Wall clock time and date at job start Mon Mar 30 2020 07:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 112.85390 * 2 1 4 4 C 1.53784 * 113.61054 * 228.69940 * 2 1 3 5 5 H 1.08993 * 113.61579 * 334.64964 * 4 2 1 6 6 N 1.46904 * 113.61720 * 105.47365 * 4 2 1 7 7 C 1.53786 * 87.07889 * 220.01725 * 4 2 1 8 8 C 1.53778 * 113.61670 * 131.20324 * 2 1 3 9 9 H 1.09007 * 113.61253 * 254.61261 * 8 2 1 10 10 N 1.46497 * 113.61340 * 25.42690 * 8 2 1 11 11 C 1.39685 * 120.00077 * 205.00185 * 10 8 2 12 12 C 1.39343 * 119.94888 * 0.02562 * 11 10 8 13 13 C 1.38478 * 120.42176 * 180.02562 * 12 11 10 14 14 C 1.37695 * 120.32789 * 0.02562 * 13 12 11 15 15 C 1.40749 * 119.89119 * 359.97438 * 14 13 12 16 16 C 1.41402 * 120.20903 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00455 * 205.09341 * 16 15 14 18 18 C 1.39926 * 120.00022 * 25.08833 * 16 15 14 19 19 N 1.30833 * 119.99940 * 17.31083 * 18 16 15 20 20 Si 1.86804 * 120.00158 * 197.30658 * 18 16 15 21 21 H 1.48499 * 109.46941 * 265.18331 * 20 18 16 22 22 H 1.48497 * 109.46995 * 25.18488 * 20 18 16 23 23 H 1.48506 * 109.46977 * 145.18414 * 20 18 16 24 24 C 1.38275 * 119.95666 * 180.30284 * 11 10 8 25 25 H 1.09001 * 109.46861 * 288.80218 * 1 2 3 26 26 H 1.09003 * 109.47131 * 48.79399 * 1 2 3 27 27 H 1.08997 * 109.47407 * 168.80109 * 1 2 3 28 28 H 1.08995 * 109.47427 * 191.19646 * 3 2 1 29 29 H 1.09000 * 109.46989 * 311.20529 * 3 2 1 30 30 H 1.08999 * 109.46804 * 71.19935 * 3 2 1 31 31 H 1.00896 * 111.00219 * 179.97438 * 6 4 2 32 32 H 1.00895 * 110.99371 * 303.95007 * 6 4 2 33 33 H 1.09007 * 113.61534 * 270.88182 * 7 4 2 34 34 H 1.09004 * 113.61289 * 139.98267 * 7 4 2 35 35 H 0.96993 * 120.00034 * 25.00642 * 10 8 2 36 36 H 1.07990 * 119.79080 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.83882 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.05774 * 179.97438 * 14 13 12 39 39 H 0.97003 * 120.00060 * 179.97438 * 19 18 16 40 40 H 1.08009 * 120.15977 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1459 -0.9300 -1.0586 5 1 1.4938 -1.7539 -1.3485 6 7 2.7106 -0.2165 -2.2118 7 6 3.1923 -1.3136 0.0011 8 6 2.1460 -0.9281 1.0601 9 1 2.5638 -0.3972 1.9156 10 7 1.2703 -2.0359 1.4504 11 6 1.4176 -2.6343 2.7039 12 6 2.3973 -2.1764 3.5826 13 6 2.5522 -2.7628 4.8275 14 6 1.7392 -3.8060 5.2106 15 6 0.7452 -4.2793 4.3337 16 6 -0.0937 -5.3498 4.7205 17 1 -0.5551 -5.9732 3.9688 18 6 -0.3261 -5.6017 6.0771 19 7 -0.0640 -4.6799 6.9679 20 14 -1.0107 -7.2539 6.6165 21 1 -2.4875 -7.1610 6.7411 22 1 -0.6629 -8.2869 5.6080 23 1 -0.4257 -7.6273 7.9295 24 6 0.5947 -3.6839 3.0689 25 1 -0.3633 0.3312 0.9728 26 1 -0.3633 0.6770 -0.7732 27 1 -0.3634 -1.0080 -0.1996 28 1 3.1942 1.3533 -0.1995 29 1 1.6415 2.0077 -0.7732 30 1 1.9601 1.8733 0.9728 31 1 3.1035 -0.8626 -2.8799 32 1 2.0181 0.3756 -2.6451 33 1 4.0711 -0.6687 0.0005 34 1 3.4443 -2.3741 0.0020 35 1 0.5884 -2.3538 0.8383 36 1 3.0400 -1.3590 3.2909 37 1 3.3144 -2.4001 5.5013 38 1 1.8641 -4.2604 6.1824 39 1 -0.2255 -4.8543 7.9083 40 1 -0.1624 -4.0423 2.3871 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405498776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:46 Heat of formation + Delta-G solvation = 18.405261 kcal Electronic energy + Delta-G solvation = -19309.130274 eV Core-core repulsion = 16508.710898 eV Total energy + Delta-G solvation = -2800.419376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32031 -39.23530 -36.09961 -34.51481 -32.88571 -31.71528 -31.19596 -29.07728 -27.98245 -27.12056 -24.45580 -23.31812 -22.57098 -21.96275 -19.29361 -18.77181 -17.48194 -17.03951 -16.70831 -16.55435 -16.30430 -15.70245 -15.27478 -14.74693 -14.67202 -14.27349 -14.14526 -13.95144 -13.61396 -13.17264 -13.10641 -12.95117 -12.80693 -12.71860 -12.66816 -12.24472 -12.15326 -11.94626 -11.59060 -11.27997 -11.13903 -11.02854 -10.93307 -10.36018 -9.58330 -9.33273 -8.60391 -7.92699 -6.32442 1.05096 1.34146 1.38994 1.52261 1.59432 2.22794 2.70590 2.80839 3.44047 3.59348 3.67962 3.84020 4.04618 4.07250 4.32724 4.49239 4.53356 4.57589 4.78826 4.81552 4.85870 5.00277 5.00492 5.07972 5.12995 5.15786 5.16752 5.18397 5.31841 5.41723 5.48513 5.50748 5.64372 5.96241 6.02911 6.20641 6.30255 6.32821 6.63773 6.65395 6.90231 7.02214 7.04828 7.25076 8.38098 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039332 B = 0.004191 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.726255 B = 6679.912914 C = 6885.484666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.110 4.110 4 C 0.080 3.920 5 H 0.053 0.947 6 N -0.832 5.832 7 C -0.143 4.143 8 C 0.134 3.866 9 H 0.080 0.920 10 N -0.729 5.729 11 C 0.237 3.763 12 C -0.303 4.303 13 C -0.075 4.075 14 C -0.232 4.232 15 C 0.114 3.886 16 C -0.504 4.504 17 H 0.072 0.928 18 C 0.036 3.964 19 N -0.824 5.824 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.260 1.260 23 H -0.265 1.265 24 C -0.312 4.312 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.346 0.654 32 H 0.348 0.652 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.393 0.607 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.287 0.713 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 8.134 -13.434 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 C -0.167 4.167 4 C -0.031 4.031 5 H 0.071 0.929 6 N -0.363 5.363 7 C -0.183 4.183 8 C 0.027 3.973 9 H 0.098 0.902 10 N -0.360 5.360 11 C 0.136 3.864 12 C -0.326 4.326 13 C -0.094 4.094 14 C -0.253 4.253 15 C 0.111 3.889 16 C -0.534 4.534 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.450 5.450 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.189 1.189 24 C -0.336 4.336 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.229 0.771 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.143 8.666 -12.658 15.659 hybrid contribution -1.341 -1.512 -0.150 2.027 sum 1.802 7.154 -12.808 14.781 Atomic orbital electron populations 1.21663 0.94141 1.01501 1.01829 1.22303 0.95256 0.95960 0.94442 1.21362 1.01490 0.92434 1.01453 1.22751 0.95232 0.94790 0.90370 0.92897 1.58790 1.39248 1.26170 1.12111 1.23522 0.98050 1.00741 0.95978 1.21800 0.91656 0.88010 0.95883 0.90219 1.44154 1.39588 1.37532 1.14710 1.17505 0.92844 0.90778 0.85286 1.20199 1.06869 1.08753 0.96760 1.20731 0.97615 0.95519 0.95532 1.21090 0.99996 1.02929 1.01242 1.17686 0.89888 0.90456 0.90886 1.19800 1.27170 1.13433 0.92969 0.91031 1.26751 0.93826 1.01183 0.96067 1.69922 1.37322 1.34277 1.03519 0.85221 0.78847 0.77374 0.78385 1.18688 1.18359 1.18946 1.20498 1.07576 1.04793 1.00712 0.93481 0.90922 0.93285 0.91434 0.91064 0.93162 0.84142 0.83822 0.88448 0.93095 0.77149 0.87029 0.87482 0.88656 0.90290 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.58 71.98 0.62 -2.30 16 2 C -0.08 -1.71 1.32 -51.66 -0.07 -1.78 16 3 C -0.11 -2.08 8.39 71.98 0.60 -1.48 16 4 C 0.08 1.66 4.26 45.44 0.19 1.85 16 5 H 0.05 1.16 7.96 -2.39 -0.02 1.14 16 6 N -0.83 -13.12 8.58 -166.48 -1.43 -14.55 16 7 C -0.14 -3.62 7.33 31.12 0.23 -3.39 16 8 C 0.13 3.84 3.58 45.52 0.16 4.01 16 9 H 0.08 2.50 6.08 -2.38 -0.01 2.48 16 10 N -0.73 -25.47 4.95 -316.63 -1.57 -27.04 16 11 C 0.24 10.71 6.64 38.16 0.25 10.96 16 12 C -0.30 -13.79 9.27 22.59 0.21 -13.58 16 13 C -0.08 -3.69 10.02 22.20 0.22 -3.47 16 14 C -0.23 -12.92 8.69 22.76 0.20 -12.73 16 15 C 0.11 6.48 5.57 -21.31 -0.12 6.36 16 16 C -0.50 -28.52 9.05 23.46 0.21 -28.31 16 17 H 0.07 3.91 7.90 -2.91 -0.02 3.89 16 18 C 0.04 1.92 5.14 85.25 0.44 2.35 16 19 N -0.82 -44.91 10.96 21.82 0.24 -44.67 16 20 Si 0.98 39.51 29.59 68.60 2.03 41.54 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 24 C -0.31 -16.06 9.63 22.86 0.22 -15.84 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.10 6.63 -2.39 -0.02 1.08 16 28 H 0.07 1.31 7.15 -2.39 -0.02 1.29 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.35 4.69 9.08 -89.70 -0.81 3.88 16 32 H 0.35 4.45 9.05 -89.70 -0.81 3.64 16 33 H 0.10 2.32 7.66 -2.38 -0.02 2.30 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.39 12.77 7.18 -92.71 -0.67 12.10 16 36 H 0.11 4.48 6.03 -2.92 -0.02 4.46 16 37 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 38 H 0.10 5.55 6.18 -2.91 -0.02 5.53 16 39 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 40 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -61.84 318.90 1.42 -60.42 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -1.23 Total: 41.64 kcal Atomic # 6 Polarization: -60.70 SS G_CDS: 3.37 Total: -57.33 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -2.76 Total: -86.26 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -61.84 1.42 -60.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405498776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.821 kcal (2) G-P(sol) polarization free energy of solvation -61.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds