Wall clock time and date at job start Mon Mar 30 2020 07:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 110.63128 * 2 1 4 4 C 1.55146 * 110.70585 * 236.71002 * 2 1 3 5 5 C 1.54908 * 101.65089 * 205.96635 * 4 2 1 6 6 N 1.47844 * 104.80092 * 37.06585 * 5 4 2 7 7 C 1.46896 * 111.00337 * 213.63630 * 6 5 4 8 8 H 1.09000 * 109.46999 * 60.83873 * 7 6 5 9 9 C 1.50697 * 109.47212 * 180.84031 * 7 6 5 10 10 H 1.07999 * 119.99935 * 35.11932 * 9 7 6 11 11 C 1.37878 * 119.99828 * 215.11292 * 9 7 6 12 12 N 1.31516 * 120.00233 * 5.15935 * 11 9 7 13 13 Si 1.86803 * 119.99771 * 185.15251 * 11 9 7 14 14 H 1.48501 * 109.47205 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46991 * 120.00555 * 13 11 9 16 16 H 1.48494 * 109.47183 * 240.00386 * 13 11 9 17 17 C 1.50699 * 109.47062 * 300.84474 * 7 6 5 18 18 C 1.38242 * 120.00209 * 133.85550 * 17 7 6 19 19 C 1.38228 * 120.00042 * 180.02562 * 18 17 7 20 20 C 1.38238 * 120.00328 * 359.96156 * 19 18 17 21 21 C 1.38239 * 119.99591 * 0.27298 * 20 19 18 22 22 C 1.38230 * 119.99983 * 359.53552 * 21 20 19 23 23 C 1.47449 * 108.56444 * 335.90650 * 6 5 4 24 24 H 1.09001 * 109.46644 * 296.89457 * 1 2 3 25 25 H 1.09003 * 109.47008 * 56.89141 * 1 2 3 26 26 H 1.08993 * 109.46948 * 176.89404 * 1 2 3 27 27 H 1.00897 * 110.99723 * 303.10818 * 3 2 1 28 28 H 1.00904 * 110.99606 * 67.05977 * 3 2 1 29 29 H 1.09005 * 110.98582 * 324.05163 * 4 2 1 30 30 H 1.08994 * 110.99614 * 87.83391 * 4 2 1 31 31 H 1.09004 * 110.37272 * 278.23411 * 5 4 2 32 32 H 1.09005 * 110.37261 * 155.89979 * 5 4 2 33 33 H 0.97003 * 119.99978 * 179.97438 * 12 11 9 34 34 H 1.08004 * 119.99517 * 359.97438 * 18 17 7 35 35 H 1.08000 * 119.99837 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.00228 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.99907 * 179.73262 * 21 20 19 38 38 H 1.08003 * 120.00357 * 180.21541 * 22 21 20 39 39 H 1.08999 * 109.88857 * 120.39672 * 23 6 5 40 40 H 1.08993 * 109.88653 * 241.41978 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0476 1.3748 0.0000 4 6 2.0785 -0.7966 -1.2131 5 6 3.4651 -1.2477 -0.6900 6 7 3.2490 -1.5490 0.7412 7 6 4.4406 -1.2192 1.5344 8 1 4.6550 -0.1545 1.4425 9 6 4.1906 -1.5582 2.9813 10 1 3.5902 -2.4184 3.2384 11 6 4.7284 -0.7704 3.9769 12 7 5.3736 0.3327 3.6661 13 14 4.5405 -1.2698 5.7671 14 1 3.7793 -2.5422 5.8488 15 1 5.8836 -1.4571 6.3723 16 1 3.8097 -0.2072 6.5033 17 6 5.6167 -2.0139 1.0282 18 6 6.8327 -1.3908 0.8174 19 6 7.9113 -2.1197 0.3526 20 6 7.7744 -3.4717 0.0992 21 6 6.5572 -4.0937 0.3053 22 6 5.4796 -3.3657 0.7739 23 6 2.0756 -0.7884 1.2091 24 1 -0.3633 0.4649 0.9165 25 1 -0.3633 0.5614 -0.8608 26 1 -0.3633 -1.0261 -0.0557 27 1 1.6935 1.8945 -0.7890 28 1 1.8314 1.8426 0.8675 29 1 1.4459 -1.6563 -1.4339 30 1 2.1807 -0.1545 -2.0879 31 1 4.1931 -0.4444 -0.8030 32 1 3.7984 -2.1403 -1.2196 33 1 5.7517 0.8871 4.3666 34 1 6.9396 -0.3345 1.0152 35 1 8.8611 -1.6328 0.1876 36 1 8.6170 -4.0410 -0.2644 37 1 6.4490 -5.1491 0.1032 38 1 4.5295 -3.8523 0.9383 39 1 1.3132 -1.4737 1.5796 40 1 2.3715 -0.1002 2.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405844484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:33 Heat of formation + Delta-G solvation = 27.941345 kcal Electronic energy + Delta-G solvation = -20210.099830 eV Core-core repulsion = 17410.093970 eV Total energy + Delta-G solvation = -2800.005860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.04797 -37.85238 -34.51096 -32.47181 -30.61383 -29.89748 -29.01252 -28.59144 -26.20579 -25.10061 -22.63077 -21.53875 -20.87856 -19.34551 -19.00802 -16.32938 -15.96806 -15.31054 -15.12511 -14.87268 -14.34437 -14.04139 -13.64068 -13.29023 -12.78988 -12.58767 -12.53125 -12.31640 -12.29664 -11.78459 -11.71204 -11.42786 -11.06795 -10.98713 -10.73093 -10.56711 -10.50009 -10.22352 -10.12698 -9.82243 -9.67287 -9.24140 -8.55106 -8.32006 -7.95166 -7.58212 -7.06635 -6.06601 -4.09931 2.38457 2.41743 3.27277 3.35958 3.40668 4.38095 4.76293 4.83666 4.98252 5.13934 5.27006 5.42464 5.45336 5.73094 5.76226 5.83733 5.87011 5.93255 5.97111 6.15797 6.27084 6.37852 6.40052 6.51923 6.52657 6.63198 6.70980 6.75815 6.87584 6.98906 7.06452 7.39688 7.43897 7.49799 7.61650 7.79398 7.82621 7.85807 7.91033 8.13937 8.28946 8.60106 9.04636 9.53825 10.98890 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.009835 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.738774 B = 2846.331959 C = 4285.068310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 N -0.829 5.829 4 C -0.113 4.113 5 C 0.053 3.947 6 N -0.521 5.521 7 C 0.228 3.772 8 H 0.050 0.950 9 C -0.495 4.495 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.883 5.883 13 Si 0.891 3.109 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.022 4.022 18 C -0.117 4.117 19 C -0.132 4.132 20 C -0.154 4.154 21 C -0.137 4.137 22 C -0.104 4.104 23 C 0.075 3.925 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.330 0.670 28 H 0.342 0.658 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.261 0.739 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.061 0.939 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 -0.960 -7.796 9.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.007 4.007 3 N -0.358 5.358 4 C -0.152 4.152 5 C -0.076 4.076 6 N -0.245 5.245 7 C 0.122 3.878 8 H 0.068 0.932 9 C -0.533 4.533 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.520 5.520 13 Si 0.719 3.281 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.023 4.023 18 C -0.136 4.136 19 C -0.150 4.150 20 C -0.172 4.172 21 C -0.155 4.155 22 C -0.122 4.122 23 C -0.054 4.054 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.155 0.845 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.079 0.921 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.751 -1.673 -7.692 8.720 hybrid contribution -0.721 0.927 1.125 1.626 sum -4.472 -0.746 -6.567 7.980 Atomic orbital electron populations 1.22475 0.97324 1.02200 1.00897 1.22190 0.91183 0.89644 0.97682 1.58794 1.66823 1.02720 1.07503 1.22696 0.97688 0.98449 0.96367 1.22819 0.95262 0.98490 0.90993 1.63728 1.05540 1.54556 1.00698 1.18705 0.83086 0.94722 0.91271 0.93247 1.20987 1.31625 1.11756 0.88975 0.91973 1.24985 0.95054 0.94464 0.99166 1.69937 1.36317 1.12825 1.32958 0.86542 0.77907 0.78679 0.84951 1.19569 1.20975 1.21104 1.20539 0.96338 0.94245 0.91162 1.21098 0.93038 1.00081 0.99335 1.20948 0.98147 0.94374 1.01506 1.20791 0.97146 0.94957 1.04330 1.20995 0.93762 0.98777 1.01946 1.20975 0.98080 0.94300 0.98839 1.22545 0.92983 0.94900 0.94954 0.92888 0.93396 0.92023 0.85829 0.84463 0.91361 0.92060 0.93910 0.92157 0.92880 0.86613 0.87734 0.87911 0.87753 0.86343 0.92106 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 8.76 37.16 0.33 -1.84 16 2 C 0.09 1.35 1.08 -129.77 -0.14 1.21 16 3 N -0.83 -12.69 8.99 2.21 0.02 -12.67 16 4 C -0.11 -1.76 6.22 -24.59 -0.15 -1.91 16 5 C 0.05 0.99 5.69 -2.30 -0.01 0.98 16 6 N -0.52 -11.00 4.52 -226.07 -1.02 -12.03 16 7 C 0.23 5.54 1.41 -70.02 -0.10 5.44 16 8 H 0.05 1.37 7.00 -51.93 -0.36 1.01 16 9 C -0.50 -13.12 7.19 -34.44 -0.25 -13.37 16 10 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 11 C 0.07 1.79 5.45 -17.82 -0.10 1.70 16 12 N -0.88 -24.56 12.77 55.43 0.71 -23.86 16 13 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 C -0.02 -0.50 4.00 -104.62 -0.42 -0.92 16 18 C -0.12 -2.62 9.67 -39.58 -0.38 -3.00 16 19 C -0.13 -2.56 10.05 -39.59 -0.40 -2.96 16 20 C -0.15 -2.81 10.05 -39.58 -0.40 -3.20 16 21 C -0.14 -2.57 10.05 -39.58 -0.40 -2.97 16 22 C -0.10 -2.20 9.04 -39.59 -0.36 -2.56 16 23 C 0.07 1.47 5.61 -2.83 -0.02 1.45 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.33 4.21 9.03 -39.29 -0.35 3.85 16 28 H 0.34 5.17 8.91 -39.29 -0.35 4.82 16 29 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.89 7.77 -51.93 -0.40 0.49 16 32 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.12 2.71 7.99 -52.48 -0.42 2.29 16 35 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.12 2.52 7.91 -52.48 -0.42 2.11 16 39 H 0.06 1.16 7.82 -51.93 -0.41 0.76 16 40 H 0.07 1.63 6.84 -51.93 -0.36 1.28 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -27.84 323.58 -9.64 -37.48 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -6.41 Total: 12.05 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -2.79 Total: -21.95 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.30 Total: -48.56 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.84 -9.64 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405844484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.420 kcal (2) G-P(sol) polarization free energy of solvation -27.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds