Wall clock time and date at job start Mon Mar 30 2020 07:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 110.87820 * 2 1 4 4 C 1.55142 * 110.99102 * 236.15345 * 2 1 3 5 5 C 1.54320 * 103.01846 * 206.25797 * 4 2 1 6 6 N 1.47446 * 107.23366 * 22.28269 * 5 4 2 7 7 C 1.46897 * 110.99683 * 123.25879 * 6 5 4 8 8 H 1.08996 * 109.47648 * 299.87231 * 7 6 5 9 9 C 1.50701 * 109.46979 * 179.87457 * 7 6 5 10 10 H 1.08003 * 120.00339 * 125.31937 * 9 7 6 11 11 C 1.37881 * 120.00044 * 305.31686 * 9 7 6 12 12 N 1.31518 * 119.99689 * 9.60778 * 11 9 7 13 13 Si 1.86794 * 120.00205 * 189.60373 * 11 9 7 14 14 H 1.48501 * 109.47046 * 90.00144 * 13 11 9 15 15 H 1.48502 * 109.47214 * 210.00076 * 13 11 9 16 16 H 1.48497 * 109.47345 * 330.00239 * 13 11 9 17 17 C 1.50701 * 109.47290 * 59.87828 * 7 6 5 18 18 C 1.38226 * 120.00044 * 32.73740 * 17 7 6 19 19 C 1.38245 * 119.99850 * 180.32702 * 18 17 7 20 20 C 1.38229 * 120.00025 * 359.93229 * 19 18 17 21 21 C 1.38235 * 119.99928 * 0.06760 * 20 19 18 22 22 C 1.38234 * 120.00081 * 359.95671 * 21 20 19 23 23 C 1.47842 * 108.56700 * 0.99261 * 6 5 4 24 24 H 1.09002 * 109.47301 * 182.38942 * 1 2 3 25 25 H 1.08999 * 109.47545 * 302.39447 * 1 2 3 26 26 H 1.09002 * 109.46858 * 62.39386 * 1 2 3 27 27 H 1.00907 * 110.99749 * 297.60991 * 3 2 1 28 28 H 1.00898 * 111.00091 * 61.55804 * 3 2 1 29 29 H 1.08999 * 110.71046 * 87.87344 * 4 2 1 30 30 H 1.09004 * 110.85197 * 324.70849 * 4 2 1 31 31 H 1.08995 * 109.88565 * 262.87486 * 5 4 2 32 32 H 1.09003 * 109.88793 * 141.69110 * 5 4 2 33 33 H 0.97000 * 119.99543 * 180.02562 * 12 11 9 34 34 H 1.07997 * 120.00083 * 0.28507 * 18 17 7 35 35 H 1.08002 * 119.99706 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.00146 * 180.02562 * 20 19 18 37 37 H 1.08007 * 119.99856 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.99856 * 180.02562 * 22 21 20 39 39 H 1.08995 * 110.37480 * 94.72986 * 23 6 5 40 40 H 1.08997 * 110.37197 * 217.07592 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0535 1.3725 0.0000 4 6 2.0857 -0.8067 -1.2030 5 6 3.4692 -1.2709 -0.7009 6 7 3.4312 -1.2423 0.7728 7 6 3.7610 -2.5594 1.3335 8 1 3.0385 -3.2956 0.9814 9 6 3.7152 -2.4905 2.8382 10 1 3.0946 -3.1797 3.3917 11 6 4.4656 -1.5477 3.5084 12 7 5.0708 -0.5915 2.8383 13 14 4.6226 -1.6285 5.3680 14 1 5.7987 -2.4598 5.7298 15 1 4.8001 -0.2573 5.9098 16 1 3.3938 -2.2327 5.9427 17 6 5.1443 -2.9617 0.8910 18 6 6.1164 -1.9978 0.6999 19 6 7.3835 -2.3662 0.2874 20 6 7.6786 -3.6986 0.0676 21 6 6.7064 -4.6625 0.2588 22 6 5.4393 -4.2941 0.6707 23 6 2.0848 -0.8064 1.2006 24 1 -0.3634 -1.0268 0.0428 25 1 -0.3634 0.5505 0.8677 26 1 -0.3633 0.4762 -0.9107 27 1 1.7744 1.8659 -0.8348 28 1 1.7632 1.8702 0.8283 29 1 2.1885 -0.1686 -2.0806 30 1 1.4485 -1.6632 -1.4234 31 1 4.2420 -0.5942 -1.0652 32 1 3.6682 -2.2852 -1.0471 33 1 5.5990 0.0716 3.3097 34 1 5.8860 -0.9568 0.8720 35 1 8.1429 -1.6130 0.1377 36 1 8.6686 -3.9865 -0.2542 37 1 6.9369 -5.7036 0.0866 38 1 4.6799 -5.0473 0.8205 39 1 1.4522 -1.6709 1.4019 40 1 2.1544 -0.1720 2.0842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405844485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:35 Heat of formation + Delta-G solvation = 43.412270 kcal Electronic energy + Delta-G solvation = -20505.174664 eV Core-core repulsion = 17705.839674 eV Total energy + Delta-G solvation = -2799.334990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.92591 -37.67415 -34.50825 -32.21044 -30.42147 -29.65064 -28.79294 -28.49173 -26.27191 -25.00588 -22.52112 -21.29809 -20.70403 -19.34457 -18.80658 -16.35167 -15.65299 -15.21487 -15.02881 -14.61122 -14.39227 -13.91928 -13.41404 -13.12359 -12.69480 -12.59514 -12.36451 -12.33624 -12.13817 -11.59763 -11.49398 -11.44199 -10.99045 -10.81181 -10.67870 -10.45563 -10.37979 -10.19491 -9.96557 -9.70426 -9.56981 -9.09027 -8.38960 -8.11462 -7.76950 -7.36513 -6.60911 -5.81128 -4.01624 2.52100 2.63329 3.33809 3.40761 3.43421 4.47207 4.90690 5.00469 5.05932 5.22117 5.38443 5.46926 5.67888 5.78129 5.84513 5.90354 5.98556 6.00733 6.10593 6.21487 6.33602 6.43487 6.51493 6.58314 6.64631 6.67773 6.81714 6.94934 6.99306 7.13708 7.25934 7.33387 7.53291 7.72004 7.75676 7.86984 7.94086 8.04945 8.18976 8.34970 8.59960 8.71200 9.10707 9.64686 11.10770 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.009788 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.618529 B = 2859.817190 C = 4020.913952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.814 5.814 4 C -0.128 4.128 5 C 0.050 3.950 6 N -0.464 5.464 7 C 0.242 3.758 8 H -0.006 1.006 9 C -0.534 4.534 10 H 0.055 0.945 11 C 0.090 3.910 12 N -0.815 5.815 13 Si 0.875 3.125 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.028 4.028 18 C -0.068 4.068 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.143 4.143 22 C -0.138 4.138 23 C 0.095 3.905 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.326 0.674 28 H 0.338 0.662 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.255 0.745 34 H 0.163 0.837 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.029 0.971 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 0.836 -6.547 7.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 N -0.343 5.343 4 C -0.167 4.167 5 C -0.078 4.078 6 N -0.187 5.187 7 C 0.135 3.865 8 H 0.011 0.989 9 C -0.572 4.572 10 H 0.073 0.927 11 C -0.119 4.119 12 N -0.447 5.447 13 Si 0.703 3.297 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.029 4.029 18 C -0.086 4.086 19 C -0.166 4.166 20 C -0.172 4.172 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.033 4.033 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.181 0.819 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.047 0.953 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.838 1.017 -6.328 7.009 hybrid contribution -1.331 -0.492 0.885 1.672 sum -4.169 0.525 -5.443 6.876 Atomic orbital electron populations 1.22478 0.97772 1.02081 1.00782 1.22055 0.90179 0.90008 0.97411 1.58604 1.67177 1.02225 1.06267 1.22810 0.98394 0.98421 0.97048 1.22732 0.94912 0.98309 0.91887 1.63714 1.24371 1.28448 1.02187 1.18447 0.87946 0.85399 0.94681 0.98867 1.20774 1.28814 1.18137 0.89428 0.92724 1.24869 0.95250 0.94746 0.97007 1.70082 1.28984 1.11687 1.33963 0.86895 0.78461 0.77185 0.87189 1.20792 1.21297 1.20191 1.20310 0.98522 0.91824 0.92288 1.21824 0.90676 1.03052 0.93035 1.21190 0.97763 0.95164 1.02500 1.20788 0.98107 0.93826 1.04433 1.20748 0.94117 0.97843 1.03417 1.20896 0.96265 0.96318 1.02191 1.22531 0.89425 0.95991 0.95358 0.92351 0.92882 0.93407 0.86217 0.84903 0.92166 0.92417 0.91960 0.94963 0.93472 0.81937 0.88063 0.88353 0.88172 0.87985 0.95296 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 8.96 37.16 0.33 -1.97 16 2 C 0.10 1.58 1.11 -129.46 -0.14 1.44 16 3 N -0.81 -12.63 9.03 2.46 0.02 -12.61 16 4 C -0.13 -2.10 6.10 -24.91 -0.15 -2.26 16 5 C 0.05 1.00 5.70 -2.83 -0.02 0.98 16 6 N -0.46 -10.34 2.93 -226.08 -0.66 -11.00 16 7 C 0.24 5.85 1.54 -70.02 -0.11 5.74 16 8 H -0.01 -0.15 8.02 -51.93 -0.42 -0.57 16 9 C -0.53 -14.05 7.88 -34.44 -0.27 -14.32 16 10 H 0.05 1.46 7.83 -52.48 -0.41 1.05 16 11 C 0.09 2.36 5.19 -17.82 -0.09 2.27 16 12 N -0.82 -21.48 9.21 55.43 0.51 -20.97 16 13 Si 0.87 20.76 29.55 -169.99 -5.02 15.74 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.03 -0.67 3.71 -104.63 -0.39 -1.05 16 18 C -0.07 -1.58 7.46 -39.58 -0.30 -1.88 16 19 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 20 C -0.15 -2.98 10.05 -39.59 -0.40 -3.38 16 21 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 22 C -0.14 -2.99 9.69 -39.58 -0.38 -3.38 16 23 C 0.10 1.96 5.01 -2.30 -0.01 1.95 16 24 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.33 4.26 9.07 -39.29 -0.36 3.90 16 28 H 0.34 5.00 9.06 -39.29 -0.36 4.64 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.03 0.66 7.04 -51.93 -0.37 0.29 16 33 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.16 4.14 5.66 -52.49 -0.30 3.85 16 35 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 38 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.03 0.61 7.63 -51.93 -0.40 0.21 16 40 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -27.07 316.25 -9.49 -36.55 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.38 Total: 10.09 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -2.72 Total: -22.57 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.13 Total: -44.58 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.07 -9.49 -36.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405844485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.963 kcal (2) G-P(sol) polarization free energy of solvation -27.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds