Wall clock time and date at job start Mon Mar 30 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 110.64079 * 2 1 4 4 C 1.54596 * 110.72609 * 123.15026 * 2 1 3 5 5 C 1.53991 * 105.13923 * 140.31562 * 4 2 1 6 6 N 1.47900 * 107.05921 * 1.22891 * 5 4 2 7 7 C 1.46901 * 110.99892 * 214.15781 * 6 5 4 8 8 H 1.09000 * 109.47399 * 53.74209 * 7 6 5 9 9 C 1.50697 * 109.47006 * 173.74741 * 7 6 5 10 10 H 1.07999 * 120.00674 * 54.91896 * 9 7 6 11 11 C 1.37879 * 119.99838 * 234.91468 * 9 7 6 12 12 N 1.31510 * 120.00179 * 187.05761 * 11 9 7 13 13 Si 1.86799 * 119.99966 * 7.05538 * 11 9 7 14 14 H 1.48497 * 109.47376 * 274.24874 * 13 11 9 15 15 H 1.48504 * 109.47149 * 34.24517 * 13 11 9 16 16 H 1.48502 * 109.47085 * 154.24755 * 13 11 9 17 17 C 1.50701 * 109.46658 * 293.74515 * 7 6 5 18 18 C 1.38239 * 120.00126 * 313.38725 * 17 7 6 19 19 C 1.38232 * 119.99927 * 179.78972 * 18 17 7 20 20 C 1.38237 * 120.00101 * 0.46874 * 19 18 17 21 21 C 1.38237 * 119.99823 * 359.75878 * 20 19 18 22 22 C 1.38228 * 119.99907 * 0.03321 * 21 20 19 23 23 C 1.48532 * 105.81953 * 334.66522 * 6 5 4 24 24 H 1.08998 * 109.47259 * 298.30155 * 1 2 3 25 25 H 1.08995 * 109.47453 * 58.30146 * 1 2 3 26 26 H 1.09004 * 109.47286 * 178.30521 * 1 2 3 27 27 H 1.00899 * 111.00341 * 61.70276 * 3 2 1 28 28 H 1.00903 * 110.99798 * 185.65553 * 3 2 1 29 29 H 1.08994 * 110.30759 * 21.40046 * 4 2 1 30 30 H 1.09007 * 110.39300 * 259.27903 * 4 2 1 31 31 H 1.08992 * 109.91823 * 241.87047 * 5 4 2 32 32 H 1.09006 * 109.91208 * 120.57938 * 5 4 2 33 33 H 0.97001 * 120.00385 * 180.02562 * 12 11 9 34 34 H 1.08001 * 120.00053 * 359.97438 * 18 17 7 35 35 H 1.08001 * 120.00258 * 180.25145 * 19 18 17 36 36 H 1.08002 * 119.99899 * 179.79302 * 20 19 18 37 37 H 1.07997 * 119.99519 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.99688 * 179.97438 * 22 21 20 39 39 H 1.09003 * 110.67071 * 157.64334 * 23 6 5 40 40 H 1.09001 * 110.66775 * 280.77741 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0478 1.3747 0.0000 4 6 2.0771 -0.7907 1.2106 5 6 3.2893 -1.5697 0.6675 6 7 3.4318 -1.2104 -0.7601 7 6 3.9212 -2.3523 -1.5440 8 1 3.2762 -3.2140 -1.3724 9 6 3.9078 -1.9986 -3.0089 10 1 4.4264 -1.1174 -3.3565 11 6 3.2334 -2.8002 -3.9054 12 7 3.3353 -2.5727 -5.1967 13 14 2.1751 -4.2093 -3.2860 14 1 3.0208 -5.4137 -3.0879 15 1 1.5480 -3.8271 -1.9952 16 1 1.1150 -4.5072 -4.2823 17 6 5.3285 -2.6860 -1.1207 18 6 6.2654 -1.6792 -0.9811 19 6 7.5551 -1.9848 -0.5885 20 6 7.9105 -3.2983 -0.3449 21 6 6.9748 -4.3056 -0.4890 22 6 5.6840 -3.9995 -0.8774 23 6 2.0783 -0.7966 -1.2105 24 1 -0.3634 0.4872 0.9048 25 1 -0.3634 0.5400 -0.8743 26 1 -0.3634 -1.0272 -0.0304 27 1 1.7574 1.8705 0.8294 28 1 3.0525 1.3826 -0.0928 29 1 1.3208 -1.4806 1.5848 30 1 2.3893 -0.1076 2.0007 31 1 3.1162 -2.6413 0.7652 32 1 4.1887 -1.2848 1.2136 33 1 2.8606 -3.1363 -5.8275 34 1 5.9890 -0.6535 -1.1759 35 1 8.2860 -1.1978 -0.4756 36 1 8.9191 -3.5374 -0.0414 37 1 7.2524 -5.3317 -0.2982 38 1 4.9531 -4.7866 -0.9903 39 1 2.1444 -0.1593 -2.0924 40 1 1.4561 -1.6688 -1.4107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405844486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:37 Heat of formation + Delta-G solvation = 29.610119 kcal Electronic energy + Delta-G solvation = -20242.833446 eV Core-core repulsion = 17442.899950 eV Total energy + Delta-G solvation = -2799.933496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.29391 -38.11366 -34.70769 -32.44737 -30.94544 -30.17846 -29.16560 -28.88132 -26.68588 -25.18317 -22.55903 -21.88998 -21.03554 -19.40293 -18.97732 -17.11721 -16.17667 -15.50905 -15.32767 -14.88253 -14.47981 -14.27659 -13.76028 -13.43133 -13.06286 -12.80142 -12.73167 -12.65468 -12.33424 -12.01939 -11.77409 -11.68439 -11.24295 -11.18239 -10.99991 -10.79193 -10.55804 -10.37346 -10.21173 -10.00016 -9.87244 -9.44789 -8.70475 -8.33016 -8.21980 -7.85344 -7.43970 -6.21606 -4.19924 2.09818 2.15566 3.15884 3.22081 3.25517 4.26401 4.48729 4.75396 4.90086 5.00520 5.11531 5.21601 5.38036 5.52348 5.57474 5.63448 5.71014 5.81305 5.88268 5.99650 6.06023 6.18938 6.21841 6.25521 6.27903 6.35782 6.40227 6.46265 6.60588 6.72083 6.80448 6.93362 7.13178 7.17947 7.33721 7.48831 7.57369 7.76377 7.85433 7.91280 7.96326 8.49699 8.90575 9.40164 10.90746 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.009885 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.038685 B = 2831.860888 C = 4026.273305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.108 3.892 3 N -0.828 5.828 4 C -0.159 4.159 5 C 0.031 3.969 6 N -0.506 5.506 7 C 0.204 3.796 8 H 0.017 0.983 9 C -0.492 4.492 10 H 0.084 0.916 11 C 0.079 3.921 12 N -0.884 5.884 13 Si 0.866 3.134 14 H -0.274 1.274 15 H -0.268 1.268 16 H -0.285 1.285 17 C -0.028 4.028 18 C -0.092 4.092 19 C -0.129 4.129 20 C -0.148 4.148 21 C -0.125 4.125 22 C -0.135 4.135 23 C 0.069 3.931 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.329 0.671 28 H 0.352 0.648 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.266 0.734 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 1.414 12.213 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 N -0.358 5.358 4 C -0.200 4.200 5 C -0.098 4.098 6 N -0.230 5.230 7 C 0.098 3.902 8 H 0.035 0.965 9 C -0.530 4.530 10 H 0.102 0.898 11 C -0.125 4.125 12 N -0.521 5.521 13 Si 0.693 3.307 14 H -0.200 1.200 15 H -0.193 1.193 16 H -0.211 1.211 17 C -0.029 4.029 18 C -0.110 4.110 19 C -0.147 4.147 20 C -0.166 4.166 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.059 4.059 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.166 0.834 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.312 1.859 11.252 11.409 hybrid contribution -0.545 -2.031 1.153 2.398 sum -0.857 -0.172 12.405 12.436 Atomic orbital electron populations 1.21700 0.94114 1.01404 1.01796 1.21769 0.94039 0.88272 0.94516 1.58765 1.18116 1.14017 1.44869 1.23284 0.98205 0.99866 0.98611 1.22818 0.96943 0.97342 0.92650 1.64997 1.22523 1.35834 0.99686 1.18975 0.88328 0.88558 0.94338 0.96505 1.20750 1.33028 1.11719 0.87498 0.89784 1.25036 0.95983 0.96699 0.94779 1.69874 1.41913 1.39268 1.01040 0.87062 0.81304 0.83538 0.78768 1.19972 1.19291 1.21118 1.20292 0.97855 0.92305 0.92418 1.20954 0.92001 0.99936 0.98137 1.21077 0.96558 0.95990 1.01107 1.20862 0.98635 0.93366 1.03755 1.20902 0.93724 0.98348 1.01336 1.20970 0.96337 0.96392 1.01666 1.22975 0.88869 0.97365 0.96655 0.93251 0.91673 0.92603 0.85965 0.83392 0.91979 0.92086 0.94973 0.91574 0.92337 0.85750 0.87211 0.87431 0.87342 0.87543 0.88721 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.80 37.16 0.33 -1.48 16 2 C 0.11 1.66 1.20 -129.74 -0.16 1.51 16 3 N -0.83 -11.81 9.01 2.24 0.02 -11.79 16 4 C -0.16 -2.32 6.23 -25.38 -0.16 -2.48 16 5 C 0.03 0.54 6.05 -2.76 -0.02 0.52 16 6 N -0.51 -10.07 4.49 -225.28 -1.01 -11.09 16 7 C 0.20 4.65 1.37 -70.02 -0.10 4.55 16 8 H 0.02 0.41 4.24 -51.93 -0.22 0.19 16 9 C -0.49 -13.13 7.86 -34.44 -0.27 -13.40 16 10 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 12 N -0.88 -26.04 13.96 55.43 0.77 -25.26 16 13 Si 0.87 20.83 26.84 -169.99 -4.56 16.27 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.27 -6.19 6.06 56.52 0.34 -5.85 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 C -0.03 -0.59 4.22 -104.62 -0.44 -1.03 16 18 C -0.09 -1.82 9.26 -39.58 -0.37 -2.18 16 19 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 20 C -0.15 -2.43 10.05 -39.58 -0.40 -2.83 16 21 C -0.12 -2.17 10.05 -39.59 -0.40 -2.57 16 22 C -0.13 -2.70 9.67 -39.59 -0.38 -3.08 16 23 C 0.07 1.36 4.74 -1.90 -0.01 1.36 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 27 H 0.33 3.88 9.05 -39.29 -0.36 3.52 16 28 H 0.35 5.27 8.86 -39.29 -0.35 4.92 16 29 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 30 H 0.06 0.78 8.05 -51.93 -0.42 0.37 16 31 H 0.03 0.58 7.63 -51.93 -0.40 0.19 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.12 2.48 7.92 -52.49 -0.42 2.07 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.11 2.09 7.99 -52.48 -0.42 1.67 16 39 H 0.09 2.08 7.94 -51.93 -0.41 1.67 16 40 H 0.04 0.86 7.11 -51.93 -0.37 0.50 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -28.23 319.32 -9.17 -37.40 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.34 Total: 11.31 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -2.86 Total: -21.65 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.22 Total: -48.14 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.56 Total: 16.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.23 -9.17 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405844486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.011 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds