Wall clock time and date at job start Mon Mar 30 2020 07:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 110.87820 * 2 1 4 4 C 1.55142 * 110.99102 * 236.15345 * 2 1 3 5 5 C 1.54320 * 103.01846 * 206.25797 * 4 2 1 6 6 N 1.47446 * 107.23366 * 22.28269 * 5 4 2 7 7 C 1.46897 * 110.99683 * 123.25879 * 6 5 4 8 8 H 1.08996 * 109.47648 * 299.87231 * 7 6 5 9 9 C 1.50701 * 109.46979 * 179.87457 * 7 6 5 10 10 H 1.08003 * 120.00339 * 125.31937 * 9 7 6 11 11 C 1.37881 * 120.00044 * 305.31686 * 9 7 6 12 12 N 1.31518 * 119.99689 * 9.60778 * 11 9 7 13 13 Si 1.86794 * 120.00205 * 189.60373 * 11 9 7 14 14 H 1.48501 * 109.47046 * 90.00144 * 13 11 9 15 15 H 1.48502 * 109.47214 * 210.00076 * 13 11 9 16 16 H 1.48497 * 109.47345 * 330.00239 * 13 11 9 17 17 C 1.50701 * 109.47290 * 59.87828 * 7 6 5 18 18 C 1.38226 * 120.00044 * 32.73740 * 17 7 6 19 19 C 1.38245 * 119.99850 * 180.32702 * 18 17 7 20 20 C 1.38229 * 120.00025 * 359.93229 * 19 18 17 21 21 C 1.38235 * 119.99928 * 0.06760 * 20 19 18 22 22 C 1.38234 * 120.00081 * 359.95671 * 21 20 19 23 23 C 1.47842 * 108.56700 * 0.99261 * 6 5 4 24 24 H 1.09002 * 109.47301 * 182.38942 * 1 2 3 25 25 H 1.08999 * 109.47545 * 302.39447 * 1 2 3 26 26 H 1.09002 * 109.46858 * 62.39386 * 1 2 3 27 27 H 1.00907 * 110.99749 * 297.60991 * 3 2 1 28 28 H 1.00898 * 111.00091 * 61.55804 * 3 2 1 29 29 H 1.08999 * 110.71046 * 87.87344 * 4 2 1 30 30 H 1.09004 * 110.85197 * 324.70849 * 4 2 1 31 31 H 1.08995 * 109.88565 * 262.87486 * 5 4 2 32 32 H 1.09003 * 109.88793 * 141.69110 * 5 4 2 33 33 H 0.97000 * 119.99543 * 180.02562 * 12 11 9 34 34 H 1.07997 * 120.00083 * 0.28507 * 18 17 7 35 35 H 1.08002 * 119.99706 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.00146 * 180.02562 * 20 19 18 37 37 H 1.08007 * 119.99856 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.99856 * 180.02562 * 22 21 20 39 39 H 1.08995 * 110.37480 * 94.72986 * 23 6 5 40 40 H 1.08997 * 110.37197 * 217.07592 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0535 1.3725 0.0000 4 6 2.0857 -0.8067 -1.2030 5 6 3.4692 -1.2709 -0.7009 6 7 3.4312 -1.2423 0.7728 7 6 3.7610 -2.5594 1.3335 8 1 3.0385 -3.2956 0.9814 9 6 3.7152 -2.4905 2.8382 10 1 3.0946 -3.1797 3.3917 11 6 4.4656 -1.5477 3.5084 12 7 5.0708 -0.5915 2.8383 13 14 4.6226 -1.6285 5.3680 14 1 5.7987 -2.4598 5.7298 15 1 4.8001 -0.2573 5.9098 16 1 3.3938 -2.2327 5.9427 17 6 5.1443 -2.9617 0.8910 18 6 6.1164 -1.9978 0.6999 19 6 7.3835 -2.3662 0.2874 20 6 7.6786 -3.6986 0.0676 21 6 6.7064 -4.6625 0.2588 22 6 5.4393 -4.2941 0.6707 23 6 2.0848 -0.8064 1.2006 24 1 -0.3634 -1.0268 0.0428 25 1 -0.3634 0.5505 0.8677 26 1 -0.3633 0.4762 -0.9107 27 1 1.7744 1.8659 -0.8348 28 1 1.7632 1.8702 0.8283 29 1 2.1885 -0.1686 -2.0806 30 1 1.4485 -1.6632 -1.4234 31 1 4.2420 -0.5942 -1.0652 32 1 3.6682 -2.2852 -1.0471 33 1 5.5990 0.0716 3.3097 34 1 5.8860 -0.9568 0.8720 35 1 8.1429 -1.6130 0.1377 36 1 8.6686 -3.9865 -0.2542 37 1 6.9369 -5.7036 0.0866 38 1 4.6799 -5.0473 0.8205 39 1 1.4522 -1.6709 1.4019 40 1 2.1544 -0.1720 2.0842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405844485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:35 Heat of formation + Delta-G solvation = 27.679648 kcal Electronic energy + Delta-G solvation = -20505.856882 eV Core-core repulsion = 17705.839674 eV Total energy + Delta-G solvation = -2800.017208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53944 -39.23081 -36.13732 -34.01174 -32.09653 -31.29807 -30.35947 -29.76840 -28.07404 -26.55234 -24.28691 -22.94579 -22.32007 -21.06962 -20.20025 -18.26290 -17.28448 -16.89324 -16.37863 -16.22122 -16.07618 -15.61790 -15.06413 -14.66006 -14.38087 -13.94333 -13.84562 -13.71773 -13.57003 -13.34411 -13.15311 -13.09953 -12.83411 -12.54052 -12.42884 -11.98462 -11.94770 -11.84579 -11.65103 -11.38053 -11.20473 -10.90915 -10.39768 -9.43548 -9.34081 -9.08027 -8.36561 -7.79207 -6.06891 0.84645 0.98624 1.40982 1.45142 1.50191 2.49141 3.23098 3.38564 3.64318 3.71467 3.81870 4.04656 4.26089 4.37581 4.38525 4.52059 4.54892 4.61146 4.70910 4.81523 4.89269 4.99874 5.01615 5.05667 5.08901 5.12108 5.22505 5.26005 5.39091 5.48085 5.56514 5.66461 5.78372 5.88642 6.03742 6.24019 6.39526 6.50844 6.58675 6.68361 6.83920 6.97531 7.22666 7.60700 9.07979 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.009788 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.618529 B = 2859.817190 C = 4020.913952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.827 5.827 4 C -0.119 4.119 5 C 0.054 3.946 6 N -0.476 5.476 7 C 0.244 3.756 8 H -0.023 1.023 9 C -0.553 4.553 10 H 0.038 0.962 11 C 0.060 3.940 12 N -0.824 5.824 13 Si 0.923 3.077 14 H -0.286 1.286 15 H -0.283 1.283 16 H -0.277 1.277 17 C -0.050 4.050 18 C -0.085 4.085 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.137 4.137 22 C -0.155 4.155 23 C 0.095 3.905 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.344 0.656 28 H 0.341 0.659 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.022 0.978 33 H 0.252 0.748 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.015 0.985 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 0.643 -7.737 8.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 N -0.358 5.358 4 C -0.158 4.158 5 C -0.075 4.075 6 N -0.199 5.199 7 C 0.137 3.863 8 H -0.006 1.006 9 C -0.591 4.591 10 H 0.056 0.944 11 C -0.148 4.148 12 N -0.456 5.456 13 Si 0.751 3.249 14 H -0.213 1.213 15 H -0.208 1.208 16 H -0.202 1.202 17 C -0.051 4.051 18 C -0.104 4.104 19 C -0.173 4.173 20 C -0.165 4.165 21 C -0.155 4.155 22 C -0.173 4.173 23 C -0.034 4.034 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.155 0.845 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.125 0.875 39 H 0.033 0.967 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.449 0.834 -7.530 7.962 hybrid contribution -1.397 -0.468 1.221 1.913 sum -3.846 0.366 -6.309 7.398 Atomic orbital electron populations 1.22372 0.95085 1.02446 1.02333 1.21877 0.92024 0.89836 0.94814 1.58506 1.67782 1.02072 1.07406 1.22768 0.96157 0.99175 0.97709 1.22621 0.96825 0.97511 0.90512 1.63498 1.25392 1.27316 1.03712 1.18335 0.88430 0.85842 0.93655 1.00564 1.20887 1.29125 1.18134 0.90907 0.94389 1.25292 0.95184 0.94591 0.99729 1.70217 1.29084 1.11736 1.34582 0.86139 0.77917 0.77041 0.83840 1.21258 1.20823 1.20238 1.20312 0.98062 0.92905 0.93821 1.21598 0.92080 1.01780 0.94906 1.21441 0.97100 0.96797 1.01921 1.21201 0.99702 0.92838 1.02721 1.21148 0.92969 0.99844 1.01577 1.21116 0.97767 0.95691 1.02742 1.22455 0.88939 0.95653 0.96329 0.92515 0.92412 0.90850 0.84220 0.84511 0.89931 0.91310 0.93296 0.95972 0.93861 0.84544 0.86179 0.84539 0.84620 0.87475 0.96654 0.94009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 8.96 71.98 0.64 -3.41 16 2 C 0.11 3.43 1.11 4.92 0.01 3.44 16 3 N -0.83 -24.76 9.03 -146.14 -1.32 -26.08 16 4 C -0.12 -3.77 6.10 31.78 0.19 -3.58 16 5 C 0.05 2.16 5.70 86.65 0.49 2.66 16 6 N -0.48 -21.95 2.93 -869.17 -2.54 -24.50 16 7 C 0.24 12.31 1.54 43.42 0.07 12.37 16 8 H -0.02 -1.19 8.02 -2.39 -0.02 -1.21 16 9 C -0.55 -30.25 7.88 25.60 0.20 -30.05 16 10 H 0.04 2.13 7.83 -2.91 -0.02 2.11 16 11 C 0.06 3.20 5.19 84.65 0.44 3.64 16 12 N -0.82 -44.63 9.21 21.45 0.20 -44.43 16 13 Si 0.92 43.49 29.55 68.60 2.03 45.52 16 14 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 C -0.05 -2.40 3.71 -19.87 -0.07 -2.47 16 18 C -0.09 -4.04 7.46 22.27 0.17 -3.87 16 19 C -0.15 -6.27 10.05 22.27 0.22 -6.05 16 20 C -0.15 -5.26 10.05 22.27 0.22 -5.03 16 21 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 22 C -0.15 -6.65 9.69 22.27 0.22 -6.43 16 23 C 0.09 4.03 5.01 86.77 0.43 4.46 16 24 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.34 8.21 9.07 -89.69 -0.81 7.39 16 28 H 0.34 9.88 9.06 -89.70 -0.81 9.06 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.03 8.04 -2.38 -0.02 2.01 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.02 0.92 7.04 -2.39 -0.02 0.90 16 33 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 34 H 0.14 7.19 5.66 -2.91 -0.02 7.17 16 35 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 39 H 0.02 0.68 7.63 -2.39 -0.02 0.66 16 40 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -59.71 316.25 1.22 -58.48 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.60 Total: 30.14 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 3.46 Total: -39.14 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -3.67 Total: -95.01 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -59.71 1.22 -58.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405844485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.164 kcal (2) G-P(sol) polarization free energy of solvation -59.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds