 16 14 C -0.23 -12.99 8.69 22.76 0.20 -12.79 16 15 C 0.11 6.49 5.57 -21.31 -0.12 6.38 16 16 C -0.50 -28.59 9.05 23.46 0.21 -28.38 16 17 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 18 C 0.04 1.93 5.14 85.25 0.44 2.37 16 19 N -0.82 -44.89 10.97 21.82 0.24 -44.65 16 20 Si 0.98 39.50 29.59 68.60 2.03 41.53 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 C -0.31 -16.23 9.63 22.86 0.22 -16.01 16 25 H 0.05 1.12 7.08 -2.39 -0.02 1.10 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.11 6.18 -2.39 -0.01 1.10 16 28 H 0.06 1.17 7.95 -2.39 -0.02 1.15 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.35 4.48 9.08 -89.69 -0.81 3.66 16 32 H 0.34 5.26 6.97 -89.70 -0.63 4.64 16 33 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 1.88 7.59 -2.39 -0.02 1.86 16 35 H 0.39 12.75 6.63 -92.71 -0.61 12.14 16 36 H 0.11 4.38 6.06 -2.91 -0.02 4.36 16 37 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.10 5.53 6.17 -2.91 -0.02 5.51 16 39 H 0.29 14.04 8.30 -92.71 -0.77 13.28 16 40 H 0.09 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -62.23 316.26 1.34 -60.89 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -0.99 Total: 43.00 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 3.33 Total: -58.74 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.03 Total: -86.68 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -62.23 1.34 -60.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405498772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.133 kcal (2) G-P(sol) polarization free energy of solvation -62.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds