Wall clock time and date at job start Mon Mar 30 2020 07:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 110.63128 * 2 1 4 4 C 1.55146 * 110.70585 * 236.71002 * 2 1 3 5 5 C 1.54908 * 101.65089 * 205.96635 * 4 2 1 6 6 N 1.47844 * 104.80092 * 37.06585 * 5 4 2 7 7 C 1.46896 * 111.00337 * 213.63630 * 6 5 4 8 8 H 1.09000 * 109.46999 * 60.83873 * 7 6 5 9 9 C 1.50697 * 109.47212 * 180.84031 * 7 6 5 10 10 H 1.07999 * 119.99935 * 35.11932 * 9 7 6 11 11 C 1.37878 * 119.99828 * 215.11292 * 9 7 6 12 12 N 1.31516 * 120.00233 * 5.15935 * 11 9 7 13 13 Si 1.86803 * 119.99771 * 185.15251 * 11 9 7 14 14 H 1.48501 * 109.47205 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46991 * 120.00555 * 13 11 9 16 16 H 1.48494 * 109.47183 * 240.00386 * 13 11 9 17 17 C 1.50699 * 109.47062 * 300.84474 * 7 6 5 18 18 C 1.38242 * 120.00209 * 133.85550 * 17 7 6 19 19 C 1.38228 * 120.00042 * 180.02562 * 18 17 7 20 20 C 1.38238 * 120.00328 * 359.96156 * 19 18 17 21 21 C 1.38239 * 119.99591 * 0.27298 * 20 19 18 22 22 C 1.38230 * 119.99983 * 359.53552 * 21 20 19 23 23 C 1.47449 * 108.56444 * 335.90650 * 6 5 4 24 24 H 1.09001 * 109.46644 * 296.89457 * 1 2 3 25 25 H 1.09003 * 109.47008 * 56.89141 * 1 2 3 26 26 H 1.08993 * 109.46948 * 176.89404 * 1 2 3 27 27 H 1.00897 * 110.99723 * 303.10818 * 3 2 1 28 28 H 1.00904 * 110.99606 * 67.05977 * 3 2 1 29 29 H 1.09005 * 110.98582 * 324.05163 * 4 2 1 30 30 H 1.08994 * 110.99614 * 87.83391 * 4 2 1 31 31 H 1.09004 * 110.37272 * 278.23411 * 5 4 2 32 32 H 1.09005 * 110.37261 * 155.89979 * 5 4 2 33 33 H 0.97003 * 119.99978 * 179.97438 * 12 11 9 34 34 H 1.08004 * 119.99517 * 359.97438 * 18 17 7 35 35 H 1.08000 * 119.99837 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.00228 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.99907 * 179.73262 * 21 20 19 38 38 H 1.08003 * 120.00357 * 180.21541 * 22 21 20 39 39 H 1.08999 * 109.88857 * 120.39672 * 23 6 5 40 40 H 1.08993 * 109.88653 * 241.41978 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0476 1.3748 0.0000 4 6 2.0785 -0.7966 -1.2131 5 6 3.4651 -1.2477 -0.6900 6 7 3.2490 -1.5490 0.7412 7 6 4.4406 -1.2192 1.5344 8 1 4.6550 -0.1545 1.4425 9 6 4.1906 -1.5582 2.9813 10 1 3.5902 -2.4184 3.2384 11 6 4.7284 -0.7704 3.9769 12 7 5.3736 0.3327 3.6661 13 14 4.5405 -1.2698 5.7671 14 1 3.7793 -2.5422 5.8488 15 1 5.8836 -1.4571 6.3723 16 1 3.8097 -0.2072 6.5033 17 6 5.6167 -2.0139 1.0282 18 6 6.8327 -1.3908 0.8174 19 6 7.9113 -2.1197 0.3526 20 6 7.7744 -3.4717 0.0992 21 6 6.5572 -4.0937 0.3053 22 6 5.4796 -3.3657 0.7739 23 6 2.0756 -0.7884 1.2091 24 1 -0.3633 0.4649 0.9165 25 1 -0.3633 0.5614 -0.8608 26 1 -0.3633 -1.0261 -0.0557 27 1 1.6935 1.8945 -0.7890 28 1 1.8314 1.8426 0.8675 29 1 1.4459 -1.6563 -1.4339 30 1 2.1807 -0.1545 -2.0879 31 1 4.1931 -0.4444 -0.8030 32 1 3.7984 -2.1403 -1.2196 33 1 5.7517 0.8871 4.3666 34 1 6.9396 -0.3345 1.0152 35 1 8.8611 -1.6328 0.1876 36 1 8.6170 -4.0410 -0.2644 37 1 6.4490 -5.1491 0.1032 38 1 4.5295 -3.8523 0.9383 39 1 1.3132 -1.4737 1.5796 40 1 2.3715 -0.1002 2.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405844484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:33 Heat of formation + Delta-G solvation = 9.911135 kcal Electronic energy + Delta-G solvation = -20210.881679 eV Core-core repulsion = 17410.093970 eV Total energy + Delta-G solvation = -2800.787708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61365 -39.36872 -36.13273 -34.31719 -32.24741 -31.49737 -30.52680 -29.84213 -28.01992 -26.63830 -24.34947 -23.14346 -22.43624 -21.03840 -20.37891 -18.32486 -17.56100 -16.90827 -16.63953 -16.28878 -16.07668 -15.59565 -15.17384 -14.97104 -14.25451 -14.09172 -13.94243 -13.73051 -13.61543 -13.51654 -13.32879 -13.08304 -12.89751 -12.61702 -12.39498 -12.09346 -11.93330 -11.85371 -11.74363 -11.50656 -11.36297 -11.05970 -10.60876 -9.55986 -9.53907 -9.25182 -8.81574 -8.11271 -6.21802 0.76272 0.81902 1.36319 1.39044 1.50053 2.39612 3.06373 3.28710 3.54813 3.64747 3.69274 4.03670 4.18954 4.30107 4.33453 4.46093 4.56644 4.59770 4.64535 4.78973 4.90258 4.93453 4.97342 5.00240 5.09144 5.14956 5.21780 5.27294 5.33012 5.36533 5.45312 5.55382 5.71777 5.81754 5.84622 6.12034 6.17277 6.36354 6.41009 6.49152 6.67261 6.81079 6.99305 7.45259 8.92746 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.009835 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.738774 B = 2846.331959 C = 4285.068310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.094 3.906 3 N -0.844 5.844 4 C -0.103 4.103 5 C 0.055 3.945 6 N -0.524 5.524 7 C 0.243 3.757 8 H 0.002 0.998 9 C -0.501 4.501 10 H 0.050 0.950 11 C 0.021 3.979 12 N -0.913 5.913 13 Si 0.948 3.052 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.279 1.279 17 C -0.046 4.046 18 C -0.143 4.143 19 C -0.130 4.130 20 C -0.144 4.144 21 C -0.128 4.128 22 C -0.117 4.117 23 C 0.072 3.928 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.347 0.653 28 H 0.341 0.659 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.014 0.986 32 H 0.064 0.936 33 H 0.260 0.740 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 -2.738 -9.137 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.000 4.000 3 N -0.376 5.376 4 C -0.141 4.141 5 C -0.073 4.073 6 N -0.248 5.248 7 C 0.136 3.864 8 H 0.020 0.980 9 C -0.540 4.540 10 H 0.068 0.932 11 C -0.179 4.179 12 N -0.552 5.552 13 Si 0.774 3.226 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.205 1.205 17 C -0.047 4.047 18 C -0.162 4.162 19 C -0.148 4.148 20 C -0.162 4.162 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.056 4.056 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.161 0.839 28 H 0.154 0.846 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.997 -3.454 -9.050 10.479 hybrid contribution -0.598 1.446 1.467 2.145 sum -4.595 -2.008 -7.583 9.091 Atomic orbital electron populations 1.22363 0.94443 1.03093 1.02041 1.22069 0.93187 0.89197 0.95502 1.58721 1.67643 1.02967 1.08231 1.22688 0.95426 0.99342 0.96662 1.22786 0.96937 0.97731 0.89863 1.63670 1.04764 1.54706 1.01677 1.18324 0.84871 0.92195 0.90987 0.98002 1.21135 1.31189 1.11044 0.90601 0.93191 1.25655 0.95046 0.94501 1.02721 1.70074 1.37540 1.13803 1.33772 0.85652 0.77715 0.78505 0.80691 1.19120 1.20983 1.20455 1.20458 0.95952 0.95239 0.93069 1.21050 0.94352 0.99260 1.01580 1.21251 0.98099 0.95240 1.00205 1.21259 0.98174 0.94350 1.02369 1.21389 0.92936 1.00375 0.99918 1.20989 0.99067 0.93541 0.99902 1.22551 0.92624 0.94618 0.95830 0.92856 0.91031 0.91372 0.83907 0.84611 0.89454 0.90139 0.96707 0.91799 0.93075 0.89407 0.85106 0.83620 0.84079 0.86926 0.91817 0.94967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 8.76 71.98 0.63 -3.11 16 2 C 0.09 2.88 1.08 4.71 0.01 2.89 16 3 N -0.84 -26.04 8.99 -146.92 -1.32 -27.36 16 4 C -0.10 -3.03 6.22 31.98 0.20 -2.84 16 5 C 0.05 2.10 5.69 86.77 0.49 2.60 16 6 N -0.52 -22.98 4.52 -869.16 -3.93 -26.91 16 7 C 0.24 12.51 1.41 43.42 0.06 12.57 16 8 H 0.00 0.13 7.00 -2.39 -0.02 0.11 16 9 C -0.50 -27.83 7.19 25.60 0.18 -27.65 16 10 H 0.05 2.83 7.82 -2.91 -0.02 2.80 16 11 C 0.02 1.17 5.45 84.65 0.46 1.63 16 12 N -0.91 -53.54 12.77 21.45 0.27 -53.27 16 13 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 C -0.05 -2.20 4.00 -19.86 -0.08 -2.28 16 18 C -0.14 -6.66 9.67 22.27 0.22 -6.45 16 19 C -0.13 -4.88 10.05 22.27 0.22 -4.66 16 20 C -0.14 -4.72 10.05 22.27 0.22 -4.50 16 21 C -0.13 -4.45 10.05 22.27 0.22 -4.23 16 22 C -0.12 -4.92 9.04 22.27 0.20 -4.72 16 23 C 0.07 2.94 5.61 86.64 0.49 3.42 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 27 H 0.35 8.48 9.03 -89.70 -0.81 7.67 16 28 H 0.34 10.67 8.91 -89.69 -0.80 9.87 16 29 H 0.09 2.28 8.02 -2.38 -0.02 2.26 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.01 0.64 7.77 -2.38 -0.02 0.62 16 32 H 0.06 2.37 8.07 -2.38 -0.02 2.35 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.09 4.46 7.99 -2.91 -0.02 4.43 16 35 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 36 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 38 H 0.11 4.80 7.91 -2.91 -0.02 4.78 16 39 H 0.06 2.48 7.82 -2.39 -0.02 2.46 16 40 H 0.03 1.55 6.84 -2.39 -0.02 1.53 16 Total: -1.00 -63.98 323.58 -0.01 -63.99 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.58 Total: 34.30 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 3.53 Total: -37.33 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -4.98 Total: -107.54 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.98 -0.01 -63.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405844484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.901 kcal (2) G-P(sol) polarization free energy of solvation -63.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds